View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16958_high_6 (Length: 382)
Name: NF16958_high_6
Description: NF16958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16958_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 136; Significance: 7e-71; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 196 - 363
Target Start/End: Original strand, 26630045 - 26630212
Alignment:
| Q |
196 |
agaattaattcaaaggttacgacatcattaaactaagctctgccacctcatccctacaatgcctacagcaataaacctgccctccatgaacctcccacat |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
26630045 |
agaattaattcaaaggttacgacatcattaaactaagctctgccacctcatccctaccacgcctacaacaataaacctgccctccatgaaccccccacat |
26630144 |
T |
|
| Q |
296 |
gattgcttctaaatgactccattcatcagtcccttgctccaccccaccactgaccatgacggcataga |
363 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| |
|
|
| T |
26630145 |
gattgcttccaaatgactccattcatcagtcccttgctccgccacaccactgaccatgacgacataga |
26630212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 266 - 363
Target Start/End: Original strand, 26614750 - 26614847
Alignment:
| Q |
266 |
ataaacctgccctccatgaacctcccacatgattgcttctaaatgactccattcatcagtcccttgctccaccccaccactgaccatgacggcataga |
363 |
Q |
| |
|
||||||| ||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| || || || ||||||||||||||| |
|
|
| T |
26614750 |
ataaacccgccttccatgaacctcccccatgattgcttccaaatgactccattcatcagtcccttgctccaccacatcattggccatgacggcataga |
26614847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 26629876 - 26629932
Alignment:
| Q |
21 |
ggataagacatacatatggtaagaatttgatataaacaggcattcatgatcgtatag |
77 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26629876 |
ggataagatatacatatggtaagaatttgatataaacaggcattcatgatcgtatag |
26629932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 22085997 - 22085949
Alignment:
| Q |
28 |
acatacatatggtaagaatttgatataaacaggcattcatgatcgtata |
76 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| ||| ||||||||||||| |
|
|
| T |
22085997 |
acatacatatggtatgaaattgatataaacatgcactcatgatcgtata |
22085949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 363
Target Start/End: Complemental strand, 28770253 - 28770156
Alignment:
| Q |
266 |
ataaacctgccctccatgaacctcccacatgattgcttctaaatgactccattcatcagtcccttgctccaccccaccactgaccatgacggcataga |
363 |
Q |
| |
|
||||||| | ||||||||||||||| | |||||||| |||||||||||||||||| | |||| | ||||| ||||||| | ||||| || ||||| |
|
|
| T |
28770253 |
ataaacccgtcctccatgaacctccgctagaattgcttccaaatgactccattcatcaataccttacgccaccacaccactaatcatgatggaataga |
28770156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 43134764 - 43134814
Alignment:
| Q |
26 |
agacatacatatggtaagaatttgatataaacaggcattcatgatcgtata |
76 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
43134764 |
agacatacatatggtaagaatttgttataaacatgcattcatgatcgtata |
43134814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 363
Target Start/End: Original strand, 17998356 - 17998461
Alignment:
| Q |
258 |
ctacagcaataaacctgccctccatgaacctcccacatgattgcttctaaatgactccattcatcagtcccttgctccaccccaccactgaccatgacgg |
357 |
Q |
| |
|
|||| ||||||||| | ||||||||||||||| | |||||||| |||||||||||||||||| | |||||| ||||| ||| ||| |||||||||| |
|
|
| T |
17998356 |
ctacggcaataaactcgtcctccatgaacctccactagaattgcttccaaatgactccattcatcaataccttgcaccaccacactactaaccatgacgg |
17998455 |
T |
|
| Q |
358 |
cataga |
363 |
Q |
| |
|
||||| |
|
|
| T |
17998456 |
aataga |
17998461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 36562411 - 36562323
Alignment:
| Q |
256 |
gcctacagcaataaacctgccctccatgaacctcccacatgattgcttctaaatgactccattcatcagtcccttgctccaccccacca |
344 |
Q |
| |
|
|||||| ||||||||||||| | | |||||||||| || ||||||||| ||||||| ||||| |||| |||||||||| || ||||| |
|
|
| T |
36562411 |
gcctacggcaataaacctgctccctatgaacctcctccaggattgcttccaaatgacaccattgttcagacccttgctcccccacacca |
36562323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University