View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16958_low_12 (Length: 330)
Name: NF16958_low_12
Description: NF16958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16958_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 327
Target Start/End: Original strand, 44166467 - 44166777
Alignment:
| Q |
17 |
caatagttaggcacttaattggacctttatgcccttccaaaacactcaaacaacaatactctctaagaacattattagtattacctcgccaaattcgaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44166467 |
caatagttaggcacttaattggacctttatgcccttccaaaacactcaaacaacaatactctctaagaacattattagtattacctcgccaaattcgaat |
44166566 |
T |
|
| Q |
117 |
tgtcttatcctcagaaccactgcacaccaaatcagataccacagccaaacacaatatagactttgtgtgaccacgtagagcacctatgactatcaaatta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44166567 |
tgtcttatcctcagaaccactgcacaccaaatcagaaaccacagccaaacacaatatagactttgtgtgaccacgtagagcacctatgactatcaaatta |
44166666 |
T |
|
| Q |
217 |
ccattttcacctttttcagataccaatattgatctatcacatgcaccggaatacaaaaccgaaccgtcactgttaagagccaatgcattaatcccagatc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44166667 |
ccattttcacctttttcagataccaatattgatctatcacatgcaccggaatacaaaaccgaaccgtcactgttaagagccaatgcattaatcccagatc |
44166766 |
T |
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| Q |
317 |
tgtgctcctcc |
327 |
Q |
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|||||| |||| |
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| T |
44166767 |
tgtgcttctcc |
44166777 |
T |
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