View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16959_high_6 (Length: 261)

Name: NF16959_high_6
Description: NF16959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16959_high_6
NF16959_high_6
[»] chr2 (2 HSPs)
chr2 (9-102)||(27329178-27329271)
chr2 (16-91)||(27446698-27446773)
[»] chr8 (1 HSPs)
chr8 (13-91)||(18839701-18839779)


Alignment Details
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 27329271 - 27329178
Alignment:
Q  9 cattcaagttgaagaagaatttacatgccacagcacttgagttcagactcttgagacaacatggttatgatatatctacaggtcattaaatcta 102  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| ||||||||||||||| ||||||    
T  27329271 cattcaagttgaagaagaatttacatgccacagcacgtgagttcagacttttgaggcaacatggttatgatttatctacaggtcattgaatcta 27329178  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 27446773 - 27446698
Alignment:
Q  16 gttgaagaagaatttacatgccacagcacttgagttcagactcttgagacaacatggttatgatatatctacaggt 91  Q
    ||||||||| || ||| |||||||| ||||  ||||||||||||| || |||||||||||| ||||||||||||||    
T  27446773 gttgaagaataacttatatgccacatcactcaagttcagactcttaaggcaacatggttataatatatctacaggt 27446698  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 18839701 - 18839779
Alignment:
Q  13 caagttgaagaagaatttacatgccacagcacttgagttcagactcttgagacaacatggttatgatatatctacaggt 91  Q
    ||||||||||||||| || ||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||    
T  18839701 caagttgaagaagaacttgcatgccacagcactcaagttcagactcttgaggcaacatggttatgatatatctacaggt 18839779  T

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