View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16958_low_19 (Length: 249)
Name: NF16958_low_19
Description: NF16958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16958_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 37 - 221
Target Start/End: Original strand, 6956650 - 6956834
Alignment:
| Q |
37 |
taggtgattcattctggtattcctgttacccttgttcctcttgatgcaacaaacacaatccccaccattgaagagttctttgaagaatttgaaaagagtc |
136 |
Q |
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| T |
6956650 |
taggtgattcattctggtattcctattacccttgttcctcttgatgcaacaaacacaatccccataagtgaagaattctttgatgaatttgaaaagagtc |
6956749 |
T |
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| Q |
137 |
aggacacatatgaggcacaatattgtttcaagtccttgaaaatggttcgtgatacttggtttgacaagcatttttatacggtaat |
221 |
Q |
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| T |
6956750 |
aagacacatacgaggcacaatactgtttcaagtccttgaaaatggctcatgatacttggtttgacaatcaattttatacggtaat |
6956834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 37 - 200
Target Start/End: Complemental strand, 49103388 - 49103225
Alignment:
| Q |
37 |
taggtgattcattctggtattcctgttacccttgttcctcttgatgcaacaaacacaatccccaccattgaagagttctttgaagaatttgaaaagagtc |
136 |
Q |
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| T |
49103388 |
taggtgattcattctggacttcctatcacccttgttcctattgatgcatcaaacacaatccctatcactaaggaattctttgaagcatttgaaaagagtc |
49103289 |
T |
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| Q |
137 |
aggacacatatgaggcacaatattgtttcaagtccttgaaaatggttcgtgatacttggtttga |
200 |
Q |
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| T |
49103288 |
aagacacatatgagacacaatattgtttcaaatccttgaaaataactcgtgatacttggtttga |
49103225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 49115448 - 49115280
Alignment:
| Q |
35 |
tataggtgattcattctggtattcctgttacccttgttcctcttgatgcaacaaacacaatccccaccattgaagagttctttgaagaatttgaaaagag |
134 |
Q |
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| T |
49115448 |
tataggtgattcattctggaattccagtcaccctagttcctcttgatgcatcaaacacaatccccatcactgcacaattctttgatgcatttgaaaagag |
49115349 |
T |
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| Q |
135 |
tcaggacacatatgaggcacaatattgtttcaagtccttgaaaatggttcgtgatacttggtttgacaa |
203 |
Q |
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| T |
49115348 |
tcaagacacacatgaagcacaatactgtttcaaatccttgaaaatatctcgtgatacttggttcgacaa |
49115280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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