View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16958_low_29 (Length: 202)
Name: NF16958_low_29
Description: NF16958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16958_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 51837630 - 51837457
Alignment:
| Q |
12 |
aacctgtgataggttggtaaaaagacacccctaaaccatttttgttgttgtgtttaatgcatcgcaatttcgctttgttaatatatattgtttctttgat |
111 |
Q |
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| T |
51837630 |
aacctgtgataggttggtaaaaagacacccctaaaccatttttgttgttgtgtttaatgcatcacaatttcgctttgttaatatatattatttctttgat |
51837531 |
T |
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| Q |
112 |
attttatccaaatcaatataaaaaatctagatccacctctgccgagtatccacaacagttaaaaccctacacct |
185 |
Q |
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| T |
51837530 |
attttatccaaatcaatatcaaaagtctagatccacctctgccgagtatccacaacagttaaaaccctacacct |
51837457 |
T |
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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 40154847 - 40154788
Alignment:
| Q |
58 |
gttgtgtttaatgcatcgcaatttcgctttgttaatatatattgtttctttgatatttta |
117 |
Q |
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| T |
40154847 |
gttgtgcttaatgtgtctcaagttcgttttgttaatatatatagtttctttgatatttta |
40154788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 26736567 - 26736627
Alignment:
| Q |
80 |
ttcgctttgttaatatatattgtttctttgatattttatccaaatcaatataaaaaatcta |
140 |
Q |
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| T |
26736567 |
ttcgctttattaatatatatagtttctttgatattttagccacaccaatatcaaaagtcta |
26736627 |
T |
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