View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16958_high_24 (Length: 227)

Name: NF16958_high_24
Description: NF16958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16958_high_24
NF16958_high_24
[»] scaffold0281 (4 HSPs)
scaffold0281 (151-227)||(11897-11973)
scaffold0281 (151-204)||(20425-20478)
scaffold0281 (1-52)||(11749-11800)
scaffold0281 (1-52)||(20277-20328)
[»] chr2 (2 HSPs)
chr2 (151-227)||(31862810-31862886)
chr2 (1-52)||(31862662-31862713)
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-52)||(47509-47560)


Alignment Details
Target: scaffold0281 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 11897 - 11973
Alignment:
Q  151 tttatatctacgacctcttatctcatgttatttgttaattaaattccttcaaaccagtaacaatgggttatgtactt 227  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  11897 tttatatctatgacctcttatctcatgttatttgttaattaaattccttcaaacaagtaacaatgggttctgtactt 11973  T

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Target: scaffold0281; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 20425 - 20478
Alignment:
Q  151 tttatatctacgacctcttatctcatgttatttgttaattaaattccttcaaac 204  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20425 tttatatctatgacctcttatctcatgttatttgttaattaaattccttcaaac 20478  T

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Target: scaffold0281; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 11749 - 11800
Alignment:
Q  1 aatgttggagtgcggctcccatataccaccaatcgggaggaagcgctctcta 52  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  11749 aatgttggagtgcggcttccatataccaccaatcggcaggaagcgctctcta 11800  T

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Target: scaffold0281; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 20277 - 20328
Alignment:
Q  1 aatgttggagtgcggctcccatataccaccaatcgggaggaagcgctctcta 52  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  20277 aatgttggagtgcggcttccatataccaccaatcggcaggaagcgctctcta 20328  T

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Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 31862810 - 31862886
Alignment:
Q  151 tttatatctacgacctcttatctcatgttatttgttaattaaattccttcaaaccagtaacaatgggttatgtactt 227  Q
    |||||||||| ||||||||||  ||||||||||||||||||||||| ||||||| |||||||||||||| |||||||    
T  31862810 tttatatctatgacctcttattccatgttatttgttaattaaattcattcaaacaagtaacaatgggttctgtactt 31862886  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 31862662 - 31862713
Alignment:
Q  1 aatgttggagtgcggctcccatataccaccaatcgggaggaagcgctctcta 52  Q
    |||||||||||| |||| |||||||||||||||||| |||||||||||||||    
T  31862662 aatgttggagtgtggcttccatataccaccaatcggcaggaagcgctctcta 31862713  T

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Target: scaffold0036 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 47560 - 47509
Alignment:
Q  1 aatgttggagtgcggctcccatataccaccaatcgggaggaagcgctctcta 52  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  47560 aatgttggagtgcggcttccatataccaccaatcggcaggaagcgctctcta 47509  T

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