View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16959_low_3 (Length: 387)

Name: NF16959_low_3
Description: NF16959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16959_low_3
NF16959_low_3
[»] chr6 (14 HSPs)
chr6 (8-371)||(6505438-6505801)
chr6 (36-282)||(6526419-6526662)
chr6 (8-292)||(6515961-6516245)
chr6 (204-367)||(6465295-6465458)
chr6 (8-352)||(13035602-13035943)
chr6 (206-352)||(6473098-6473244)
chr6 (98-273)||(6520514-6520695)
chr6 (206-311)||(6528211-6528316)
chr6 (116-350)||(6496652-6496886)
chr6 (116-306)||(6461786-6461976)
chr6 (218-282)||(6523440-6523504)
chr6 (8-169)||(6472903-6473061)
chr6 (207-367)||(6457335-6457495)
chr6 (8-87)||(1841749-1841828)
[»] chr7 (3 HSPs)
chr7 (98-284)||(9665246-9665438)
chr7 (203-371)||(3753880-3754048)
chr7 (203-371)||(4046190-4046358)
[»] chr4 (1 HSPs)
chr4 (98-284)||(13536270-13536462)
[»] chr1 (3 HSPs)
chr1 (218-269)||(35231500-35231551)
chr1 (218-281)||(35243140-35243203)
chr1 (108-136)||(35231399-35231427)


Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 8 - 371
Target Start/End: Complemental strand, 6505801 - 6505438
Alignment:
Q  8 aagcaaaggtgtaaaagacgaatcacgcgatgaaattgtttcatcactttctaaagatgttgaagatttaaactcatctgcaacaaaacaaacaacatcg 107  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  6505801 aagcaaaggtgtaaaagacgaatcacgcaatgaaattgtttcatcactttctaaagatgttgaaggtttaaactcatctgcaacaaaacaaacaaaatcg 6505702  T
Q  108 tcttatttttatggaaaattgattgcaagagcagctaggcttgcattggtagcggaagaggttttcttctttgaagccattgaaaaggttagaagttttt 207  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||| || |||||||| || ||||  ||||    
T  6505701 tcttatttttatggaaaattaattgcaagagcagctaggcttgcattgatagctgaagaggttttcttctttgatgctattgaaaaagtaagaaactttt 6505602  T
Q  208 tgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggaggacttattactcaacaagggtctaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6505601 tgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggaggacttattactcaacaagggtctaa 6505502  T
Q  308 tgatggtggtggtgatttcggtttcggaatttacaatgatcatcactttcacttaggatatttt 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6505501 tgatggtggtggtgatttcggtttcggaatttacaatgatcatcactttcacttaggatatttt 6505438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 36 - 282
Target Start/End: Complemental strand, 6526662 - 6526419
Alignment:
Q  36 gatgaaattgtttcatcactttctaaagatgttgaagatttaaactcatctgcaacaaaacaaacaacatcgtcttatttttatggaaaattgattgcaa 135  Q
    ||||||||||||||| |||||| ||| ||||||||||   | || |||||   ||||| | |||||| ||| ||||||||||||||||||||||||||||    
T  6526662 gatgaaattgtttcagcactttgtaaggatgttgaaggactgaattcatc---aacaataaaaacaaaatcatcttatttttatggaaaattgattgcaa 6526566  T
Q  136 gagcagctaggcttgcattggtagcggaagaggttttcttctttgaagccattgaaaaggttagaagttttttgaaggaaaccattgagccttggcttga 235  Q
    |||| || || ||||||||| |||||||||||||||  ||| |||| |  |||  ||| |||||||  | ||||||||||||||||||||||||||||||    
T  6526565 gagctgcaagacttgcattgatagcggaagaggtttgtttccttgatgtgattccaaaagttagaaagtatttgaaggaaaccattgagccttggcttga 6526466  T
Q  236 tggaacttttaatggaaatggatttctatatgataaaaaatggggag 282  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  6526465 tggaacttttaatggaaatggatttctttatgataaaaaatggggag 6526419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 8 - 292
Target Start/End: Original strand, 6515961 - 6516245
Alignment:
Q  8 aagcaaaggtgtaaaagacgaatcacgcgatgaaattgtttcatcactttctaaagatgttgaagatttaaactcatctgcaacaaaacaaacaacatcg 107  Q
    |||||||||| ||||||| |||||||  |||||||||||||| || ||||  ||||||||||||| |||||| ||||| |||| || |  ||  || ||     
T  6515961 aagcaaaggtataaaagaagaatcacatgatgaaattgtttcgtcgcttttaaaagatgttgaaggtttaaattcatcagcaataacatcaattacttca 6516060  T
Q  108 tcttatttttatggaaaattgattgcaagagcagctaggcttgcattggtagcggaagaggttttcttctttgaagccattgaaaaggttagaagttttt 207  Q
    ||||| || |||||| ||||||||||||||||||| ||| | |||||| |||| |||||  |||| ||| |||| || ||| |||| || ||||| ||||    
T  6516061 tcttacttctatggacaattgattgcaagagcagcaaggttagcattgatagctgaagaattttttttcgttgacgctattcaaaaagtcagaagctttt 6516160  T
Q  208 tgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggaggacttattac 292  Q
    |||||||||| ||||| || |||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| |||||||    
T  6516161 tgaaggaaacaattgaaccatggcttgatggaacttttaacggaaatggatttctgtatgacaaaaaatggggaggaattattac 6516245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 204 - 367
Target Start/End: Complemental strand, 6465458 - 6465295
Alignment:
Q  204 tttttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggaggacttattactcaacaagggt 303  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||| || ||||  |||||||||    
T  6465458 tttttgaaggaaactattgagccttggcttgatggaacttttaatggaaatggatttctctatgatggaaaatggggaggaattgttaccaaacaagggt 6465359  T
Q  304 ctaatgatggtggtggtgatttcggtttcggaatttacaatgatcatcactttcacttaggata 367  Q
    ||||||||  ||||| |||||| || |||||| |||| ||||||||||| | ||| ||||||||    
T  6465358 ctaatgatactggtgctgattttggattcggagtttataatgatcatcattatcatttaggata 6465295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 352
Target Start/End: Original strand, 13035602 - 13035943
Alignment:
Q  8 aagcaaaggtgtaaaagacgaatcacgcgatgaaattgtttcatcactttctaaagatgttgaagatttaaactcatctgcaacaaaacaaacaacatcg 107  Q
    |||||||||||||||||| |||||||  ||  ||||||||||| | ||||| ||||||||||||| | |||| |||||  | | || |   || |||||     
T  13035602 aagcaaaggtgtaaaagaagaatcacatgacaaaattgtttcagctctttcgaaagatgttgaaggtctaaagtcatcaccgataaca---acgacatca 13035698  T
Q  108 tcttatttttatggaaaattgattgcaagagcagctaggcttgcattggtagcggaagaggttttcttctttgaagccattgaaaaggtta-gaagtttt 206  Q
    ||||| ||||||||||||||||| |||||||| || ||| | |||||| || | ||||||||    | | |||| || |||  ||  || | |||||  |    
T  13035699 tcttacttttatggaaaattgatagcaagagctgcaaggttagcattgataactgaagaggtgaattaccttgatgcaattccaattgtgaagaagtact 13035798  T
Q  207 ttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggaggacttattactcaacaagggtcta 306  Q
    | ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||| ||  ||||||| ||||    
T  13035799 t-gaaggaatccattgagccttggcttgatggaacttttaatggaaatggatttctctatgataaaaaatggggaggtattataacgaaacaaggttcta 13035897  T
Q  307 atgatggtggtggtgatttcggtttcggaatttacaatgatcatca 352  Q
     ||||   |||| ||||||||| || |||||||| ||||| |||||    
T  13035898 ctgataccggtgctgatttcgggtttggaatttataatgaccatca 13035943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 206 - 352
Target Start/End: Original strand, 6473098 - 6473244
Alignment:
Q  206 tttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggaggacttattactcaacaagggtct 305  Q
    |||||||||| |||  ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||  |||| ||  ||||||| |||    
T  6473098 tttgaaggaatccaccgagccttggctcgatggaacatttaatggaaatggatttctctatgataaaaaatggggaggtattataaccaaacaaggttct 6473197  T
Q  306 aatgatggtggtggtgatttcggtttcggaatttacaatgatcatca 352  Q
    | ||||   |||| ||||||||| ||||||||||| |||||||||||    
T  6473198 actgataccggtgctgatttcgggttcggaatttataatgatcatca 6473244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 98 - 273
Target Start/End: Original strand, 6520514 - 6520695
Alignment:
Q  98 aacaacatcgtcttatttttatggaaaattgattgcaagagcagctaggcttgcattggtagcggaagaggttttcttctttgaagccattgaaaaggtt 197  Q
    ||||||||||||||||| ||||||||| |||||||| ||||| || ||| | ||| |  |||| |||||||||||| |||||||    |||  |||||||    
T  6520514 aacaacatcgtcttattcttatggaaagttgattgctagagctgcaaggttagcaataatagctgaagaggttttcgtctttgatttgattccaaaggtt 6520613  T
Q  198 agaagt------tttttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaa 273  Q
    |  | |      || ||||||||||| |||||||||||||||||||||||||||| || |||||| ||||||||||||||||    
T  6520614 aagattaagatgttcttgaaggaaactattgagccttggcttgatggaacttttagtgaaaatggttttctatatgataaaa 6520695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 206 - 311
Target Start/End: Complemental strand, 6528316 - 6528211
Alignment:
Q  206 tttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggaggacttattactcaacaagggtct 305  Q
    ||||||||| |  |||||||||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||  |||||||  ||||||| |||    
T  6528316 tttgaaggagatgattgagccttggcttgatggaactttcaaaggtaatggatttctctatgataaaaaatggggagggattattacaaaacaaggctct 6528217  T
Q  306 aatgat 311  Q
    | ||||    
T  6528216 actgat 6528211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 350
Target Start/End: Complemental strand, 6496886 - 6496652
Alignment:
Q  116 ttatggaaaattgattgcaagagcagctaggcttgcattggtagcggaagaggttttcttctttgaagccattgaaaaggtta-gaagttttttgaagga 214  Q
    |||||| |||||||||| ||| || || ||| |||||||| |||| ||||||||||  | ||| || |  |||  |||||||| ||||||||| ||| ||    
T  6496886 ttatggtaaattgattggaagggcggcgaggtttgcattgatagccgaagaggtttcatacttagatgtgattccaaaggttaagaagttttt-gaaaga 6496788  T
Q  215 aaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggaggacttattactcaacaagggtctaatgatggt 314  Q
    |||||||||||||||| | ||||||||||| ||||| |||||||||||| | ||| | |||||||| ||  || ||||   ||||||||||  ||||  |    
T  6496787 aaccattgagccttggttagatggaactttaaatgggaatggatttctacaagatgataaatggggtggcattgttaccatacaagggtctgttgattct 6496688  T
Q  315 ggtggtgatttcggtttcggaatttacaatgatcat 350  Q
      || ||||| |||||||||||| || |||||||||    
T  6496687 aatgctgattccggtttcggaatctataatgatcat 6496652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 116 - 306
Target Start/End: Original strand, 6461786 - 6461976
Alignment:
Q  116 ttatggaaaattgattgcaagagcagctaggcttgcattggtagcggaagaggttttcttctttgaagccattgaaaaggtta-gaagttttttgaagga 214  Q
    |||||| |||||||||| ||| || || ||| |||||||| |||| ||||||||||  | ||| || |  |||  |||||||| |||||||||  ||| |    
T  6461786 ttatggtaaattgattggaagggcggcgaggtttgcattgatagctgaagaggtttcttacttagatgtgattccaaaggttaagaagtttttaaaag-a 6461884  T
Q  215 aaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggaggacttattactcaacaagggtcta 306  Q
    |||||||||||||||| | ||||||||||| ||||| |||||||||||| | ||| | |||||||| ||  || ||||  ||||||||||||    
T  6461885 aaccattgagccttggttagatggaactttaaatgggaatggatttctacaagatgataaatggggtggcattgttaccgaacaagggtcta 6461976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 282
Target Start/End: Complemental strand, 6523504 - 6523440
Alignment:
Q  218 cattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggag 282  Q
    ||||||||||||||||||||||||||| ||   ||||||||||||||||||| | ||||||||||    
T  6523504 cattgagccttggcttgatggaactttcaaataaaatggatttctatatgatcagaaatggggag 6523440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 6472903 - 6473061
Alignment:
Q  8 aagcaaaggtgtaaaagacgaatcacgcgatgaaattgtttcatcactttctaaagatgttgaagatttaaactcatctgcaacaaaacaaacaacatcg 107  Q
    |||||||||||||||||| |||||||  || |||||||||||| | ||||| |||||||||||   | |||| ||||   || | | |  |||| ||||     
T  6472903 aagcaaaggtgtaaaagaagaatcacatgacgaaattgtttcagctctttcaaaagatgttgagagtctaaagtcat---caccgataacaacagcatca 6472999  T
Q  108 tcttatttttatggaaaattgattgcaagagcagctaggcttgcattggtagcggaagaggt 169  Q
    ||||| ||||||||||||||||| ||||| || || ||| | |||||| |||| ||||||||    
T  6473000 tcttacttttatggaaaattgatagcaagggctgcgaggttagcattgatagccgaagaggt 6473061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 367
Target Start/End: Complemental strand, 6457495 - 6457335
Alignment:
Q  207 ttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggaggacttattactcaacaagggtcta 306  Q
    ||||||||||| || ||||| ||| |  ||||||||||||| | |||||| ||||| ||||||  ||||||||||||| | |||||  ||||||| |||     
T  6457495 ttgaaggaaacgatcgagccatggttgaatggaacttttaacgaaaatggttttctttatgatggaaaatggggaggaatcattaccaaacaaggctctc 6457396  T
Q  307 atgatggtggtggtgatttcggtttcggaatttacaatgatcatcactttcacttaggata 367  Q
    | |||   || |  ||||| || ||||| ||||| ||||||||||| | ||| ||||||||    
T  6457395 aagattcaggggcagattttgggttcggtatttataatgatcatcattatcatttaggata 6457335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 1841749 - 1841828
Alignment:
Q  8 aagcaaaggtgtaaaagacgaatcacgcgatgaaattgtttcatcactttctaaagatgttgaagatttaaactcatctg 87  Q
    |||||||||||||||||| ||||  |  ||||||||||||||| | ||||  ||| ||||||||| ||| ||||||||||    
T  1841749 aagcaaaggtgtaaaagaagaatttcatgatgaaattgtttcagctcttttgaaatatgttgaaggtttgaactcatctg 1841828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 98 - 284
Target Start/End: Original strand, 9665246 - 9665438
Alignment:
Q  98 aacaacatcgtcttatttttatggaaaattgattgcaagagcagctaggcttgcattggtagcggaagaggttttcttctttgaagccattgaaaaggtt 197  Q
    ||||||||| || || |||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| ||||||||     ||  ||| |||    
T  9665246 aacaacatcttcatacttttatggaaaattgattgcaagagcagctaggcttgcattgatagctgaagacgtttttttctttgatatggttccaaatgtt 9665345  T
Q  198 a-------gaagttttttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggagga 284  Q
    |       ||||||||| ||| ||||| ||||| || ||| ||||||||||||| || | |||||||||||| |||||| | ||||||||||||    
T  9665346 aagattaagaagttttt-gaaagaaactattgaaccgtggtttgatggaactttcaaagaaaatggatttctgtatgatcagaaatggggagga 9665438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 203 - 371
Target Start/End: Original strand, 3753880 - 3754048
Alignment:
Q  203 ttttttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggaggacttattactcaacaaggg 302  Q
    ||||||||||||||| |||||||| ||| |  |||||||||| || || ||||| ||  | ||||| ||||||||||| ||| |  ||||| ||||||||    
T  3753880 ttttttgaaggaaactattgagccatggttgaatggaactttcaaagggaatggtttcttgtatgaaaaaaaatggggtggattagttactaaacaaggg 3753979  T
Q  303 tctaatgatggtggtggtgatttcggtttcggaatttacaatgatcatcactttcacttaggatatttt 371  Q
      |||| ||   | || |||||| ||||| |||||||| ||||||||||| | ||| ||||| ||||||    
T  3753980 gttaataattcagttgttgattttggttttggaatttataatgatcatcattatcatttaggttatttt 3754048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 203 - 371
Target Start/End: Complemental strand, 4046358 - 4046190
Alignment:
Q  203 ttttttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggaggacttattactcaacaaggg 302  Q
    ||||||||||||||| |||||||| ||| | ||||||| ||| || || ||||| ||| | ||||| ||||  ||||| ||| |  ||||||||||||||    
T  4046358 ttttttgaaggaaactattgagccatggttggatggaaatttcaaagggaatggttttttctatgaaaaaagttggggtggattagttactcaacaaggg 4046259  T
Q  303 tctaatgatggtggtggtgatttcggtttcggaatttacaatgatcatcactttcacttaggatatttt 371  Q
      |||||||    ||| |||||| ||||| ||||| || ||||||||||| | ||| ||||| ||||||    
T  4046258 attaatgattcaagtgctgattttggttttggaatgtataatgatcatcattatcatttaggttatttt 4046190  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 98 - 284
Target Start/End: Original strand, 13536270 - 13536462
Alignment:
Q  98 aacaacatcgtcttatttttatggaaaattgattgcaagagcagctaggcttgcattggtagcggaagaggttttcttctttgaagccattgaaaaggtt 197  Q
    ||||||||| || || |||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| ||||||||     ||  ||| |||    
T  13536270 aacaacatcttcatacttttatggaaaattgattgcaagagcagctaggcttgcattgatagctgaagacgtttttttctttgatatggttccaaatgtt 13536369  T
Q  198 a-------gaagttttttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggagga 284  Q
    |       ||||||||| ||| ||||| ||||| || ||| ||||||||||||| || | |||||||||||| |||||| | ||||||||||||    
T  13536370 aagattaagaagttttt-gaaagaaactattgaaccgtggtttgatggaactttcaaagaaaatggatttctgtatgatcagaaatggggagga 13536462  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 35231500 - 35231551
Alignment:
Q  218 cattgagccttggcttgatggaacttttaatggaaatggatttctatatgat 269  Q
    |||||||||||||||||||||| || | || | |||||||||||||||||||    
T  35231500 cattgagccttggcttgatggagctatcaaagaaaatggatttctatatgat 35231551  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 281
Target Start/End: Original strand, 35243140 - 35243203
Alignment:
Q  218 cattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatgggga 281  Q
    |||||||| |||||||||||||||||| || | ||||| |||| |||||||| || ||||||||    
T  35243140 cattgagctttggcttgatggaactttcaaagaaaatgaatttgtatatgatcaagaatgggga 35243203  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 136
Target Start/End: Original strand, 35231399 - 35231427
Alignment:
Q  108 tcttatttttatggaaaattgattgcaag 136  Q
    |||||||||||||||||||||||||||||    
T  35231399 tcttatttttatggaaaattgattgcaag 35231427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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