View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16958_low_15 (Length: 313)
Name: NF16958_low_15
Description: NF16958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16958_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 39101688 - 39101395
Alignment:
| Q |
1 |
aaaaattgacgaaaatggattatctatattaataaaattatacggtcccccaaatttagttcattttgaaagaannnnnnnngtcattgtcaccatcaaa |
100 |
Q |
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| T |
39101688 |
aaaaattgacgaaaatggattatctatattaataaaattatacggtcccccaaatttagttcattttgaaagaattttttt-gtcattgtcaccatcaaa |
39101590 |
T |
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| Q |
101 |
cctctctccatgctccaatcactctcctatttaatttacagaaacgacgggagcccttcgtcatattagatccttttaccattattataaatctttgtca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39101589 |
cctctctccatgctccaatcactctcctatttaatttacacaaacgacgggagcccttcgtcatattagatccttttaccattattctaaatctttgtca |
39101490 |
T |
|
| Q |
201 |
ctaatttatt-ttttatgcgaataattaataacacccccggatattgacaactctaaataattatgcataccttgctgcaaaatcaaagcatgcaaat |
297 |
Q |
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|||||||||| |||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39101489 |
ctaatttatttttttatacgaataat---taacacccccggttattgacaactctaaataattatgcataccttgctgcaaaatcaaagcatgcaaat |
39101395 |
T |
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