View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16958_high_21 (Length: 247)
Name: NF16958_high_21
Description: NF16958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16958_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 5441841 - 5442070
Alignment:
| Q |
1 |
ttggacacatggtccttgatggcattgtctagttgtgagtcaatgtgaattgacacttaacaaaagaattgcacaatgtttagaatttagaacatgggat |
100 |
Q |
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| T |
5441841 |
ttggacacatggtccttgttggcattgtctagttgtgagtcaatgtgaattgacactcaacaaaagaattgcacaatgtttagaatttagaacatgggat |
5441940 |
T |
|
| Q |
101 |
tggtcccatcacaacttccaaaagaacaaagcaaaacaaaatcataagaaaatcaactaattacattgagttatatgtaagcaattagtttggtctataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5441941 |
tggtcccatcacaacttccaaaagaacaaagcaaaacaaaatcataatgaaattaactaatgacattgagttatatgtaagcaattagtttggtctataa |
5442040 |
T |
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| Q |
201 |
gatcttcaaaacttagaggaaaatcctatt |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
5442041 |
gatcttcaaaacttagaggaaaatcctatt |
5442070 |
T |
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