View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16958_low_10 (Length: 342)
Name: NF16958_low_10
Description: NF16958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16958_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 14 - 331
Target Start/End: Original strand, 24698806 - 24699123
Alignment:
| Q |
14 |
gaacggaaacattggtggcctacagctgcagtccagtggttctcagagttccgaagtcttacaatctgaggttggaactttaaattcgtcgaaggagaca |
113 |
Q |
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| T |
24698806 |
gaacggaaacattggtggcctacagctgcagtccagtggttctcagagttccgaagtcttacaatctgaggttggaactttaaattcgtcgaaggagaca |
24698905 |
T |
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| Q |
114 |
aacggaggcagtccaaatgtctcggggtcagaggtgactagcatgtatacacagggaggtcttgatagctttactgtcaatcatatcggatctactgtcc |
213 |
Q |
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| T |
24698906 |
aacggaggcagtccaaatgtctcggggtcagaggtgactagcatgtatacacagggagttcttgatagctttactgtcaatcatatcggatctactgtcc |
24699005 |
T |
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| Q |
214 |
actctttgggagacatgatcgatactggacacggtatcgtcatgccaacaaaatggtttgcagcagctggcagacagctgctggaaccataagtttcgat |
313 |
Q |
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| T |
24699006 |
actctttgggagacatgatcgatactggacacggtatcgtcatgccaacaaaatggtttgcagcagctggcagacagctgctggaaccataagtttcgat |
24699105 |
T |
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| Q |
314 |
tcagaaaggaaacaagtg |
331 |
Q |
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| T |
24699106 |
tcagaaaggaaacaagtg |
24699123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 236
Target Start/End: Complemental strand, 43326213 - 43326017
Alignment:
| Q |
40 |
tgcagtccagtggttctcagagttccgaagtcttacaatctgaggttggaactttaaattcgtcgaaggagacaaacggaggcagtccaaatgtctcggg |
139 |
Q |
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|||||| |||||||||||||||||| ||| || | ||||||| |||||||||||||| || || ||||| || || ||| ||||||||||| | || || |
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| T |
43326213 |
tgcagttcagtggttctcagagttctgaactccttgaatctgatgttggaactttaaactcttcaaaggaaactaatggaagcagtccaaatatttctgg |
43326114 |
T |
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| Q |
140 |
gtcagaggtgactagcatgtatacacagggaggtcttgatagctttactgtcaatcatatcggatctactgtccactctttgggagacatgatcgat |
236 |
Q |
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|||||||||||||| ||||| | |||| || ||| |||||||| ||| |||| | |||||| |||||| |||| ||| ||||||||||||| |
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| T |
43326113 |
atcagaggtgactagtttgtattcgaggggaaatcatgacagctttaccgtcgatcaccttggatcttctgtcctctctatggcagacatgatcgat |
43326017 |
T |
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