View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16958_low_9 (Length: 367)
Name: NF16958_low_9
Description: NF16958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16958_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 24 - 357
Target Start/End: Original strand, 10002213 - 10002532
Alignment:
| Q |
24 |
ttattaatgatttcttttattcaaattcaaaagtcttctcttgtctgttgaaatactatgattttattattgtctactagttatnnnnnnnnnnnnnnnn |
123 |
Q |
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| T |
10002213 |
ttattattgatttcttttattcaaattcaaaagtcttctcttgtctgttgaaatactatgattttattattgtctactagttataaaaaa---------- |
10002302 |
T |
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| Q |
124 |
nntggaatatgtgcaactataactttgtcaaaacgtgctttcatgttggtctagggaaggtacacaatccaaataaaatattacaactggttgagaccta |
223 |
Q |
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| T |
10002303 |
--tggaatatgtgcaactataaatttgtcaaaacgtgctttcatgttg-tctagggaaggtacacaatccaaataaaatattacaactggttgagaccta |
10002399 |
T |
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| Q |
224 |
taatataatgcaagatcatacctataataattttagtgattttatcaaatatatttaatttattaaagtgttcatattttaatggtgtaatatttccttt |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10002400 |
taatataatgcaagatcatacctataataattttagtgatgttatcaaatatatttaatttattaaagtgttcatattttaatggtgtaatatttccttt |
10002499 |
T |
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| Q |
324 |
ggtttgacttttactctatattctttttcctatg |
357 |
Q |
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| T |
10002500 |
gg-ttgacttttactctatattctttttcctatg |
10002532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 145 - 277
Target Start/End: Original strand, 9996384 - 9996518
Alignment:
| Q |
145 |
actttgtcaaaa-cgtgctttcatgttggtctagggaaggtacacaatccaaataaaatattacaactggtt--gagacctataatataatgcaagatca |
241 |
Q |
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| T |
9996384 |
actttgtcaaaaacgtgctttcatgttgg-ctatggaaggtacgcaatccaaataaaaaattacatgtggttgagagacctataatataatgcaagatct |
9996482 |
T |
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| Q |
242 |
tacctataataattttagtgattttatcaaatatat |
277 |
Q |
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| T |
9996483 |
tacccttatgatttttagtgatgttatcaaatatat |
9996518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 9996255 - 9996307
Alignment:
| Q |
20 |
ttgattattaatgatttcttttattcaaattcaaaagtcttctcttgtctgtt |
72 |
Q |
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| T |
9996255 |
ttgattattgatgatttcttgtattcaaattcaaaggtcttctcttgtgtgtt |
9996307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 306
Target Start/End: Original strand, 9996578 - 9996615
Alignment:
| Q |
269 |
caaatatatttaatttattaaagtgttcatattttaat |
306 |
Q |
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| T |
9996578 |
caaatatatttaatttactaaagtattcatattttaat |
9996615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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