View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16958_high_23 (Length: 238)

Name: NF16958_high_23
Description: NF16958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16958_high_23
NF16958_high_23
[»] scaffold0281 (2 HSPs)
scaffold0281 (18-238)||(20788-21007)
scaffold0281 (36-238)||(12286-12487)
[»] chr2 (1 HSPs)
chr2 (18-238)||(31896674-31896893)


Alignment Details
Target: scaffold0281 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 21007 - 20788
Alignment:
Q  18 aatggaaacataaaaatccagaacaaagaataatatctatatgtattgatgactattgttatagataatatcaccatattatgaagatatgaatatttga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21007 aatggaaacataaaaatccagaacaaagaataatatctatatgtattgatgactattgttatagataatatcaccatattatgaagatatgaatatttga 20908  T
Q  118 aggtttttggtggttgaatagcatcacatcgaaaaaagcacaaagaaaaattgtgtgcatgcataccatactataacatcgtaaccgaaaaagccaaaga 217  Q
    ||||| |||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20907 aggttgttggtggttgaatagcatcacaccgaaaaaagca-aaagataaattgtgtgcatgcataccatactataacaacgtaaccgaaaaagccaaaga 20809  T
Q  218 aaattggatcaatttcctctc 238  Q
    |||||||||||||||||||||    
T  20808 aaattggatcaatttcctctc 20788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 36 - 238
Target Start/End: Complemental strand, 12487 - 12286
Alignment:
Q  36 cagaacaaagaataatatctatatgtattgatgactattgttatagataatatcaccatattatgaagatatgaatatttgaaggtttttggtggttgaa 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12487 cagaacaaagaataatatctatatgtattgatgactattgttatagataatatcaccatattatgaagatatgaatatttgaaggttgttggtggttgaa 12388  T
Q  136 tagcatcacatcgaaaaaagcacaaagaaaaattgtgtgcatgcataccatactataacatcgtaaccgaaaaagccaaagaaaattggatcaatttcct 235  Q
    ||||||||||  |||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12387 tagcatcacactgaaaaaagca-aaagataaattgtgtgcatgcataccatactataacaacgtaaccgaaaaagccaaagaaaattggatcaatttcct 12289  T
Q  236 ctc 238  Q
    |||    
T  12288 ctc 12286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 31896893 - 31896674
Alignment:
Q  18 aatggaaacataaaaatccagaacaaagaataatatctatatgtattgatgactattgttatagataatatcaccatattatgaagatatgaatatttga 117  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31896893 aatggaaacataaaaatcaagaacaaagaataatatctatatgtattgatgactattgttatagataatatcaccatattatgaagatatgaatatttga 31896794  T
Q  118 aggtttttggtggttgaatagcatcacatcgaaaaaagcacaaagaaaaattgtgtgcatgcataccatactataacatcgtaaccgaaaaagccaaaga 217  Q
    ||||| ||||||||| |||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31896793 aggttgttggtggttaaatagcatcacaccgaaaaaagca-aaagataaattgtgtgcatgcataccatactataacatcgtaaccgaaaaagccaaaga 31896695  T
Q  218 aaattggatcaatttcctctc 238  Q
    |||||||||||||||||||||    
T  31896694 aaattggatcaatttcctctc 31896674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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