View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16958_low_11 (Length: 336)
Name: NF16958_low_11
Description: NF16958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16958_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 14 - 298
Target Start/End: Complemental strand, 34927518 - 34927233
Alignment:
| Q |
14 |
atataatatatgaattttacctaccnnnnnnn-atgggatatattttacctacctatcacatatgatatatgatatatcgataatgccagtttataaatt |
112 |
Q |
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| T |
34927518 |
atataatatatgaattttacctacctttttcttatgggatatattttacctacctatcacatatgatatatgatatatcgataatgccagtttataaatt |
34927419 |
T |
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| Q |
113 |
gttaactaatcatggtaaaactatgtgaaaaagaaaggagaacatacttttggtacacaaaggagaacatattgttgcattattaaatttgagtgcaaat |
212 |
Q |
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| T |
34927418 |
gttaactaatcatggtaaaactatgtgaaaaagaaaggagaacatacttttggtacacaaaggagaacatattgttgcattattaaatttgagtgcaaat |
34927319 |
T |
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| Q |
213 |
taatgaattatcatctaaaaagtaagggaaaaacatgttttgttcgtttgtgcaacatccaattttgtaccaacctatattatttt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34927318 |
taatgaattatcatctaaaaagtaagggaaaaacatgttttgttcgtttgtgcaacatccaattttgtaccaacctatattatttt |
34927233 |
T |
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