View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16959_high_4 (Length: 312)

Name: NF16959_high_4
Description: NF16959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16959_high_4
NF16959_high_4
[»] chr6 (14 HSPs)
chr6 (18-292)||(30960555-30960829)
chr6 (18-293)||(30944549-30944824)
chr6 (18-288)||(30985877-30986147)
chr6 (18-288)||(30992041-30992311)
chr6 (18-292)||(30954810-30955084)
chr6 (18-292)||(31224060-31224334)
chr6 (18-292)||(31201622-31201896)
chr6 (18-292)||(31189815-31190089)
chr6 (18-292)||(31145757-31146031)
chr6 (45-292)||(31172097-31172344)
chr6 (18-135)||(31131543-31131660)
chr6 (34-170)||(31213913-31214049)
chr6 (31-140)||(31229493-31229602)
chr6 (183-244)||(31131673-31131734)


Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 30960829 - 30960555
Alignment:
Q  18 aaattcatatacaagagcttttttacggccttcaaaacaaaatccaagaagggcgacgacattaacatgtgaggttctagtaatactagcaacctcgtta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  30960829 aaattcatatacaagagcttttttacggccttcaaaacaaaatccaagaagggtgacaacattaacatgtgaggttctagtaatactagcaacctcgtta 30960730  T
Q  118 ataaattcttcaccgtttccttttgatgcattcaacatcttcaccgccacaagacaaccattggataactttcctttgtacacagcaacaaaaccccctt 217  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||  |||||||||||||||| ||| || |||| |||||||    
T  30960729 ataaattcttcaccgtttccttttgatgcattcaaaatcttcactgccacatgacaaccattcaataactttcctttgtagacaacaccaaatccccctt 30960630  T
Q  218 gaccaagtttaattttgaatgagtttgtaannnnnnnnatttctgaaaatttatatcttttttgcaatagagctc 292  Q
    ||||||||||||||||||| |||||||| |        |||||||||||||||||||||||||||| ||||||||    
T  30960629 gaccaagtttaattttgaacgagtttgtcattttctttatttctgaaaatttatatcttttttgcagtagagctc 30960555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 30944824 - 30944549
Alignment:
Q  18 aaattcatatacaagagcttttttacggccttcaaaacaaaatccaagaagggcgacgacattaacatgtgaggttctagtaatactagcaacctcgtta 117  Q
    |||||||||||| |||||||| ||||  |||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||| |||||| |||    
T  30944824 aaattcatatacgagagctttattacaaccttcaaaacaaaatccaagaagggtaacaacattaacatgtgaggttctagtaatactagtaacctcatta 30944725  T
Q  118 ataaattcttcaccgtttccttttgatgcattcaacatcttcaccgccacaagacaaccattggataactttcctttgtacacagcaacaaaaccccctt 217  Q
    ||||| ||||||||  ||||||| ||||||||||| |||||||| || |||||| |||||||| ||||||||||||||||||||||| ||||||||||||    
T  30944724 ataaagtcttcaccaattcctttcgatgcattcaaaatcttcactgctacaagagaaccattgaataactttcctttgtacacagcaccaaaaccccctt 30944625  T
Q  218 gaccaagtttaattttgaatgagtttgtaannnnnnnnatttctgaaaatttatatcttttttgcaatagagctct 293  Q
    |||||||||||||||||||||||||||| |        |||||||||||||||||||||||||| ||||| |||||    
T  30944624 gaccaagtttaattttgaatgagtttgtcattttctttatttctgaaaatttatatcttttttgtaatagtgctct 30944549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 30986147 - 30985877
Alignment:
Q  18 aaattcatatacaagagcttttttacggccttcaaaacaaaatccaagaagggcgacgacattaacatgtgaggttctagtaatactagcaacctcgtta 117  Q
    |||||||||||  |||||||| ||||  ||||||||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||| |||    
T  30986147 aaattcatatatgagagctttattacaaccttcaaaacaaaatccaagaaggttaacaacattaacatgtgaggttctagtaatactagcaacctcatta 30986048  T
Q  118 ataaattcttcaccgtttccttttgatgcattcaacatcttcaccgccacaagacaaccattggataactttcctttgtacacagcaacaaaaccccctt 217  Q
    ||||| |||||||| ||||||||||||||||| || |||||||| || |||||| |||||||| ||||||||||||||||||| ||| ||||||||||||    
T  30986047 ataaagtcttcaccatttccttttgatgcatttaatatcttcactgctacaagagaaccattgaataactttcctttgtacaccgcaccaaaaccccctt 30985948  T
Q  218 gaccaagtttaattttgaatgagtttgtaannnnnnnnatttctgaaaatttatatcttttttgcaataga 288  Q
    |||||| |||||||||||||||||||||||        ||||||||||| |||||||||||||||||||||    
T  30985947 gaccaactttaattttgaatgagtttgtaattttctttatttctgaaaacttatatcttttttgcaataga 30985877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 30992311 - 30992041
Alignment:
Q  18 aaattcatatacaagagcttttttacggccttcaaaacaaaatccaagaagggcgacgacattaacatgtgaggttctagtaatactagcaacctcgtta 117  Q
    |||||||||||  |||||||| ||||  ||||||||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||| |||    
T  30992311 aaattcatatatgagagctttattacaaccttcaaaacaaaatccaagaaggttaacaacattaacatgtgaggttctagtaatactagcaacctcatta 30992212  T
Q  118 ataaattcttcaccgtttccttttgatgcattcaacatcttcaccgccacaagacaaccattggataactttcctttgtacacagcaacaaaaccccctt 217  Q
    ||||| |||||||| ||||||||||||||||| || |||||||| || |||||| |||||||| ||||||||||||||||||| ||| ||||||||||||    
T  30992211 ataaagtcttcaccatttccttttgatgcatttaatatcttcactgctacaagagaaccattgaataactttcctttgtacaccgcaccaaaaccccctt 30992112  T
Q  218 gaccaagtttaattttgaatgagtttgtaannnnnnnnatttctgaaaatttatatcttttttgcaataga 288  Q
    |||||| |||||||||||||||||||||||        ||||||||||| |||||||||||||||||||||    
T  30992111 gaccaactttaattttgaatgagtttgtaattttctttatttctgaaaacttatatcttttttgcaataga 30992041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 30955084 - 30954810
Alignment:
Q  18 aaattcatatacaagagcttttttacggccttcaaaacaaaatccaagaagggcgacgacattaacatgtgaggttctagtaatactagcaacctcgtta 117  Q
    |||||||||||  |||||||| || |  |||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||| |||||| |||    
T  30955084 aaattcatatatgagagctttattgcaaccttcaaaacaaaatccaagaagggtaacaacattaacatgtgaggttctagtaatactagtaacctcatta 30954985  T
Q  118 ataaattcttcaccgtttccttttgatgcattcaacatcttcaccgccacaagacaaccattggataactttcctttgtacacagcaacaaaaccccctt 217  Q
    |||||||||||||| ||||||||||||||||| | ||||||||| ||||||||  |||||||   || ||||||||||||||||||| | ||||||||||    
T  30954984 ataaattcttcaccatttccttttgatgcatttagcatcttcactgccacaagggaaccattcactagctttcctttgtacacagcaccgaaaccccctt 30954885  T
Q  218 gaccaagtttaattttgaatgagtttgtaannnnnnnnatttctgaaaatttatatcttttttgcaatagagctc 292  Q
    |||||||||||||||||||||| ||||| |        |||||||||||||||||||||||||||| ||||||||    
T  30954884 gaccaagtttaattttgaatgaatttgttattttctttatttctgaaaatttatatcttttttgcactagagctc 30954810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 31224334 - 31224060
Alignment:
Q  18 aaattcatatacaagagcttttttacggccttcaaaacaaaatccaagaagggcgacgacattaacatgtgaggttctagtaatactagcaacctcgtta 117  Q
    |||||||||||| |||||||||||   |||||||||||||||||||||||||| ||| ||||||||||| |||||||||| ||||||||||||||| |||    
T  31224334 aaattcatatacgagagcttttttgttgccttcaaaacaaaatccaagaagggtgacaacattaacatgagaggttctagaaatactagcaacctcatta 31224235  T
Q  118 ataaattcttcaccgtttccttttgatgcattcaacatcttcaccgccacaagacaaccattggataactttcctttgtacacagcaacaaaaccccctt 217  Q
    |||||||| ||||| |||||||||||| ||||||| |||||||| |||||||||||||||||  |||||||||||||||||||| || ||||||||||||    
T  31224234 ataaattcctcaccatttccttttgatacattcaatatcttcactgccacaagacaaccattaaataactttcctttgtacacaacaccaaaaccccctt 31224135  T
Q  218 gaccaagtttaattttgaatgagtttgtaannnnnnnnatttctgaaaatttatatcttttttgcaatagagctc 292  Q
    | || || |||   || || |||||||| |        ||||||||| ||||||||||||| |||||||||||||    
T  31224134 gcccgagcttatcctttaacgagtttgtcatgttctttatttctgaatatttatatcttttctgcaatagagctc 31224060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 31201622 - 31201896
Alignment:
Q  18 aaattcatatacaagagcttttttacggccttcaaaacaaaatccaagaagggcgacgacattaacatgtgaggttctagtaatactagcaacctcgtta 117  Q
    |||||||||||  || ||||||||   |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||    
T  31201622 aaattcatatatgagtgctttttttgtgccttcaaaacaaaatccaagaagggtgacaacattaacatgtgaggttctagtaatactagcaacctcatta 31201721  T
Q  118 ataaattcttcaccgtttccttttgatgcattcaacatcttcaccgccacaagacaaccattggataactttcctttgtacacagcaacaaaaccccctt 217  Q
    |||||||||||||| |||||||| |||| |||||| ||||| | |||  |  | ||||||||| |||||||||||||||||||| || ||||||||||||    
T  31201722 ataaattcttcaccatttcctttggatgaattcaatatctttatcgcagcgtggcaaccattgaataactttcctttgtacacaacaccaaaaccccctt 31201821  T
Q  218 gaccaagtttaattttgaatgagtttgtaannnnnnnnatttctgaaaatttatatcttttttgcaatagagctc 292  Q
    ||||||||||||  ||||| |||||||| |        ||||||||| ||||||||||||| ||||| |||||||    
T  31201822 gaccaagtttaaccttgaaagagtttgtcattttctttatttctgaatatttatatcttttctgcaacagagctc 31201896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 31189815 - 31190089
Alignment:
Q  18 aaattcatatacaagagcttttttacggccttcaaaacaaaatccaagaagggcgacgacattaacatgtgaggttctagtaatactagcaacctcgtta 117  Q
    ||||||||||| ||| ||||||||   |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||| || |||    
T  31189815 aaattcatatataagtgctttttttttgccttcaaaacaaaatccaagaagggtgacaacattaacatgtgaggttctagtaatactagaaacttcatta 31189914  T
Q  118 ataaattcttcaccgtttccttttgatgcattcaacatcttcaccgccacaagacaaccattggataactttcctttgtacacagcaacaaaaccccctt 217  Q
    ||||||||||||||||||||||| |||| |||||| ||||| |  || |||  ||||||||||  ||||||||||||||||||| || ||||||||||||    
T  31189915 ataaattcttcaccgtttcctttggatgaattcaatatctttatagcaacatcacaaccattgagtaactttcctttgtacacaacaccaaaaccccctt 31190014  T
Q  218 gaccaagtttaattttgaatgagtttgtaannnnnnnnatttctgaaaatttatatcttttttgcaatagagctc 292  Q
    ||||||||||||  ||||| |||| ||| |        | ||||||| ||||||||||||| |||||||||||||    
T  31190015 gaccaagtttaaccttgaaagagtctgtcattttctttagttctgaatatttatatcttttctgcaatagagctc 31190089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 31145757 - 31146031
Alignment:
Q  18 aaattcatatacaagagcttttttacggccttcaaaacaaaatccaagaagggcgacgacattaacatgtgaggttctagtaatactagcaacctcgtta 117  Q
    |||||||||||  || ||||||||   ||||||||||||||||||||||||||  || || |||||||||||||||||||||||||| | |||||| |||    
T  31145757 aaattcatatatgagtgctttttttgtgccttcaaaacaaaatccaagaagggtaacaacgttaacatgtgaggttctagtaatactggaaacctcatta 31145856  T
Q  118 ataaattcttcaccgtttccttttgatgcattcaacatcttcaccgccacaagacaaccattggataactttcctttgtacacagcaacaaaaccccctt 217  Q
    ||||||||||||||||||||||| |||| |||||| ||||| |  || ||| ||||||||||| |||||||||||||||||||| || ||||||| ||||    
T  31145857 ataaattcttcaccgtttcctttggatgaattcaatatctttatagcgacatgacaaccattgaataactttcctttgtacacaacaccaaaaccacctt 31145956  T
Q  218 gaccaagtttaattttgaatgagtttgtaannnnnnnnatttctgaaaatttatatcttttttgcaatagagctc 292  Q
    ||||||||||||  ||||| |||| ||| |        ||||||||| ||||||||||||| |||||||||||||    
T  31145957 gaccaagtttaaccttgaaagagtctgtcattttctttatttctgaatatttatatcttttctgcaatagagctc 31146031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 45 - 292
Target Start/End: Original strand, 31172097 - 31172344
Alignment:
Q  45 gccttcaaaacaaaatccaagaagggcgacgacattaacatgtgaggttctagtaatactagcaacctcgttaataaattcttcaccgtttccttttgat 144  Q
    ||||||||||||||||||||||||||  || || ||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||| |||    
T  31172097 gccttcaaaacaaaatccaagaagggtaacaacgttaacatgtgaggttctagaaatactagaaacctcattaataaattcttcaccgtttcctttggat 31172196  T
Q  145 gcattcaacatcttcaccgccacaagacaaccattggataactttcctttgtacacagcaacaaaacccccttgaccaagtttaattttgaatgagtttg 244  Q
    | |||||| ||||| |  || ||  ||||||||||| |||||||||||||||||||| || |||| || ||||||||||||||||  ||||| |||||||    
T  31172197 ggattcaatatctttatagcaacgtgacaaccattgaataactttcctttgtacacaacaccaaagcctccttgaccaagtttaaccttgaaagagtttg 31172296  T
Q  245 taannnnnnnnatttctgaaaatttatatcttttttgcaatagagctc 292  Q
    | |        ||||| ||||||||||||||||| ||||||| |||||    
T  31172297 tcattttctttatttcagaaaatttatatcttttctgcaataaagctc 31172344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 31131543 - 31131660
Alignment:
Q  18 aaattcatatacaagagcttttttacggccttcaaaacaaaatccaagaagggcgacgacattaacatgtgaggttctagtaatactagcaacctcgtta 117  Q
    ||||||||||||||||||||||||   ||||||  |||||||||||||||||| ||| | ||||||||| |||||||||| ||||||||||||||| |||    
T  31131543 aaattcatatacaagagcttttttggtgccttcgtaacaaaatccaagaagggtgacaatattaacatgcgaggttctagaaatactagcaacctcatta 31131642  T
Q  118 ataaattcttcaccgttt 135  Q
    ||||||||||||||||||    
T  31131643 ataaattcttcaccgttt 31131660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 170
Target Start/End: Complemental strand, 31214049 - 31213913
Alignment:
Q  34 gcttttttacggccttcaaaacaaaatccaagaagggcgacgacattaacatgtgaggttctagtaatactagcaacctcgttaataaattcttcaccgt 133  Q
    |||||||| || || ||||||||||||||||||||||| || |||||||| || |||||| | || || |||| ||||||||| |||||||||||||| |    
T  31214049 gcttttttgcgaccgtcaaaacaaaatccaagaagggcaacaacattaacgtgagaggtttttgttatgctagaaacctcgttcataaattcttcacctt 31213950  T
Q  134 ttccttttgatgcattcaacatcttcaccgccacaag 170  Q
    ||||||| ||||| || || |||||||| ||||||||    
T  31213949 ttcctttggatgcgtttaatatcttcacggccacaag 31213913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 31229602 - 31229493
Alignment:
Q  31 agagcttttttacggccttcaaaacaaaatccaagaagggcgacgacattaacatgtgaggttctagtaatactagcaacctcgttaataaattcttcac 130  Q
    ||||||||||| || ||||||||||||||||||||||||||||  |||||||| || |||||| ||||||| |||| |||||| || |||||||| ||||    
T  31229602 agagcttttttccgtccttcaaaacaaaatccaagaagggcgaaaacattaacgtgagaggttttagtaatgctagaaacctcattcataaattcatcac 31229503  T
Q  131 cgtttccttt 140  Q
    | ||||||||    
T  31229502 catttccttt 31229493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 31131673 - 31131734
Alignment:
Q  183 taactttcctttgtacacagcaacaaaacccccttgaccaagtttaattttgaatgagtttg 244  Q
    ||||||||||||| |||||||| ||||||| ||||||||||||||||  |||||||||||||    
T  31131673 taactttcctttgcacacagcaccaaaacctccttgaccaagtttaaccttgaatgagtttg 31131734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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