View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16958_high_8 (Length: 369)
Name: NF16958_high_8
Description: NF16958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16958_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 75 - 328
Target Start/End: Complemental strand, 43539072 - 43538819
Alignment:
| Q |
75 |
aacaaattaatctttcaaaaaagttatgattttcatccatttctattttacacataaaaattatcaattttttcaccaaaatccaaaaatttgtagccta |
174 |
Q |
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| T |
43539072 |
aacaaattaatctttcaaaaaagttatgattttcatccatttctattttacacataaaaattatcaattttttcaccaaaatccaaaaatttgtagccta |
43538973 |
T |
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| Q |
175 |
taataagggaaaaaacataaacaaaaatcttggccaaataatgaatttttgagctattatttttatgctcctcgcgtatcacgtcgcataaaggccgcct |
274 |
Q |
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| T |
43538972 |
tgataagggaaaaaacataaacaaaaatcttggccaaataatgaatttttgagctattatttttatgctcctcgcgtatcacgtcgcataaaggccgcct |
43538873 |
T |
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| Q |
275 |
gcaactattcttcacttttcattatcttaccctaatttgtggtatatagtaagg |
328 |
Q |
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| T |
43538872 |
gcaactattcttcacttttcattatcttaccctaatttgtggtatatagtaagg |
43538819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 43539118 - 43539073
Alignment:
| Q |
11 |
aagttttctccttttgacaaatagtgaagatacacacatatcaagcat |
58 |
Q |
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| T |
43539118 |
aagttttctccttttgacaaatagtgaagat--acacgtatcaagcat |
43539073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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