View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16959_low_2 (Length: 587)
Name: NF16959_low_2
Description: NF16959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16959_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 574
Target Start/End: Complemental strand, 44826006 - 44825434
Alignment:
| Q |
1 |
aagatggaaggaaaagaagtatggatgcatgccgagtgactagtatgatagatttgcatcttttagaacaataaaagaagattcggtagataaattatcg |
100 |
Q |
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| T |
44826006 |
aagatggaaggaaaagaagtatggatgcataccgagtgactattatgatagatttgcatcctttagaacaataaaagaagcttcggtagataaattatgg |
44825907 |
T |
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| Q |
101 |
tgttgggaaatgaagattgttgttgagtcaggctcgagagaagagagtgtgtgcaaagagagacaaagttgacacatgggttggatataatgtagatgga |
200 |
Q |
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| T |
44825906 |
ttttggaaaatgaagattgctgttgagtcaggctcgagaaaagagagtgtgtgcaaagagagacaaagttgacacatgggttggatataatgtagatgga |
44825807 |
T |
|
| Q |
201 |
ccatgataaacttcagtggaatgctctaatctatcattgnnnnnnnncgggtccataatggatcaatttcttagaggtccaatttatggggaaccttctc |
300 |
Q |
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| T |
44825806 |
ccatgataagctttagtggaatgctctaatctatcattgaaaaaaaacgggtccatgatggatcaatttcttagaggtccaatttatacggaaccttctc |
44825707 |
T |
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| Q |
301 |
tcaattgtattcattggaagttcttctaaggcgatgtcatgggtgtttctttcactaggatttaacttcnnnnnnnnnnncctaaacgtgtctttttatt |
400 |
Q |
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| T |
44825706 |
tcaattgtattcattagaagttcttctaaggcgatgtcatgggtgtttctttcactaggatttaactt-ttttttttcttcctaaacgtgtctttttatt |
44825608 |
T |
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| Q |
401 |
ttattatagattnnnnnnntcttattaaaactggatagnnnnnnnttcaaatcctaatttagccgcaaaacatgtataattttcaaatacattcgttgtt |
500 |
Q |
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| T |
44825607 |
ttattatagattaaaaaaatcttattaaaattggatagaaaaaaattcaaatcctaatttagccgcaaaacatgtataattttcaaatacattcgttgtt |
44825508 |
T |
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| Q |
501 |
atacaatggtttttatattttacataccactgataaaggggatatagttttattgttcttcttataaatttttt |
574 |
Q |
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| T |
44825507 |
atacaatggtttttatattttacataccactgataaaggggatatagttttattgttcttcttataaatttttt |
44825434 |
T |
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