View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16958_low_7 (Length: 375)
Name: NF16958_low_7
Description: NF16958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16958_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 7 - 357
Target Start/End: Original strand, 15873603 - 15873953
Alignment:
| Q |
7 |
tcgaagaatataaggtgtgacgtcattgaacnnnnnnntaggaagccttagttctccattaaaccatttagacttgaacgaaatgttactccagttccac |
106 |
Q |
| |
|
||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15873603 |
tcgaaaaaaataaggtgtgacgtcattgaacaaaaaaataggaagccttagttctccattaaaccatttagacgtgaacgaaatgttactccagttccac |
15873702 |
T |
|
| Q |
107 |
tcatctgtcttatttgctaccactcgaattcctactgtctttagatcccgtatgctcttataagtattccaattcaaattaatttcttcctcatcaatat |
206 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15873703 |
tcatctgtcttatttgctaccacttgaattcctactgtctttagatcccgtatgctcttataagtattccaattcaaattaatttcttcctcatcaatat |
15873802 |
T |
|
| Q |
207 |
cttcttggtcttgagttgtatttttcctcatcgagttgtgttcacttccttcagattgtgtttccatttgaccatgttcttgaatgttggaaaccatatt |
306 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
15873803 |
cttcttggtcttgagttttatttttcctcatcgaattgtgttcacttccttcagattgtgtttccattttaccatgttcttcaatgttggaaaccatatt |
15873902 |
T |
|
| Q |
307 |
gggtggcaagtacactgaacgagcaaaatcaagtagatgaaagggcttagg |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15873903 |
gggtggcaagtacactgaacgagcaaaatcaagtatatgaaagggcttagg |
15873953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 356
Target Start/End: Complemental strand, 15921494 - 15921144
Alignment:
| Q |
7 |
tcgaagaatataaggtgtgacgtcattgaacnnnnnnntaggaagccttagttctccattaaaccatttagacttgaacgaaatgttactccagttccac |
106 |
Q |
| |
|
||||| || |||||||||||||||||| ||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15921494 |
tcgaaaaaaataaggtgtgacgtcattaaacaaaaacataggaagccttaattctccactaaaccatttagacttgaacgaaatgttactccagttccac |
15921395 |
T |
|
| Q |
107 |
tcatctgtcttatttgctaccactcgaattcctactgtctttagatcccgtatgctcttataagtattccaattcaaattaatttcttcctcatcaatat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| | | |
|
|
| T |
15921394 |
tcatctgtcttatttgctaccactcgaattcctactgtttttagatcccgtatgctcttataagtattccaattaaaattaatatcttcctcatcactgt |
15921295 |
T |
|
| Q |
207 |
cttcttggtcttgagttgtat-ttttcctcatcgagttgtgttcacttccttcagattgtgtttccatttgaccatgttcttgaatgttggaaaccatat |
305 |
Q |
| |
|
||||||||||||||||||||| |||||| ||| || | ||||||| |||||| | |||||||||||||| |||||| ||| | |||||||||| | | |
|
|
| T |
15921294 |
cttcttggtcttgagttgtattttttccgcattgaactatgttcacctccttccaactgtgtttccatttggccatgtccttcgacgttggaaacctttt |
15921195 |
T |
|
| Q |
306 |
tgggtggcaagtacactgaacgagcaaaatcaagtagatgaaagggcttag |
356 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
15921194 |
tgggtgacaagtacaatgaacgagcaaaatcgagtagatgacagggcttag |
15921144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 7 - 296
Target Start/End: Complemental strand, 15900444 - 15900161
Alignment:
| Q |
7 |
tcgaagaatataaggtgtgacgtcattgaacnnnnnnntaggaagccttagttctccattaaaccatttagacttgaacgaaatgttactccagttccac |
106 |
Q |
| |
|
||||| || |||||| || |||||||||||| |||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
15900444 |
tcgaaaaacataaggagttacgtcattgaacaaaaaaataggaagccttagttcgccactaaaccatttagacttgaaagaaatgttactccaggtccac |
15900345 |
T |
|
| Q |
107 |
tcatctgtcttatttgctaccactcgaattcctactgtctttagatcccgtatgctcttataagtattccaattcaaattaatttcttcctcatcaatat |
206 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||| || |||| ||| |
|
|
| T |
15900344 |
ttatctgtcttatttgctaccacttgaattcctactgtttttagatcccgtatgctcttataagtattccaattgaaatcaatttctggcttatcactat |
15900245 |
T |
|
| Q |
207 |
cttcttggtcttgagttgtatttttcctcatcgagttgtgttcacttccttcagattgtgtttccatttgaccatgttcttgaatgttgg |
296 |
Q |
| |
|
||| ||||||||| |||||||||| | || |||||||||||| ||||| ||||| |||||||||| ||||||||| || ||||| |
|
|
| T |
15900244 |
ctttttggtcttgctttgtattttt-----tgga-ttgtgttcactttcttcatattgtttttccatttgggcatgttcttcaaagttgg |
15900161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 7 - 180
Target Start/End: Original strand, 14060016 - 14060189
Alignment:
| Q |
7 |
tcgaagaatataaggtgtgacgtcattgaacnnnnnnntaggaagccttagttctccattaaaccatttagacttgaacgaaatgttactccagttccac |
106 |
Q |
| |
|
||||| || |||||||||||| ||||||||| ||||||| |||||||||||| | ||||| ||||||||||| |||| ||||||||| |||| |
|
|
| T |
14060016 |
tcgaaaaaaataaggtgtgacatcattgaacaaaaaaataggaagtcttagttctccactcaaccacttagacttgaaagaaacgttactccatgtccat |
14060115 |
T |
|
| Q |
107 |
tcatctgtcttatttgctaccactcgaattcctactgtctttagatcccgtatgctcttataagtattccaatt |
180 |
Q |
| |
|
||||||||||||||| | |||||||||||||| | | |||||||||| |||||| ||||||||||||||||| |
|
|
| T |
14060116 |
gcatctgtcttatttggtttcactcgaattcctattatttttagatcccttatgcttttataagtattccaatt |
14060189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 15880428 - 15880511
Alignment:
| Q |
23 |
gtgacgtcattgaacnnnnnnntaggaagccttagttctccattaaaccatttagacttgaacgaaatgttactccagttccac |
106 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15880428 |
gtgacgtcattgaacaaaaaaataggaagccttagttctccattaaaccatttagacttgaacgaaatgttactccagttccac |
15880511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 14048645 - 14048815
Alignment:
| Q |
7 |
tcgaagaatataaggtgtgacgtcattgaacnnnnnnntaggaagccttagttctccattaaaccatttagacttgaacgaaatgttactccagttccac |
106 |
Q |
| |
|
||||| || |||||| ||||| ||||||||| ||||||| | |||||||||| | ||||| ||||||||||| |||| ||||||||| |||| |
|
|
| T |
14048645 |
tcgaaaaaaataaggcgtgacatcattgaacaaaaaaataggaagtcgtagttctccactcaaccacttagacttgaaggaaacgttactccatgtccat |
14048744 |
T |
|
| Q |
107 |
tcatctgtcttatttgctaccactcgaattcctactgtctttagatcccgtatgctcttataagtattcca |
177 |
Q |
| |
|
||||||||||||||| | ||||||||||||||| | |||||||||| |||||| |||||||||||||| |
|
|
| T |
14048745 |
gcatctgtcttatttggtttcactcgaattcctaccatttttagatcccttatgcttttataagtattcca |
14048815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 355
Target Start/End: Complemental strand, 15900156 - 15900117
Alignment:
| Q |
316 |
gtacactgaacgagcaaaatcaagtagatgaaagggctta |
355 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
15900156 |
gtacactgaacgaccaaaatcaagtaaatgaaagggctta |
15900117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University