View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16958_low_4 (Length: 405)

Name: NF16958_low_4
Description: NF16958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16958_low_4
NF16958_low_4
[»] chr4 (11 HSPs)
chr4 (20-390)||(11783187-11783561)
chr4 (294-380)||(12608732-12608818)
chr4 (300-385)||(17109551-17109636)
chr4 (303-385)||(13131039-13131122)
chr4 (300-368)||(25097170-25097238)
chr4 (202-280)||(2741020-2741099)
chr4 (293-368)||(9054862-9054937)
chr4 (21-82)||(19895444-19895506)
chr4 (215-279)||(36629199-36629264)
chr4 (224-279)||(52884856-52884914)
chr4 (215-279)||(44620619-44620687)
[»] chr2 (17 HSPs)
chr2 (280-381)||(16815605-16815706)
chr2 (280-381)||(16854762-16854863)
chr2 (156-261)||(41678518-41678624)
chr2 (282-368)||(23009177-23009263)
chr2 (300-385)||(28919027-28919112)
chr2 (215-279)||(28531445-28531510)
chr2 (300-368)||(25923474-25923541)
chr2 (215-280)||(30323424-30323492)
chr2 (215-280)||(33561581-33561647)
chr2 (222-280)||(7598577-7598637)
chr2 (24-84)||(42514801-42514861)
chr2 (181-271)||(30313104-30313197)
chr2 (20-62)||(30312938-30312980)
chr2 (222-271)||(40679768-40679818)
chr2 (215-278)||(3673044-3673111)
chr2 (24-84)||(6421537-6421597)
chr2 (221-280)||(29873667-29873729)
[»] chr3 (19 HSPs)
chr3 (281-380)||(12770397-12770495)
chr3 (300-381)||(34275672-34275755)
chr3 (300-385)||(8771374-8771458)
chr3 (304-376)||(19166517-19166589)
chr3 (285-368)||(16226153-16226236)
chr3 (300-381)||(8766495-8766575)
chr3 (300-381)||(19913399-19913479)
chr3 (222-279)||(9240118-9240176)
chr3 (300-385)||(8146647-8146731)
chr3 (300-368)||(8880580-8880647)
chr3 (222-278)||(21832475-21832532)
chr3 (304-368)||(13586419-13586482)
chr3 (215-279)||(42342221-42342289)
chr3 (216-279)||(22304208-22304273)
chr3 (221-276)||(2299942-2300000)
chr3 (32-84)||(3135048-3135100)
chr3 (221-253)||(8328346-8328378)
chr3 (221-279)||(15773157-15773219)
chr3 (31-63)||(47157659-47157691)
[»] chr5 (12 HSPs)
chr5 (282-368)||(34489723-34489809)
chr5 (297-381)||(31213333-31213417)
chr5 (306-383)||(25405264-25405341)
chr5 (300-385)||(9834309-9834394)
chr5 (300-379)||(19053946-19054025)
chr5 (215-280)||(24489334-24489400)
chr5 (215-280)||(36522026-36522092)
chr5 (297-377)||(31599257-31599338)
chr5 (222-279)||(13415891-13415951)
chr5 (182-271)||(31509550-31509642)
chr5 (300-368)||(20547609-20547675)
chr5 (227-271)||(26074285-26074330)
[»] chr8 (15 HSPs)
chr8 (281-381)||(21320385-21320482)
chr8 (300-381)||(29762014-29762095)
chr8 (300-385)||(17099376-17099461)
chr8 (300-383)||(25231509-25231592)
chr8 (302-385)||(17511737-17511819)
chr8 (300-385)||(24721514-24721599)
chr8 (300-385)||(15175609-15175693)
chr8 (300-368)||(18571359-18571426)
chr8 (215-279)||(1014002-1014068)
chr8 (215-280)||(40518544-40518610)
chr8 (215-279)||(147788-147856)
chr8 (34-84)||(18371939-18371989)
chr8 (22-66)||(4154632-4154676)
chr8 (221-279)||(18372502-18372562)
chr8 (44-84)||(34835047-34835087)
[»] chr1 (9 HSPs)
chr1 (300-385)||(18828202-18828287)
chr1 (222-279)||(22077253-22077311)
chr1 (223-271)||(22077634-22077683)
chr1 (215-271)||(30630777-30630834)
chr1 (222-261)||(66238-66278)
chr1 (24-84)||(31767107-31767167)
chr1 (293-368)||(16115649-16115724)
chr1 (215-279)||(3537278-3537344)
chr1 (24-84)||(9956061-9956122)
[»] chr6 (17 HSPs)
chr6 (284-370)||(11176763-11176849)
chr6 (282-383)||(22570692-22570794)
chr6 (181-278)||(6071058-6071158)
chr6 (28-84)||(35210359-35210416)
chr6 (293-365)||(22525849-22525921)
chr6 (34-84)||(2579818-2579869)
chr6 (215-261)||(10074512-10074559)
chr6 (215-280)||(16108022-16108091)
chr6 (288-334)||(28588295-28588341)
chr6 (215-279)||(29518881-29518947)
chr6 (24-84)||(2578780-2578841)
chr6 (221-280)||(3409627-3409688)
chr6 (216-280)||(8481888-8481954)
chr6 (215-279)||(10073745-10073810)
chr6 (24-84)||(16454727-16454788)
chr6 (328-373)||(21844923-21844968)
chr6 (216-279)||(33605938-33606002)
[»] chr7 (16 HSPs)
chr7 (293-381)||(4985919-4986007)
chr7 (293-381)||(4990017-4990105)
chr7 (285-368)||(8316226-8316309)
chr7 (300-385)||(19202286-19202371)
chr7 (280-385)||(12389372-12389474)
chr7 (300-383)||(20578295-20578377)
chr7 (300-383)||(39269434-39269516)
chr7 (24-62)||(1085584-1085622)
chr7 (281-330)||(5107695-5107744)
chr7 (300-373)||(13251950-13252022)
chr7 (215-261)||(37345878-37345925)
chr7 (222-280)||(40094524-40094583)
chr7 (215-279)||(7553984-7554052)
chr7 (24-66)||(30244504-30244546)
chr7 (25-62)||(30253723-30253760)
chr7 (24-83)||(37533310-37533370)
[»] scaffold0078 (1 HSPs)
scaffold0078 (215-279)||(5316-5384)
[»] scaffold0113 (1 HSPs)
scaffold0113 (182-279)||(39766-39865)
[»] scaffold0391 (1 HSPs)
scaffold0391 (25-62)||(1651-1688)


Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 390
Target Start/End: Complemental strand, 11783561 - 11783187
Alignment:
Q  20 gggtggtccccctggctcccctcatgacccaacagtggtatcaaagctcggttccacgaagggtaaccccaac-ccttgcaatggttgtacacgcaagta 118  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||||    
T  11783561 gggtggtccccctggcacccctcatgacccaacagtggtatcaaagctcggttccacgaagggtacaaccaactccttgcaatggttgtacacgcaagta 11783462  T
Q  119 tttgcgggcagtcaattccattgtcaagaaatcaacaacggtggtacacgcaaaatactcgtggatgaaagaacttcggtttgaggggatagaattatga 218  Q
    ||| ||||| |||  |||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11783461 tttacgggcggtcggttccattgtcaagaaatcagtaacggtggtacaagcaaaatactcgtggatgaaagaacttccgtttgaggggatagaattatga 11783362  T
Q  219 aatgatggactcacacttgagggg---agtgttgtgtgcaagtgtgtcttatatgttccacatcaaaaatttctttcttgttacttagtgacgaatcatg 315  Q
    ||||||||||||||||||||||||   |||||||| ||||||||||| |||||| ||||||||| ||||||||||||| |||||||| ||||||||||||    
T  11783361 aatgatggactcacacttgaggggagtagtgttgtatgcaagtgtgtgttatattttccacatcgaaaatttctttctagttacttaatgacgaatcatg 11783262  T
Q  316 tcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattatgactgcctatg 390  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||    
T  11783261 tcacagtcctgaactttaaatgcactcagtttgatttcacttggagttagataggtattattatgactgcctatg 11783187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 294 - 380
Target Start/End: Complemental strand, 12608818 - 12608732
Alignment:
Q  294 tgttacttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattatg 380  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||    
T  12608818 tgttacttagtgacgaatcacgtcacagtcctgaacttttaatgcaccatgtttgatttcacttgaagttagatatgtattattatg 12608732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 300 - 385
Target Start/End: Complemental strand, 17109636 - 17109551
Alignment:
Q  300 ttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattatgactgc 385  Q
    ||||||| ||||||||||||| ||||  |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  17109636 ttagtgatgaatcatgtcacaatcctacactttaaatgcaccttgtttgatttcacttggagttagataagtattattatgactgc 17109551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 303 - 385
Target Start/End: Original strand, 13131039 - 13131122
Alignment:
Q  303 gtgacgaatcatgtcacagtcctgaactttaaa-tgcaccctgtttgatttcacttggagttagatatgtattattatgactgc 385  Q
    ||||||||| |||||||||||||  |||||||| |||||| |||||||||||||||||| ||||||| ||||||||||||||||    
T  13131039 gtgacgaattatgtcacagtcctacactttaaaatgcaccatgtttgatttcacttggacttagataggtattattatgactgc 13131122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 300 - 368
Target Start/End: Complemental strand, 25097238 - 25097170
Alignment:
Q  300 ttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagata 368  Q
    ||||||||||||||||||||||||||| |||||| | | |||||||||||||||||| |||||||||||    
T  25097238 ttagtgacgaatcatgtcacagtcctgcactttacacgaaccctgtttgatttcactcggagttagata 25097170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 280
Target Start/End: Original strand, 2741020 - 2741099
Alignment:
Q  202 aggggatagaattatgaaatgatggactcacacttga-ggggagtgttgtgtgcaagtgtgtcttatatgttccacatca 280  Q
    |||||| || || ||||| |||||||||||||||||| |||||||||| ||||||||||||  |||||||| ||||||||    
T  2741020 aggggagagcatgatgaattgatggactcacacttgaaggggagtgttatgtgcaagtgtgagttatatgtcccacatca 2741099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 368
Target Start/End: Complemental strand, 9054937 - 9054862
Alignment:
Q  293 ttgttacttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagata 368  Q
    |||||||| ||||| ||||||||||||||| |||||| ||||| | |   ||||||||||| ||||||||||||||    
T  9054937 ttgttactaagtgatgaatcatgtcacagttctgaaccttaaaagtagtttgtttgatttctcttggagttagata 9054862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 19895444 - 19895506
Alignment:
Q  21 ggtggtccccctggctcccctcatgacccaacagtggtatcaaagc-tcggttccacgaaggg 82  Q
    |||||||||| | ||||||| ||||||||||||||||||||| ||| ||||||| ||||||||    
T  19895444 ggtggtccccatagctccccccatgacccaacagtggtatcagagcttcggttcgacgaaggg 19895506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 279
Target Start/End: Original strand, 36629199 - 36629264
Alignment:
Q  215 atgaaatgatggactcacacttgagggg-agtgttgtgtgcaagtgtgtcttatatgttccacatc 279  Q
    ||||| |||||| ||||||||||||||| |||||||||| ||||||||  |||||||| |||||||    
T  36629199 atgaattgatgggctcacacttgagggggagtgttgtgttcaagtgtgagttatatgtcccacatc 36629264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 52884856 - 52884914
Alignment:
Q  224 tggactcacacttgaggggag---tgttgtgtgcaagtgtgtcttatatgttccacatc 279  Q
    |||||||||||||||||||||   |||||||||||||||||  |||||||| |||||||    
T  52884856 tggactcacacttgaggggagtgttgttgtgtgcaagtgtgagttatatgtcccacatc 52884914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 279
Target Start/End: Original strand, 44620619 - 44620687
Alignment:
Q  215 atgaaatgatggactcacacttgagg-ggagt---gttgtgtgcaagtgtgtcttatatgttccacatc 279  Q
    ||||| |||||||||||||||||||| |||||   ||||||||||||||||  |||||||| |||||||    
T  44620619 atgaattgatggactcacacttgaggtggagtgtcgttgtgtgcaagtgtgagttatatgtcccacatc 44620687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 5e-41; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 280 - 381
Target Start/End: Complemental strand, 16815706 - 16815605
Alignment:
Q  280 aaaaatttctttcttgttacttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattat 379  Q
    ||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16815706 aaaaatttctttcttgttacttagtgaaggatcatgtcacaatcctgaactttaaatgcaccctgtttgatttcacttggagttagataggtattattat 16815607  T
Q  380 ga 381  Q
    ||    
T  16815606 ga 16815605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 280 - 381
Target Start/End: Complemental strand, 16854863 - 16854762
Alignment:
Q  280 aaaaatttctttcttgttacttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattat 379  Q
    ||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16854863 aaaaatttctttcttgttacttagtgaaggatcatgtcacaatcctgaactttaaatgcaccctgtttgatttcacttggagttagataggtattattat 16854764  T
Q  380 ga 381  Q
    ||    
T  16854763 ga 16854762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 156 - 261
Target Start/End: Complemental strand, 41678624 - 41678518
Alignment:
Q  156 acggtggtacacgcaaaatactcgtggatgaaagaacttcggtttgaggggatagaattatgaaatgatggactcacacttg-aggggagtgttgtgtgc 254  Q
    |||| |||||| ||||||||||||||||| ||||| |||| | |||||| || || |||||||| ||||||||||||||||| |||||||||||||||||    
T  41678624 acggcggtacaagcaaaatactcgtggattaaagagcttccgcttgaggagagagcattatgaattgatggactcacacttgaaggggagtgttgtgtgc 41678525  T
Q  255 aagtgtg 261  Q
    |||||||    
T  41678524 aagtgtg 41678518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 282 - 368
Target Start/End: Original strand, 23009177 - 23009263
Alignment:
Q  282 aaatttctttcttgttacttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagata 368  Q
    ||||| ||||||||||||| ||||||||||||||||| |||||| ||| |||||||||| |||||||||||| |||| |||||||||    
T  23009177 aaattactttcttgttactaagtgacgaatcatgtcaaagtcctaaaccttaaatgcactctgtttgatttctcttgcagttagata 23009263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 385
Target Start/End: Complemental strand, 28919112 - 28919027
Alignment:
Q  300 ttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattatgactgc 385  Q
    ||||||||||||||||||||| ||||  |||||||||||||||| | |||||||| ||||||||||||| |  ||||| |||||||    
T  28919112 ttagtgacgaatcatgtcacaatcctacactttaaatgcaccctatctgatttcaattggagttagatacgggttattgtgactgc 28919027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 28531510 - 28531445
Alignment:
Q  215 atgaaatgatggactcacacttgagggg-agtgttgtgtgcaagtgtgtcttatatgttccacatc 279  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||  |||||||| |||||||    
T  28531510 atgaactgatggactcacacttgagggggagtgttgtgtgcaagtgtgagttatatgtcccacatc 28531445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 368
Target Start/End: Complemental strand, 25923541 - 25923474
Alignment:
Q  300 ttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagata 368  Q
    ||||||||||||||||||||||||||| || ||| ||| ||| ||||| ||||||||||||||||||||    
T  25923541 ttagtgacgaatcatgtcacagtcctgcac-ttacatgaaccatgtttaatttcacttggagttagata 25923474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 30323424 - 30323492
Alignment:
Q  215 atgaaatgatggactcacacttgaggg---gagtgttgtgtgcaagtgtgtcttatatgttccacatca 280  Q
    ||||| |||||||||||||||||||||   || |||||||||||||||||| |||||||| ||| ||||    
T  30323424 atgaattgatggactcacacttgagggggagattgttgtgtgcaagtgtgtgttatatgtcccaaatca 30323492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 33561647 - 33561581
Alignment:
Q  215 atgaaatgatggactcacacttga-ggggagtgttgtgtgcaagtgtgtcttatatgttccacatca 280  Q
    ||||| |||||||| | ||||||| ||||| |||||||||||||||||  |||||||||||||||||    
T  33561647 atgaattgatggacacgcacttgatggggaatgttgtgtgcaagtgtgagttatatgttccacatca 33561581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 7598577 - 7598637
Alignment:
Q  222 gatggactcacacttgag-gggagtgttg-tgtgcaagtgtgtcttatatgttccacatca 280  Q
    |||||||||||||||||| |||||||||| ||||||||||||  |||||||| ||||||||    
T  7598577 gatggactcacacttgagagggagtgttggtgtgcaagtgtgagttatatgtcccacatca 7598637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 42514801 - 42514861
Alignment:
Q  24 ggtccccctggctcccctcatgacccaacagtggtatcaaagctcggttccacgaagggta 84  Q
    ||||||||  ||||||||| ||||||||||||||||||| ||| | |||| ||||||||||    
T  42514801 ggtcccccgagctcccctcgtgacccaacagtggtatcagagccctgttcgacgaagggta 42514861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 271
Target Start/End: Original strand, 30313104 - 30313197
Alignment:
Q  181 ggatgaaagaacttcggtttgaggggatagaattatgaaatgatggactcacacttgaggg---gagtgttgtgtgcaagtgtgtcttatatgt 271  Q
    |||||||||| |||| | ||||||||  || || ||||| || ||||||||||||||||||   || ||||||||||||| |||| ||||||||    
T  30313104 ggatgaaagagcttccgcttgaggggtgagcatgatgaattgttggactcacacttgaggggaagattgttgtgtgcaagcgtgtgttatatgt 30313197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 30312938 - 30312980
Alignment:
Q  20 gggtggtccccctggctcccctcatgacccaacagtggtatca 62  Q
    ||||||||||||  ||||||||| |||||||||||||||||||    
T  30312938 gggtggtcccccgagctcccctcgtgacccaacagtggtatca 30312980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 40679818 - 40679768
Alignment:
Q  222 gatggactcacacttgagggg-agtgttgtgtgcaagtgtgtcttatatgt 271  Q
    ||||||||||||||||||||| |||||||||||||| ||||  ||||||||    
T  40679818 gatggactcacacttgagggggagtgttgtgtgcaaatgtgagttatatgt 40679768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 3673044 - 3673111
Alignment:
Q  215 atgaaatgatggactcacacttgagg-ggag---tgttgtgtgcaagtgtgtcttatatgttccacat 278  Q
    ||||| |||||||||||||||||||| ||||   |||||||||||||||||  |||||||| ||||||    
T  3673044 atgaattgatggactcacacttgaggaggagtgttgttgtgtgcaagtgtgagttatatgtcccacat 3673111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 6421537 - 6421597
Alignment:
Q  24 ggtccccctggctcccctcatgacccaacagtggtatcaaagctcggttccacgaagggta 84  Q
    ||||||||  ||||||||| ||||||||||||||||||| ||| | |||| || |||||||    
T  6421537 ggtcccccgagctcccctcgtgacccaacagtggtatcagagcaccgttcgacaaagggta 6421597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 29873729 - 29873667
Alignment:
Q  221 tgatggactcacacttgaggg---gagtgttgtgtgcaagtgtgtcttatatgttccacatca 280  Q
    |||||||||||||||||||||   || ||||||||||||| |||| ||| |||| ||||||||    
T  29873729 tgatggactcacacttgagggggagattgttgtgtgcaagggtgtgttacatgtcccacatca 29873667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 281 - 380
Target Start/End: Original strand, 12770397 - 12770495
Alignment:
Q  281 aaaatttctttcttgttacttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattatg 380  Q
    |||||||||||| | ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||    
T  12770397 aaaatttctttcat-ttacttagtgacgaatcgtgtcacagtcctgaactttcaatgcaccctgtttgatttcacttggagatagataggtattattatg 12770495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 300 - 381
Target Start/End: Original strand, 34275672 - 34275755
Alignment:
Q  300 ttagtgacgaatcatgtcacagtcctgaac--tttaaatgcaccctgtttgatttcacttggagttagatatgtattattatga 381  Q
    ||||||||||||||||||||||||||  ||  ||||||||||| ||||| ||||||||||||||||||||| ||||||||||||    
T  34275672 ttagtgacgaatcatgtcacagtcctctacactttaaatgcactctgttcgatttcacttggagttagataggtattattatga 34275755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 300 - 385
Target Start/End: Complemental strand, 8771458 - 8771374
Alignment:
Q  300 ttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattatgactgc 385  Q
    |||||||||||||||||||||| |||| | |||| ||| |||||||||||||||||||||||||||||| ||||  ||||||||||    
T  8771458 ttagtgacgaatcatgtcacagccctgca-tttacatgaaccctgtttgatttcacttggagttagataggtatctttatgactgc 8771374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 304 - 376
Target Start/End: Original strand, 19166517 - 19166589
Alignment:
Q  304 tgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattat 376  Q
    ||||||||||||| ||| ||||  |||||||||||| |||||||||||||||||||||||||||| |||||||    
T  19166517 tgacgaatcatgtaacattcctacactttaaatgcatcctgtttgatttcacttggagttagataggtattat 19166589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 285 - 368
Target Start/End: Complemental strand, 16226236 - 16226153
Alignment:
Q  285 tttctttcttgttacttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagata 368  Q
    |||||||  |||||||||||||||||||||| |||| |||||||| ||| ||| ||||||||||| ||| ||||||||||||||    
T  16226236 tttcttttctgttacttagtgacgaatcatgccacaatcctgaaccttatatgtaccctgtttgacttctcttggagttagata 16226153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 381
Target Start/End: Complemental strand, 8766575 - 8766495
Alignment:
Q  300 ttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattatga 381  Q
    |||||||||||||||||||| | |||| | |||| ||| |||||||||||||||||||||||||||||| ||||| ||||||    
T  8766575 ttagtgacgaatcatgtcacggccctgca-tttacatgaaccctgtttgatttcacttggagttagataggtatttttatga 8766495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 381
Target Start/End: Complemental strand, 19913479 - 19913399
Alignment:
Q  300 ttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattatga 381  Q
    |||||||  |||||||||||||||||| | || || ||||||||||||||||||||||| |||||||| |||||||||||||    
T  19913479 ttagtgataaatcatgtcacagtcctgcaattcaa-tgcaccctgtttgatttcacttgaagttagatgtgtattattatga 19913399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 279
Target Start/End: Original strand, 9240118 - 9240176
Alignment:
Q  222 gatggactcacacttgagg-ggagtgttgtgtgcaagtgtgtcttatatgttccacatc 279  Q
    ||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||    
T  9240118 gatggactcacacttgaggaggagtgttgtgtgcaagtgtgagttatatgttccacatc 9240176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 385
Target Start/End: Complemental strand, 8146731 - 8146647
Alignment:
Q  300 ttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattatgactgc 385  Q
    |||||||| |||||||||||| ||||  |||| |  |||||| |||||||||| ||||||||||||||| ||||||||||||||||    
T  8146731 ttagtgacaaatcatgtcacactcctacacttcat-tgcaccatgtttgattttacttggagttagataggtattattatgactgc 8146647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 368
Target Start/End: Original strand, 8880580 - 8880647
Alignment:
Q  300 ttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagata 368  Q
    ||||||||||||||||||||||||||| | |||| ||| ||| | ||||||||||||||||||||||||    
T  8880580 ttagtgacgaatcatgtcacagtcctgca-tttacatgaaccttatttgatttcacttggagttagata 8880647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 278
Target Start/End: Complemental strand, 21832532 - 21832475
Alignment:
Q  222 gatggactcacacttgagg-ggagtgttgtgtgcaagtgtgtcttatatgttccacat 278  Q
    ||||||||||||||||||| |||||||| ||||||||||||  |||||||| ||||||    
T  21832532 gatggactcacacttgaggcggagtgttatgtgcaagtgtgagttatatgtcccacat 21832475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 368
Target Start/End: Complemental strand, 13586482 - 13586419
Alignment:
Q  304 tgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagata 368  Q
    |||| ||||||||||| |||||| |||| | ||| ||| ||||||||||||||||||||||||||    
T  13586482 tgacaaatcatgtcaccgtcctgcactt-acatgaaccttgtttgatttcacttggagttagata 13586419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 42342289 - 42342221
Alignment:
Q  215 atgaaatgatggactcacacttga-ggggag---tgttgtgtgcaagtgtgtcttatatgttccacatc 279  Q
    ||||| |||||||||||||||||| ||||||   |||||||||||||||||  | ||||||||||||||    
T  42342289 atgaattgatggactcacacttgagggggagtgttgttgtgtgcaagtgtgattcatatgttccacatc 42342221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 279
Target Start/End: Original strand, 22304208 - 22304273
Alignment:
Q  216 tgaaatgatggactcacacttga-ggggagtgtt-gtgtgcaagtgtgtcttatatgttccacatc 279  Q
    |||| |||||||||||||||||| |||||||||| || ||||||||||  |||||||| |||||||    
T  22304208 tgaattgatggactcacacttgagggggagtgttggtttgcaagtgtgagttatatgtcccacatc 22304273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 276
Target Start/End: Original strand, 2299942 - 2300000
Alignment:
Q  221 tgatggactcacacttgagggg---agtgttgtgtgcaagtgtgtcttatatgttccac 276  Q
    ||||||||||||||||||||||   | |||||||||||||||||  |||||||| ||||    
T  2299942 tgatggactcacacttgagggggatattgttgtgtgcaagtgtgggttatatgtcccac 2300000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 3135100 - 3135048
Alignment:
Q  32 tggctcccctcatgacccaacagtggtatcaaagctcggttccacgaagggta 84  Q
    |||||||||||||||||||| |||||||||| ||| | |||| || |||||||    
T  3135100 tggctcccctcatgacccaatagtggtatcagagcaccgttcgacaaagggta 3135048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 8328346 - 8328378
Alignment:
Q  221 tgatggactcacacttgaggggagtgttgtgtg 253  Q
    |||||||||||||||||||||| ||||||||||    
T  8328346 tgatggactcacacttgaggggggtgttgtgtg 8328378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 15773157 - 15773219
Alignment:
Q  221 tgatggactcacacttgagggg-agtgtt---gtgtgcaagtgtgtcttatatgttccacatc 279  Q
    |||||||||||||||||||||| ||||||   |||||||||||||  |||||||| |||||||    
T  15773157 tgatggactcacacttgagggggagtgttgttgtgtgcaagtgtgagttatatgtcccacatc 15773219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 47157659 - 47157691
Alignment:
Q  31 ctggctcccctcatgacccaacagtggtatcaa 63  Q
    |||||||||||||||| ||||||||||||||||    
T  47157659 ctggctcccctcatgatccaacagtggtatcaa 47157691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 282 - 368
Target Start/End: Complemental strand, 34489809 - 34489723
Alignment:
Q  282 aaatttctttcttgttacttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagata 368  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||    
T  34489809 aaatttctttcttgttactaagtgacgaatcatgtcacagtcctaaaccttaaatgcaccctgtttgatttctcttggagttagata 34489723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 297 - 381
Target Start/End: Complemental strand, 31213417 - 31213333
Alignment:
Q  297 tacttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattatga 381  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  31213417 tacttagtgatgaatcatgtcacaatcctgaactttaaatgcaccctgtttgatttcacttgaagttagatatgtattgttatga 31213333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 306 - 383
Target Start/End: Original strand, 25405264 - 25405341
Alignment:
Q  306 acgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattatgact 383  Q
    ||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25405264 acgaatcatgtcacagtcctacactttaaatgcaccctatttgatttcacttggagttagatatgtattattatgact 25405341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 300 - 385
Target Start/End: Complemental strand, 9834394 - 9834309
Alignment:
Q  300 ttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattatgactgc 385  Q
    ||||| ||||||||||||||| ||||  | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9834394 ttagttacgaatcatgtcacattcctacaatttaaatgcaccctgtttgatttcacttggagttagataggtattattatgactgc 9834309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 300 - 379
Target Start/End: Complemental strand, 19054025 - 19053946
Alignment:
Q  300 ttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattat 379  Q
    |||||||||||| |||||||||||||  ||||||||||||| || ||||||||  ||||||| |||||||||||||||||    
T  19054025 ttagtgacgaatgatgtcacagtcctacactttaaatgcactctatttgattttgcttggaggtagatatgtattattat 19053946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 24489400 - 24489334
Alignment:
Q  215 atgaaatgatggactcacacttgagggg-agtgttgtgtgcaagtgtgtcttatatgttccacatca 280  Q
    ||||| |||||||||||||||||||||| |||||||||| ||||||||  |||||||| ||||||||    
T  24489400 atgaattgatggactcacacttgagggggagtgttgtgttcaagtgtgagttatatgtcccacatca 24489334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 36522092 - 36522026
Alignment:
Q  215 atgaaatgatggactcacacttgaggg-gagtgttgtgtgcaagtgtgtcttatatgttccacatca 280  Q
    ||||| ||||||||||||||||||||| |||||||||| |||||||||  |||||||| ||||||||    
T  36522092 atgaattgatggactcacacttgagggagagtgttgtgcgcaagtgtgagttatatgtcccacatca 36522026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 377
Target Start/End: Original strand, 31599257 - 31599338
Alignment:
Q  297 tacttagtgacgaatcatgtcacagtcctgaactttaaatgca-ccctgtttgatttcacttggagttagatatgtattatt 377  Q
    |||||||| ||||||||||||| |||||||||| ||| ||| | |||||||||||||| ||| |||||||||| | ||||||    
T  31599257 tacttagtaacgaatcatgtcatagtcctgaacgttatatgtacccctgtttgatttctcttagagttagatagggattatt 31599338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 279
Target Start/End: Complemental strand, 13415951 - 13415891
Alignment:
Q  222 gatggactcacacttgaggggag---tgttgtgtgcaagtgtgtcttatatgttccacatc 279  Q
    |||||||||||||||||||||||   |||||||||||||||||  |||||||| |||||||    
T  13415951 gatggactcacacttgaggggagtgctgttgtgtgcaagtgtgagttatatgtcccacatc 13415891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 271
Target Start/End: Original strand, 31509550 - 31509642
Alignment:
Q  182 gatgaaagaacttcggtttgaggggatagaattatgaaatgatggactcacacttgaggg---gagtgttgtgtgcaagtgtgtcttatatgt 271  Q
    ||||||||| |||| | ||||||||  || || ||||| |||||||||||||||||||||   || |||||||||||||||||  ||||||||    
T  31509550 gatgaaagagcttccgcttgaggggtgagcatgatgaattgatggactcacacttgagggagagattgttgtgtgcaagtgtgagttatatgt 31509642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 368
Target Start/End: Original strand, 20547609 - 20547675
Alignment:
Q  300 ttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagata 368  Q
    ||||||||||||||||||||||||||| ||  || ||| ||||||||| ||||||| ||||||||||||    
T  20547609 ttagtgacgaatcatgtcacagtcctgtac-atacatgaaccctgtttaatttcac-tggagttagata 20547675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 26074330 - 26074285
Alignment:
Q  227 actcacacttgagggg-agtgttgtgtgcaagtgtgtcttatatgt 271  Q
    |||||||||||||||| |||||||||||||||||||  ||||||||    
T  26074330 actcacacttgagggggagtgttgtgtgcaagtgtgagttatatgt 26074285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 281 - 381
Target Start/End: Complemental strand, 21320482 - 21320385
Alignment:
Q  281 aaaatttctttcttgttacttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattatg 380  Q
    |||||||||||||||||   |||||||| ||||||||||||||||  |||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  21320482 aaaatttctttcttgtt---tagtgacggatcatgtcacagtcctacactttaaatgcaccctatctgatttcacttggagttagatatgtattattatg 21320386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 300 - 381
Target Start/End: Original strand, 29762014 - 29762095
Alignment:
Q  300 ttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattatga 381  Q
    ||||||||||||||||||||||||||  |||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  29762014 ttagtgacgaatcatgtcacagtcctacactttaaatgcaccttgtttgattccacttggagttagatatgtattattatga 29762095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 300 - 385
Target Start/End: Original strand, 17099376 - 17099461
Alignment:
Q  300 ttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattatgactgc 385  Q
    |||||||||||||||||||| |||||  | |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  17099376 ttagtgacgaatcatgtcacggtcctacaatttaaatgcaccctttttgatttcacttggagttagataggtattattatgactgc 17099461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 300 - 383
Target Start/End: Complemental strand, 25231592 - 25231509
Alignment:
Q  300 ttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattatgact 383  Q
    ||||||||||||||||||||| ||||  |||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||    
T  25231592 ttagtgacgaatcatgtcacaatcctacactttaaatgcaccctatttgatttcacttggatttagataggtattattatgact 25231509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 302 - 385
Target Start/End: Complemental strand, 17511819 - 17511737
Alignment:
Q  302 agtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattatgactgc 385  Q
    ||||||||||||||||||||||||| |||| | ||  ||| |||||||||||||||||||||||||||||||||||||||||||    
T  17511819 agtgacgaatcatgtcacagtcctgcactt-acataaaccttgtttgatttcacttggagttagatatgtattattatgactgc 17511737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 300 - 385
Target Start/End: Original strand, 24721514 - 24721599
Alignment:
Q  300 ttagtgacgaatcatgtcacagtcctgaactttaaatgcaccc-tgtttgatttcacttggagttagatatgtattattatgactgc 385  Q
    |||||||| |||||||||||||||||| |||| | ||| |||| |||||||||||||||||||||||||| ||||| ||||||||||    
T  24721514 ttagtgactaatcatgtcacagtcctgcactt-acatgaacccctgtttgatttcacttggagttagataggtatttttatgactgc 24721599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 385
Target Start/End: Original strand, 15175609 - 15175693
Alignment:
Q  300 ttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattatgactgc 385  Q
    |||||||||||| |||||||||||||| || | | ||| ||||| |||||||||||||||||||||||| |||||||||| |||||    
T  15175609 ttagtgacgaattatgtcacagtcctgcacgt-acatgaaccctatttgatttcacttggagttagataggtattattataactgc 15175693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 300 - 368
Target Start/End: Complemental strand, 18571426 - 18571359
Alignment:
Q  300 ttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagata 368  Q
    |||||||| |||||||| ||||||||| |||| | ||| ||||| ||||||||||||||||||||||||    
T  18571426 ttagtgacaaatcatgtgacagtcctgcactt-acatgaaccctatttgatttcacttggagttagata 18571359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 1014068 - 1014002
Alignment:
Q  215 atgaaatgatggactcacacttga-ggggagtgtt-gtgtgcaagtgtgtcttatatgttccacatc 279  Q
    ||||| |||||||||||||||||| |||||||||| || ||||||||||  ||||||||||||||||    
T  1014068 atgaattgatggactcacacttgagggggagtgttggtttgcaagtgtgagttatatgttccacatc 1014002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 40518544 - 40518610
Alignment:
Q  215 atgaaatgatggactcacacttga-ggggagtgttgtgtgcaagtgtgtcttatatgttccacatca 280  Q
    ||||| |||||||||||||||||| ||||||| |||||| ||||||||  |||||||| ||||||||    
T  40518544 atgaattgatggactcacacttgagggggagtattgtgttcaagtgtgagttatatgtcccacatca 40518610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 279
Target Start/End: Original strand, 147788 - 147856
Alignment:
Q  215 atgaaatgatggactcacacttga-ggggag---tgttgtgtgcaagtgtgtcttatatgttccacatc 279  Q
    ||||| |||||||||||||||||| ||||||   |||||||||||||||||  |||||||| |||||||    
T  147788 atgaattgatggactcacacttgagggggagtgttgttgtgtgcaagtgtgagttatatgtcccacatc 147856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 18371989 - 18371939
Alignment:
Q  34 gctcccctcatgacccaacagtggtatcaaagctcggttccacgaagggta 84  Q
    ||||||||||||||||||||||||||||| |||  ||||| || |||||||    
T  18371989 gctcccctcatgacccaacagtggtatcagagcctggttcgacaaagggta 18371939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 4154676 - 4154632
Alignment:
Q  22 gtggtccccctggctcccctcatgacccaacagtggtatcaaagc 66  Q
    |||||||| | | ||||| ||||||||||||||||||||||||||    
T  4154676 gtggtccctcggactcccttcatgacccaacagtggtatcaaagc 4154632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 18372562 - 18372502
Alignment:
Q  221 tgatggactcacacttga-ggggagtgttg-tgtgcaagtgtgtcttatatgttccacatc 279  Q
    |||||||||||||||||| ||||||||||| |||| |||||||  |||||||| |||||||    
T  18372562 tgatggactcacacttgagggggagtgttgttgtgaaagtgtgagttatatgtcccacatc 18372502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 34835047 - 34835087
Alignment:
Q  44 tgacccaacagtggtatcaaagctcggttccacgaagggta 84  Q
    ||||||||||||||||||| ||| |||||| ||||||||||    
T  34835047 tgacccaacagtggtatcagagcccggttcgacgaagggta 34835087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 300 - 385
Target Start/End: Complemental strand, 18828287 - 18828202
Alignment:
Q  300 ttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattatgactgc 385  Q
    ||||||||||||||||||||| ||||  |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  18828287 ttagtgacgaatcatgtcacaatcctacactttaaatgcaccctctttgatttcacttggagttagataggtattattatgactgc 18828202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 279
Target Start/End: Complemental strand, 22077311 - 22077253
Alignment:
Q  222 gatggactcacacttgagggg-agtgttgtgtgcaagtgtgtcttatatgttccacatc 279  Q
    ||||||| ||||||||||||| |||||||||||||||||||  |||||||| |||||||    
T  22077311 gatggacacacacttgagggggagtgttgtgtgcaagtgtgagttatatgtcccacatc 22077253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 22077683 - 22077634
Alignment:
Q  223 atggactcacacttgagggg-agtgttgtgtgcaagtgtgtcttatatgt 271  Q
    |||||||||||||||||||| |||||||||||||||||||  ||||||||    
T  22077683 atggactcacacttgagggggagtgttgtgtgcaagtgtgagttatatgt 22077634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 30630834 - 30630777
Alignment:
Q  215 atgaaatgatggactcacacttgag-gggagtgttgtgtgcaagtgtgtcttatatgt 271  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||||||||  ||||||||    
T  30630834 atgaattgatggactcacacttgagagggagtgttatgtgcaagtgtgatttatatgt 30630777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 261
Target Start/End: Complemental strand, 66278 - 66238
Alignment:
Q  222 gatggactcacacttgagggg-agtgttgtgtgcaagtgtg 261  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  66278 gatggactcacacttgaggggaagtgttgtgtgcaagtgtg 66238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 31767167 - 31767107
Alignment:
Q  24 ggtccccctggctcccctcatgacccaacagtggtatcaaagctcggttccacgaagggta 84  Q
    ||||||||  ||| ||||||||||||||||||||||||| ||| | |||| ||||||||||    
T  31767167 ggtcccccaagcttccctcatgacccaacagtggtatcagagccccgttcgacgaagggta 31767107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 293 - 368
Target Start/End: Complemental strand, 16115724 - 16115649
Alignment:
Q  293 ttgttacttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagata 368  Q
    |||||| | ||||| |||||||||||||  ||||||| |||||||||   ||||||||||| | ||||||||||||    
T  16115724 ttgttattaagtgaagaatcatgtcacaaccctgaaccttaaatgcaatttgtttgatttctcatggagttagata 16115649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 3537344 - 3537278
Alignment:
Q  215 atgaaatgatggactcacacttga-ggggagtgtt-gtgtgcaagtgtgtcttatatgttccacatc 279  Q
    ||||| |||||||||||||||||| |||||||||| || ||||||||||  |||||||| |||||||    
T  3537344 atgaattgatggactcacacttgagggggagtgttggtttgcaagtgtgagttatatgtcccacatc 3537278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 9956061 - 9956122
Alignment:
Q  24 ggtccccctggctcccctcatgacccaacagtggtatcaaag-ctcggttccacgaagggta 84  Q
    |||||||  ||||| |||| ||||||||||||||||||| || |||||||| ||||||||||    
T  9956061 ggtcccctaggctctcctcgtgacccaacagtggtatcagagcctcggttcgacgaagggta 9956122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 284 - 370
Target Start/End: Original strand, 11176763 - 11176849
Alignment:
Q  284 atttctttcttgttacttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatg 370  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||  |||| ||||||||||| ||||||||||||||||    
T  11176763 atttctttcttattactaagtgacgaatcatgtcacagtcctgaactttaaaatcaccttgtttgatttctcttggagttagatatg 11176849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 282 - 383
Target Start/End: Complemental strand, 22570794 - 22570692
Alignment:
Q  282 aaatttctttcttgttacttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatg-tattattatg 380  Q
    |||||||| ||||| |||| |||||| ||||||||||||||||||||| ||||| ||| | ||||||||||| |||||||||||||||| ||||||||||    
T  22570794 aaatttctctcttgatactaagtgacaaatcatgtcacagtcctgaaccttaaaagcagcatgtttgatttctcttggagttagatatgatattattatg 22570695  T
Q  381 act 383  Q
    |||    
T  22570694 act 22570692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 278
Target Start/End: Original strand, 6071058 - 6071158
Alignment:
Q  181 ggatgaaagaacttcggtttgaggggatagaattatgaaatgatggactcacacttgaggg---gagtgttgtgtgcaagtgtgtcttatatgttccaca 277  Q
    |||||||||| |||| |||| |||||  || || ||||| ||||||||||||| |||||||   || |||||||||||||||||  |||||||| |||||    
T  6071058 ggatgaaagagcttccgtttaaggggtgagcatgatgaattgatggactcacatttgaggggaagattgttgtgtgcaagtgtgagttatatgtcccaca 6071157  T
Q  278 t 278  Q
    |    
T  6071158 t 6071158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 35210359 - 35210416
Alignment:
Q  28 cccctggctcccctcatgacccaacagtggtatcaaag-ctcggttccacgaagggta 84  Q
    |||||||||||||   |||||||||||||||||||||| |||||||| ||||||||||    
T  35210359 cccctggctcccccagtgacccaacagtggtatcaaagcctcggttcgacgaagggta 35210416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 365
Target Start/End: Original strand, 22525849 - 22525921
Alignment:
Q  293 ttgttacttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttag 365  Q
    |||||||| |||||| |||   ||||||||||||||| |||||||||  || ||||||||| |||||||||||    
T  22525849 ttgttactaagtgacaaatagagtcacagtcctgaaccttaaatgcaatctatttgatttctcttggagttag 22525921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 2579869 - 2579818
Alignment:
Q  34 gctcccctcatgacccaacagtggtatcaaag-ctcggttccacgaagggta 84  Q
    ||||||||||| ||||||||||||||||| || | |||||||||||||||||    
T  2579869 gctcccctcattacccaacagtggtatcagagccccggttccacgaagggta 2579818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 261
Target Start/End: Complemental strand, 10074559 - 10074512
Alignment:
Q  215 atgaaatgatggactcacacttgagggg-agtgttgtgtgcaagtgtg 261  Q
    ||||| |||||||||||||||| ||||| |||||||||||||||||||    
T  10074559 atgaattgatggactcacacttaagggggagtgttgtgtgcaagtgtg 10074512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 16108022 - 16108091
Alignment:
Q  215 atgaaatgatggactcacacttga-ggggag---tgttgtgtgcaagtgtgtcttatatgttccacatca 280  Q
    ||||| |||||||||||||||||| ||||||   |||||||| ||||||||  |||||||||||||||||    
T  16108022 atgaattgatggactcacacttgagggggagtgttgttgtgtacaagtgtgagttatatgttccacatca 16108091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 28588295 - 28588341
Alignment:
Q  288 ctttcttgttacttagtgacgaatcatgtcacagtcctgaactttaa 334  Q
    |||| |||||||| |||||||||||||||||||||| ||||| ||||    
T  28588295 ctttgttgttactaagtgacgaatcatgtcacagtcttgaaccttaa 28588341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 279
Target Start/End: Original strand, 29518881 - 29518947
Alignment:
Q  215 atgaaatgatggactcacacttga-ggggagtgtt-gtgtgcaagtgtgtcttatatgttccacatc 279  Q
    ||||| |||||||||||||||||| |||||||||| || ||||||||||  |||||||| |||||||    
T  29518881 atgaattgatggactcacacttgagggggagtgttggtttgcaagtgtgagttatatgtcccacatc 29518947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 2578841 - 2578780
Alignment:
Q  24 ggtccccctggctcccctcatgacccaacagtggtatcaaag-ctcggttccacgaagggta 84  Q
    |||||||| ||||||||||||||  |||||||||||||| || | |||||| ||||||||||    
T  2578841 ggtcccccaggctcccctcatgaatcaacagtggtatcagagccccggttcgacgaagggta 2578780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 3409627 - 3409688
Alignment:
Q  221 tgatggactcacacttga-ggggagtgtt-gtgtgcaagtgtgtcttatatgttccacatca 280  Q
    |||||||||||||||||| |||||||||| || ||||||||||  |||||||| ||||||||    
T  3409627 tgatggactcacacttgagggggagtgttggtttgcaagtgtgagttatatgtaccacatca 3409688  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 8481888 - 8481954
Alignment:
Q  216 tgaaatgatggactcacacttgaggg---gagtgttgtgtgcaagtgtgtcttatatgttccacatca 280  Q
    |||| |||||||||||||||||||||   || |||||||||||||||||  ||||||| |||||||||    
T  8481888 tgaattgatggactcacacttgagggggagattgttgtgtgcaagtgtgagttatatg-tccacatca 8481954  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 10073810 - 10073745
Alignment:
Q  215 atgaaatgatggactcacacttgag-gggagtgttgtgtgcaagtgtgtcttatatgttccacatc 279  Q
    ||||| |||||||||||||||| || ||| |||||||||||||||||   |||||||| |||||||    
T  10073810 atgaattgatggactcacacttaagagggggtgttgtgtgcaagtgttagttatatgtcccacatc 10073745  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 16454727 - 16454788
Alignment:
Q  24 ggtccccctggctcccctcatgacccaacagtggtatcaaagctc-ggttccacgaagggta 84  Q
    ||||||||  ||||||||| ||||||||||||||||||| ||| | ||||| ||||||||||    
T  16454727 ggtcccccgagctcccctcgtgacccaacagtggtatcagagcccaggttcgacgaagggta 16454788  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 373
Target Start/End: Original strand, 21844923 - 21844968
Alignment:
Q  328 actttaaatgcaccctgtttgatttcacttggagttagatatgtat 373  Q
    |||||| ||| ||||||||||||||||||| |||||||||| ||||    
T  21844923 actttacatgaaccctgtttgatttcacttagagttagataggtat 21844968  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 279
Target Start/End: Original strand, 33605938 - 33606002
Alignment:
Q  216 tgaaatgatggactcacacttga-ggggagtgttgtgtgcaagtgtgtcttatatgttccacatc 279  Q
    |||| |||||||||||||||||| |||||||| ||||||||| |||   |||||||| |||||||    
T  33605938 tgaattgatggactcacacttgagggggagtgatgtgtgcaaatgtaagttatatgtcccacatc 33606002  T

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Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 293 - 381
Target Start/End: Original strand, 4985919 - 4986007
Alignment:
Q  293 ttgttacttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattatga 381  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||| | ||||||||||| |||||| ||| ||||||||||||    
T  4985919 ttgttacttagtgatgaatcatgtcacagtcctgaactttaaatgcatcctatatgatttcactttgagttatataggtattattatga 4986007  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 293 - 381
Target Start/End: Original strand, 4990017 - 4990105
Alignment:
Q  293 ttgttacttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattatga 381  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||| | ||||||||||| |||||| ||| ||||||||||||    
T  4990017 ttgttacttagtgatgaatcatgtcacagtcctgaactttaaatgcatcctatatgatttcactttgagttatataggtattattatga 4990105  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 285 - 368
Target Start/End: Original strand, 8316226 - 8316309
Alignment:
Q  285 tttctttcttgttacttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagata 368  Q
    ||||||||||||||||||| || |||||||||||||||||||||| ||||||||| | ||||||||||| ||||||||||||||    
T  8316226 tttctttcttgttacttagcgaggaatcatgtcacagtcctgaaccttaaatgcatcttgtttgatttctcttggagttagata 8316309  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 300 - 385
Target Start/End: Complemental strand, 19202371 - 19202286
Alignment:
Q  300 ttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattatgactgc 385  Q
    |||| |||||||||||||||| ||||  ||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||    
T  19202371 ttagcgacgaatcatgtcacattcctacactttaaatgcaccctgcttgatttcacttgcagttagataggtattattatgactgc 19202286  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 280 - 385
Target Start/End: Complemental strand, 12389474 - 12389372
Alignment:
Q  280 aaaaatttctttcttgttacttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattat 379  Q
    |||||||||||||||  || ||||||||||||||||||||    ||  ||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  12389474 aaaaatttctttctt--ta-ttagtgacgaatcatgtcactaaactacactttaaatgcaccctgtttgatttcacttggagtcagatatatattattat 12389378  T
Q  380 gactgc 385  Q
    | ||||    
T  12389377 ggctgc 12389372  T

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Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 300 - 383
Target Start/End: Complemental strand, 20578377 - 20578295
Alignment:
Q  300 ttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattatgact 383  Q
    |||||||||||||| |||||||||||| |||| | ||| ||| |||||||||||||||||||||||||| ||||||| ||||||    
T  20578377 ttagtgacgaatcacgtcacagtcctgcactt-acatgaaccttgtttgatttcacttggagttagataggtattataatgact 20578295  T

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Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 300 - 383
Target Start/End: Original strand, 39269434 - 39269516
Alignment:
Q  300 ttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtattattatgact 383  Q
    ||||||||||||| ||||||||||||  |||| | |||||| ||||||||||| ||||||||||||||| | ||||||||||||    
T  39269434 ttagtgacgaatcgtgtcacagtcctacactt-acatgcacactgtttgattttacttggagttagataggaattattatgact 39269516  T

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Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 1085622 - 1085584
Alignment:
Q  24 ggtccccctggctcccctcatgacccaacagtggtatca 62  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1085622 ggtccccctggctcccctcatgacccaacagtggtatca 1085584  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 5107744 - 5107695
Alignment:
Q  281 aaaatttctttcttgttacttagtgacgaatcatgtcacagtcctgaact 330  Q
    |||||||||||  ||||||||||||||||||||||||||| |||| ||||    
T  5107744 aaaatttcttttctgttacttagtgacgaatcatgtcacattccttaact 5107695  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 373
Target Start/End: Original strand, 13251950 - 13252022
Alignment:
Q  300 ttagtgacgaatcatgtcacagtcctgaactttaaatgcaccctgtttgatttcacttggagttagatatgtat 373  Q
    ||||||| | ||||||||||||||||| || | | ||| ||||| |||||||||||||||||||||||| ||||    
T  13251950 ttagtgatgtatcatgtcacagtcctgcacgt-acatgaaccctatttgatttcacttggagttagataggtat 13252022  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 37345878 - 37345925
Alignment:
Q  215 atgaaatgatggactcacacttga-ggggagtgttgtgtgcaagtgtg 261  Q
    ||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  37345878 atgaattgatgaactcacacttgaaggggagtgttgtgtgcaagtgtg 37345925  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 40094583 - 40094524
Alignment:
Q  222 gatggactcacacttgagg-ggagtgttgtgtgcaagtgtgtcttatatgttccacatca 280  Q
    ||||||||||||||| ||| |||||||||||||||||||||  |||||||| | ||||||    
T  40094583 gatggactcacactttaggaggagtgttgtgtgcaagtgtgagttatatgtccaacatca 40094524  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 279
Target Start/End: Original strand, 7553984 - 7554052
Alignment:
Q  215 atgaaatgatggactcacacttga-ggggag---tgttgtgtgcaagtgtgtcttatatgttccacatc 279  Q
    ||||| |||||||||||||||||| ||||||   |||||||||||||||||  |||||||| |||||||    
T  7553984 atgaattgatggactcacacttgagggggagtgttgttgtgtgcaagtgtgagttatatgtcccacatc 7554052  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 30244504 - 30244546
Alignment:
Q  24 ggtccccctggctcccctcatgacccaacagtggtatcaaagc 66  Q
    |||||| | ||||||||||||||||||||| ||||||||||||    
T  30244504 ggtccctcaggctcccctcatgacccaacaatggtatcaaagc 30244546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 30253723 - 30253760
Alignment:
Q  25 gtccccctggctcccctcatgacccaacagtggtatca 62  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  30253723 gtcccccaggctcccctcatgacccaacaatggtatca 30253760  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 37533370 - 37533310
Alignment:
Q  24 ggtccccctggctcccctcatgacccaacagtggtatcaaag-ctcggttccacgaagggt 83  Q
    ||||||||  ||||||||| ||||||||||||||||||| || | |||||| |||||||||    
T  37533370 ggtcccccgcgctcccctcgtgacccaacagtggtatcagagccccggttcgacgaagggt 37533310  T

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Target: scaffold0078 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 279
Target Start/End: Original strand, 5316 - 5384
Alignment:
Q  215 atgaaatgatggactcacacttgaggg-gagt---gttgtgtgcaagtgtgtcttatatgttccacatc 279  Q
    ||||| ||||||||||||||||||||| ||||   ||||||||||||||||  ||||||||||||||||    
T  5316 atgaactgatggactcacacttgagggagagttttgttgtgtgcaagtgtgagttatatgttccacatc 5384  T

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Target: scaffold0113 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 279
Target Start/End: Original strand, 39766 - 39865
Alignment:
Q  182 gatgaaagaacttcggtttgaggggatagaattatgaaatgatggactcacacttgagggg--agtgttgtgtgcaagtgtgtcttatatgttccacatc 279  Q
    ||||||||| |||| | ||||||||  || || ||||| ||||| ||||||||||||||||  | |||||||| ||||||||  |||||||| |||||||    
T  39766 gatgaaagagcttccgcttgaggggtgagcatgatgaattgatgaactcacacttgagggggaattgttgtgttcaagtgtgagttatatgtcccacatc 39865  T

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Target: scaffold0391 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 1688 - 1651
Alignment:
Q  25 gtccccctggctcccctcatgacccaacagtggtatca 62  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  1688 gtccccctagctcccctcgtgacccaacagtggtatca 1651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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