View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16958_low_23 (Length: 239)
Name: NF16958_low_23
Description: NF16958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16958_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 26629419 - 26629582
Alignment:
| Q |
18 |
aggtgaaagcttaaaggtgcatataatatgaaagtaagagacattatgttagtgtagtctactgtttttaatcttagttcctctcttcctttcgatcgtt |
117 |
Q |
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| T |
26629419 |
aggtgatagcttaatggtgcatataatatgaaagtaagagatattatgttagtttagtctattgtttttaatcttagttcctctctttctttcgatcgtt |
26629518 |
T |
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| Q |
118 |
gtctttcccttcttgtagaacaacttgagaaatagatactacaccaccgaaccaatatctattt |
181 |
Q |
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| T |
26629519 |
gtctttcccttcttgtagaacaacttgagaaatggatacaacaccaccgaaccaatatctattt |
26629582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 26637806 - 26637963
Alignment:
| Q |
18 |
aggtgaaagcttaaaggtgcatataatatgaaagtaagagacattatgttagtgtagtctactgtttttaatcttagttcctctcttcctttcgatcgtt |
117 |
Q |
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| T |
26637806 |
aggtgaaagcttaaaggtgcatataatatgaaagtaagagatattatgttagtgtagtgtattgtttttaatcttagttcctctctttctttcgatcgtt |
26637905 |
T |
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| Q |
118 |
gtctttcccttcttgtagaacaacttgagaaatagatactacaccaccgaaccaatat |
175 |
Q |
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| T |
26637906 |
gtctttcccttcttgtagaacaacttgagaaatggatataacaccacggaaccaatat |
26637963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 26614363 - 26614498
Alignment:
| Q |
21 |
tgaaagcttaaaggtgcatataatatgaaagtaagagacattatgttagtgtagtctactgtttttaatcttagttcctctcttcctttcgatcgttgtc |
120 |
Q |
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| T |
26614363 |
tgaaagtttaaaggtgcatataatatgaatgtaagagatattatgttagtgtagtgtattgctttaaatcgttgttcctctctttctttcaatcgttgtg |
26614462 |
T |
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| Q |
121 |
tttcccttcttgtagaacaacttgagaaatagatac |
156 |
Q |
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| T |
26614463 |
tttcccatcttttagaacaacttgaaaaattgatac |
26614498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 26629625 - 26629679
Alignment:
| Q |
185 |
tttgattggattctaaagtccaaaaacttcagaaactgttggaacctaaaacacc |
239 |
Q |
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| T |
26629625 |
tttgattggattctaaagtccaaaaacttcataaattgttggaacctaaaacacc |
26629679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 26717350 - 26717402
Alignment:
| Q |
21 |
tgaaagcttaaaggtgcatataatatgaaagtaagagacattatgttagtgta |
73 |
Q |
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| T |
26717350 |
tgaaaggttaaaggtgcatataatatgaatataagagaaataatgatagtgta |
26717402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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