View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16959_low_1 (Length: 740)

Name: NF16959_low_1
Description: NF16959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16959_low_1
NF16959_low_1
[»] chr6 (6 HSPs)
chr6 (13-341)||(33447315-33447641)
chr6 (486-725)||(33446848-33447087)
chr6 (424-506)||(33447092-33447174)
chr6 (366-422)||(33447218-33447274)
chr6 (571-646)||(10244454-10244529)
chr6 (562-647)||(33819885-33819970)
[»] chr8 (3 HSPs)
chr8 (553-643)||(32089196-32089286)
chr8 (656-720)||(32077184-32077249)
chr8 (553-617)||(13267864-13267928)
[»] chr4 (3 HSPs)
chr4 (562-646)||(43365879-43365963)
chr4 (555-643)||(51871674-51871761)
chr4 (553-643)||(15562185-15562275)
[»] chr7 (6 HSPs)
chr7 (562-617)||(3565564-3565619)
chr7 (553-620)||(45871779-45871846)
chr7 (553-646)||(29366516-29366609)
chr7 (568-620)||(40717634-40717686)
chr7 (564-643)||(27567411-27567490)
chr7 (656-720)||(3565381-3565446)
[»] chr2 (2 HSPs)
chr2 (564-646)||(35695387-35695469)
chr2 (553-628)||(35021155-35021230)
[»] chr1 (6 HSPs)
chr1 (553-646)||(26767690-26767783)
chr1 (564-646)||(7191945-7192027)
chr1 (656-719)||(7192116-7192180)
chr1 (568-628)||(41666253-41666313)
chr1 (553-620)||(43416300-43416367)
chr1 (570-646)||(43670862-43670938)
[»] scaffold0122 (1 HSPs)
scaffold0122 (553-646)||(17693-17786)
[»] scaffold0633 (1 HSPs)
scaffold0633 (568-628)||(8916-8976)
[»] chr5 (1 HSPs)
chr5 (561-646)||(40324411-40324496)
[»] chr3 (1 HSPs)
chr3 (553-642)||(38216153-38216242)


Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-169; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 13 - 341
Target Start/End: Complemental strand, 33447641 - 33447315
Alignment:
Q  13 aatatctcattaatgtgtaacatataagttaagcaaatgcttaagacaaataaaacaaataaatcaaattctaaactttgagatttgaaattaatgagaa 112  Q
    ||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33447641 aatatctcattaatgt--aacatagaagttaagcaaatgcttaagacaaataaaacaaataaatcaaattctaaactttgaggtttgaaattaatgagaa 33447544  T
Q  113 tttcaaatcatgaattgaaagagatgcatgggaatgtttctgtgttggtgaaacattgctggaacgcggagagagaaagtagaatgtcgtgggtaggact 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33447543 tttcaaatcatgaattgaaagagatgcatgggaatgtttctgtgttggtgaaacattgctggaacgcggagagagaaagtagaatgtcgtgggtaggact 33447444  T
Q  213 agtgcaatattggactacccttatttgagttttgattaattgagtgattaatttactagaatagaaataaggaatttcatacatcaacgtgcatgcctga 312  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33447443 agtgcaatattggactacccttatttgagttttgattaattgagcgattaatttactagaatagaaataaggaatttcatacatcaacgtgcatgcctga 33447344  T
Q  313 ttgaggaaaaaataacttggggctagttg 341  Q
    |||||||||||||||||| ||||||||||    
T  33447343 ttgaggaaaaaataactttgggctagttg 33447315  T

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Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 486 - 725
Target Start/End: Complemental strand, 33447087 - 33446848
Alignment:
Q  486 taaagaagtaaaatgaaaatacttgatttcaaaaatgagataacatgtttttaatgaagatacttgatttggtctttctatctaatattttgtctaaaat 585  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33447087 taaagaagtaaaatgaaaatacttgatttcaaaaatgagataacatgtttttaatgaagatacttgatttggtctttttatctaatattttgtctaaaat 33446988  T
Q  586 atgttgatatatcatgtttttaatcaagtttttaagaaaatttctttacgatttcatcgataatagagataccaaaactatcaaattttaaaatacggga 685  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33446987 atgttgatatatcatgtttttaattaagtttttaagaaaatttctttacgatttcatcgataatagagagaccaaaactatcaaattttaaaatacggga 33446888  T
Q  686 tcaattccacaaaaagatataaatagggggaccaactatg 725  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33446887 tcaattccacaaaaagatataaatagggggaccaactatg 33446848  T

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Target: chr6; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 424 - 506
Target Start/End: Complemental strand, 33447174 - 33447092
Alignment:
Q  424 atatgttgataataattgaaatgctaacttattctttctttgaaggttattagatttctcaataaagaagtaaaatgaaaata 506  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33447174 atatgttgataataattgaaatgttaacttattctttctttgaaggttattagatttctcattaaagaagtaaaatgaaaata 33447092  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 366 - 422
Target Start/End: Complemental strand, 33447274 - 33447218
Alignment:
Q  366 ttattctcactccttctgtctgttttcttcttttcaacatgactatgttgcaacaaa 422  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  33447274 ttattctcactccttctgtctgttttcctcttttcaacatgaccatgttgcaacaaa 33447218  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 571 - 646
Target Start/End: Complemental strand, 10244529 - 10244454
Alignment:
Q  571 tattttgtctaaaatatgttgatatatcatgtttttaatcaagtttttaagaaaatttctttacgatttcatcgat 646  Q
    |||||||||||||||||| ||||||| |||||||| ||| ||||||||||| || |||  ||||||||||||||||    
T  10244529 tattttgtctaaaatatgatgatataacatgttttaaatgaagtttttaaggaagttttcttacgatttcatcgat 10244454  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 562 - 647
Target Start/End: Original strand, 33819885 - 33819970
Alignment:
Q  562 tctatctaatattttgtctaaaatatgttgatatatcatgtttttaatcaagtttttaagaaaatttctttacgatttcatcgata 647  Q
    |||||| |||||||||||||||||||  |||||    ||||||| ||| |||||||||||  |||||  |||| ||||||||||||    
T  33819885 tctatcaaatattttgtctaaaatattgtgatacgatatgttttaaatgaagtttttaagggaattttattacaatttcatcgata 33819970  T

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Target: chr8 (Bit Score: 51; Significance: 8e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 553 - 643
Target Start/End: Complemental strand, 32089286 - 32089196
Alignment:
Q  553 tttggtctttctatctaatattttgtctaaaatatgttgatatatcatgtttttaatcaagtttttaagaaaatttctttacgatttcatc 643  Q
    |||||||| ||||||||||| ||||||| ||||||| ||||||| |||||||| ||| ||||||||| ||||||||  |||||||||||||    
T  32089286 tttggtctctctatctaataatttgtcttaaatatggtgatataacatgttttaaatgaagtttttatgaaaattttattacgatttcatc 32089196  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 656 - 720
Target Start/End: Complemental strand, 32077249 - 32077184
Alignment:
Q  656 accaaaactatcaaattttaaaatacggg-atcaattccacaaaaagatataaatagggggaccaa 720  Q
    ||||||||||||||| ||||||||| ||| |||||||  ||||||||||  |||||||||||||||    
T  32077249 accaaaactatcaaactttaaaatagggggatcaattttacaaaaagatgaaaatagggggaccaa 32077184  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 553 - 617
Target Start/End: Original strand, 13267864 - 13267928
Alignment:
Q  553 tttggtctttctatctaatattttgtctaaaatatgttgatatatcatgtttttaatcaagtttt 617  Q
    |||||||  ||| ||||||||||||| ||||||||| ||||||| |||||||| ||| |||||||    
T  13267864 tttggtccctctttctaatattttgtttaaaatatggtgatataacatgttttaaatgaagtttt 13267928  T

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Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 562 - 646
Target Start/End: Original strand, 43365879 - 43365963
Alignment:
Q  562 tctatctaatattttgtctaaaatatgttgatatatcatgtttttaatcaagtttttaagaaaatttctttacgatttcatcgat 646  Q
    ||||||||||||||||||||||||||| |||| || |||||||| ||| |||||||||||  |||||  ||||||||||||||||    
T  43365879 tctatctaatattttgtctaaaatatgatgatgtaacatgttttaaatgaagtttttaagggaattttcttacgatttcatcgat 43365963  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 555 - 643
Target Start/End: Original strand, 51871674 - 51871761
Alignment:
Q  555 tggtctttctatctaatattttgtctaaaatatgttgatatatcatgtttttaatcaagtttttaagaaaatttctttacgatttcatc 643  Q
    |||||| ||||||||||| ||| ||||||||||| ||||||| ||||||||  || ||| || |||| || |||| |||||||||||||    
T  51871674 tggtctctctatctaataatttatctaaaatatggtgatataacatgttttagatgaagattataaggaattttc-ttacgatttcatc 51871761  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 553 - 643
Target Start/End: Original strand, 15562185 - 15562275
Alignment:
Q  553 tttggtctttctatctaatattttgtctaaaatatgttgatatatcatgtttttaatcaagtttttaagaaaatttctttacgatttcatc 643  Q
    |||||||  ||||||||||| |||||||||||||   ||||||| |||||||| | | ||||||||||   |||||  |||||||||||||    
T  15562185 tttggtccctctatctaataatttgtctaaaatacagtgatataacatgttttaattgaagtttttaaatgaattttcttacgatttcatc 15562275  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 562 - 617
Target Start/End: Complemental strand, 3565619 - 3565564
Alignment:
Q  562 tctatctaatattttgtctaaaatatgttgatatatcatgtttttaatcaagtttt 617  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||||    
T  3565619 tctatctaatattttgtctaaaatatggtgatataacatgttttaaatgaagtttt 3565564  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 553 - 620
Target Start/End: Original strand, 45871779 - 45871846
Alignment:
Q  553 tttggtctttctatctaatattttgtctaaaatatgttgatatatcatgtttttaatcaagtttttaa 620  Q
    |||||||  ||||| ||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||    
T  45871779 tttggtccctctatataatattttgtctaaaatatggtgatataacatgttttaaatgaagtttttaa 45871846  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 553 - 646
Target Start/End: Complemental strand, 29366609 - 29366516
Alignment:
Q  553 tttggtctttctatctaatattttgtctaaaatatgttgatatatcatgtttttaatcaagtttttaagaaaatttctttacgatttcatcgat 646  Q
    ||||||| ||||||| |||||||||||||||||||  ||||||   ||||||| ||| ||||||| || | |||||  |||| |||||||||||    
T  29366609 tttggtcattctatcaaatattttgtctaaaatattgtgatatgatatgttttaaataaagttttcaacataattttgttacaatttcatcgat 29366516  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 568 - 620
Target Start/End: Complemental strand, 40717686 - 40717634
Alignment:
Q  568 taatattttgtctaaaatatgttgatatatcatgtttttaatcaagtttttaa 620  Q
    ||||||||| ||||||||||| ||||||| |||||||| ||| ||||||||||    
T  40717686 taatattttatctaaaatatgatgatataacatgttttaaataaagtttttaa 40717634  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 643
Target Start/End: Original strand, 27567411 - 27567490
Alignment:
Q  564 tatctaatattttgtctaaaatatgttgatatatcatgtttttaatcaagtttttaagaaaatttctttacgatttcatc 643  Q
    ||||||| ||||||||||||||||| ||||||| |||||||| |||    |||| ||| ||||||  |||||||||||||    
T  27567411 tatctaaaattttgtctaaaatatgatgatataacatgttttaaatggtattttcaaggaaattttcttacgatttcatc 27567490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 720
Target Start/End: Complemental strand, 3565446 - 3565381
Alignment:
Q  656 accaaaactatcaaattttaaaatacg-ggatcaattccacaaaaagatataaatagggggaccaa 720  Q
    |||||| ||||| |||||||||||| | ||| ||||| ||||||||||| ||||||||| ||||||    
T  3565446 accaaatctatcgaattttaaaataggaggaccaatttcacaaaaagatgtaaatagggagaccaa 3565381  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 564 - 646
Target Start/End: Original strand, 35695387 - 35695469
Alignment:
Q  564 tatctaatattttgtctaaaatatgttgatatatcatgtttttaatcaagtttttaagaaaatttctttacgatttcatcgat 646  Q
    ||||||||||||| ||||||||||| ||||||| |||||||  ||| |||| || ||| ||||||  ||||||||||||||||    
T  35695387 tatctaatattttatctaaaatatggtgatataacatgtttcaaatgaagtattcaaggaaattttcttacgatttcatcgat 35695469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 553 - 628
Target Start/End: Complemental strand, 35021230 - 35021155
Alignment:
Q  553 tttggtctttctatctaatattttgtctaaaatatgttgatatatcatgtttttaatcaagtttttaagaaaattt 628  Q
    ||||||| ||||||| ||| |||||||||||||||  ||||||   ||||||| ||| ||||||| ||||||||||    
T  35021230 tttggtccttctatcaaattttttgtctaaaatattgtgatatgatatgttttaaatgaagttttcaagaaaattt 35021155  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 553 - 646
Target Start/End: Original strand, 26767690 - 26767783
Alignment:
Q  553 tttggtctttctatctaatattttgtctaaaatatgttgatatatcatgtttttaatcaagtttttaagaaaatttctttacgatttcatcgat 646  Q
    |||||||  ||||| | ||||||||||||||||||| ||||||| |||||| | ||| |||||||||||||| |||  ||| ||||| ||||||    
T  26767690 tttggtccctctatattatattttgtctaaaatatgatgatataacatgttctaaatgaagtttttaagaaagttttcttatgattttatcgat 26767783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 564 - 646
Target Start/End: Original strand, 7191945 - 7192027
Alignment:
Q  564 tatctaatattttgtctaaaatatgttgatatatcatgtttttaatcaagtttttaagaaaatttctttacgatttcatcgat 646  Q
    ||||||| ||||||||||||||||| ||||||| |||||||| |||  |||||| ||   ||||  |||||||||||||||||    
T  7191945 tatctaaaattttgtctaaaatatggtgatataacatgttttaaatggagttttcaaaggaattattttacgatttcatcgat 7192027  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 656 - 719
Target Start/End: Original strand, 7192116 - 7192180
Alignment:
Q  656 accaaaactatcaaattttaaaatacggg-atcaattccacaaaaagatataaatagggggacca 719  Q
    ||||||||| || |||||||||||| ||| |||||||||||| ||||||  ||||||||||||||    
T  7192116 accaaaactgtcgaattttaaaatagggggatcaattccacacaaagatgaaaatagggggacca 7192180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 568 - 628
Target Start/End: Complemental strand, 41666313 - 41666253
Alignment:
Q  568 taatattttgtctaaaatatgttgatatatcatgtttttaatcaagtttttaagaaaattt 628  Q
    ||||||||| ||||||||||| ||| ||| |||||||| ||| ||||||| ||||||||||    
T  41666313 taatattttatctaaaatatgatgacataacatgttttaaatgaagttttcaagaaaattt 41666253  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 553 - 620
Target Start/End: Original strand, 43416300 - 43416367
Alignment:
Q  553 tttggtctttctatctaatattttgtctaaaatatgttgatatatcatgtttttaatcaagtttttaa 620  Q
    |||||||  ||||| ||||| ||||||||||||||| ||||||| |||||||| ||| || |||||||    
T  43416300 tttggtccctctatttaataatttgtctaaaatatggtgatataacatgttttaaatgaaatttttaa 43416367  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 570 - 646
Target Start/End: Complemental strand, 43670938 - 43670862
Alignment:
Q  570 atattttgtctaaaatatgttgata-tatcatgtttttaatcaagtttttaagaaaatttctttacgatttcatcgat 646  Q
    ||||||||||||||||||  ||||| ||| ||||||||||| |||||||||||  |||||  |||| |||||||||||    
T  43670938 atattttgtctaaaatattgtgatactat-atgtttttaatgaagtttttaagggaattttgttacaatttcatcgat 43670862  T

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Target: scaffold0122 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 553 - 646
Target Start/End: Complemental strand, 17786 - 17693
Alignment:
Q  553 tttggtctttctatctaatattttgtctaaaatatgttgatatatcatgtttttaatcaagtttttaagaaaatttctttacgatttcatcgat 646  Q
    ||||||| ||||||| |||||||||||||||||||  ||||||   ||||||| ||| ||||||| |||| | |||  |||| |||||||||||    
T  17786 tttggtcattctatcaaatattttgtctaaaatattgtgatatgatatgttttaaatgaagttttcaagatagttttattaccatttcatcgat 17693  T

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Target: scaffold0633 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 568 - 628
Target Start/End: Original strand, 8916 - 8976
Alignment:
Q  568 taatattttgtctaaaatatgttgatatatcatgtttttaatcaagtttttaagaaaattt 628  Q
    ||||||||| ||||||||||| ||| ||| |||||||| ||| ||||||| ||||||||||    
T  8916 taatattttatctaaaatatgatgacataacatgttttaaatgaagttttcaagaaaattt 8976  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 561 - 646
Target Start/End: Complemental strand, 40324496 - 40324411
Alignment:
Q  561 ttctatctaatattttgtctaaaatatgttgatatatcatgtttttaatcaagtttttaagaaaatttctttacgatttcatcgat 646  Q
    ||||||||||  |||||||||||||||| ||||||| || ||||| |||   ||||| |||| |||||  ||| ||||||||||||    
T  40324496 ttctatctaaatttttgtctaaaatatgatgatataacaagttttaaatggtgttttcaagagaattttcttatgatttcatcgat 40324411  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 642
Target Start/End: Original strand, 38216153 - 38216242
Alignment:
Q  553 tttggtctttctatctaatattttgtctaaaatatgttgatatatcatgtttttaatcaagtttttaagaaaatttctttacgatttcat 642  Q
    |||||||  |||||| |||||||||||||||||||  ||||||   ||||||| ||| ||||||| |||| |||||  |||| |||||||    
T  38216153 tttggtcgctctatcaaatattttgtctaaaatattgtgatatgatatgttttaaataaagttttcaagagaattttgttacaatttcat 38216242  T

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