View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1696-Insertion-1 (Length: 354)
Name: NF1696-Insertion-1
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696-Insertion-1 |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 7 - 354
Target Start/End: Original strand, 18061693 - 18062040
Alignment:
| Q |
7 |
agcttcaacaaaaggtggagcagtccacacctcaggccgcaaggctcatattgatgtggcgcttgagctcgtaagtgaaaatgacactttgaatttgaag |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18061693 |
agcttcaacaaaaggtggagcagtccacacctcaggccgcaaagctcatattgatgtggcgcttgagctcgtaagtgaaaatgacactttgaatttgaag |
18061792 |
T |
|
| Q |
107 |
acttgtatctaagttgtctattgatgttaataaaacctattggcactcatattaatgaaaactgactcctgaattgtttatactaactgtttgtatactg |
206 |
Q |
| |
|
|||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |
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| T |
18061793 |
acttttatccgagttgtctattgatgttagtaaaacctattggcactcatattaatgaaaactgactcctgaattgtttatactaattgtttctgtactg |
18061892 |
T |
|
| Q |
207 |
ataatttcaatcttttatgatttgtagtgcaataatcttgaaagggatttggaccctgatgaattatttctatatactcacaagaggaagactggtgaat |
306 |
Q |
| |
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|| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
18061893 |
attatttcaatcttttatgatttgtagtccaataatcttcaaagggatttggaccctgatgaattatttctatatactcacaagaggaagaccggtgaat |
18061992 |
T |
|
| Q |
307 |
ggactgataagagatcacagtcgacctatgtaagttattgactgtata |
354 |
Q |
| |
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|| ||||| |||||| || ||||||||||||||||||||||||||| |
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|
| T |
18061993 |
gggttgatagtagatcaaaggcgacctatgtaagttattgactgtata |
18062040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 7 - 354
Target Start/End: Complemental strand, 10246885 - 10246538
Alignment:
| Q |
7 |
agcttcaacaaaaggtggagcagtccacacctcaggccgcaaggctcatattgatgtggcgcttgagctcgtaagtgaaaatgacactttgaatttgaag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10246885 |
agcttcaacaaaaggtggagcagtccacacctcaggccgcaaagctcatattgatgtggcgcttgagctcgtaagtgaaaatgacactttgaatttgaag |
10246786 |
T |
|
| Q |
107 |
acttgtatctaagttgtctattgatgttaataaaacctattggcactcatattaatgaaaactgactcctgaattgtttatactaactgtttgtatactg |
206 |
Q |
| |
|
|||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |
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| T |
10246785 |
acttttatccgagttgtctattgatgttagtaaaacctattggcactcatattaatgaaaactgactcctgaattgtttatactaattgtttctgtactg |
10246686 |
T |
|
| Q |
207 |
ataatttcaatcttttatgatttgtagtgcaataatcttgaaagggatttggaccctgatgaattatttctatatactcacaagaggaagactggtgaat |
306 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
10246685 |
attatttcaatcttttatgatttgtagtccaataatcttcaaagggatttggaccctgatgaattatttctatatactcacaagaggaagaccggtgaat |
10246586 |
T |
|
| Q |
307 |
ggactgataagagatcacagtcgacctatgtaagttattgactgtata |
354 |
Q |
| |
|
|| ||||| |||||| || ||||||||||||||||||||||||||| |
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|
| T |
10246585 |
gggttgatagtagatcaaaggcgacctatgtaagttattgactgtata |
10246538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 7 - 354
Target Start/End: Complemental strand, 10990911 - 10990564
Alignment:
| Q |
7 |
agcttcaacaaaaggtggagcagtccacacctcaggccgcaaggctcatattgatgtggcgcttgagctcgtaagtgaaaatgacactttgaatttgaag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10990911 |
agcttcaacaaaaggtggagcagtccacacctcaggccgcaaagctcatattgatgtggcgcttgagctcgtaagtgaaaatgacactttgaatttgaag |
10990812 |
T |
|
| Q |
107 |
acttgtatctaagttgtctattgatgttaataaaacctattggcactcatattaatgaaaactgactcctgaattgtttatactaactgtttgtatactg |
206 |
Q |
| |
|
|||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |
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|
| T |
10990811 |
acttttatccgagttgtctattgatgttagtaaaacctattggcactcatattaatgaaaactgactcctgaattgtttatactaattgtttctgtactg |
10990712 |
T |
|
| Q |
207 |
ataatttcaatcttttatgatttgtagtgcaataatcttgaaagggatttggaccctgatgaattatttctatatactcacaagaggaagactggtgaat |
306 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10990711 |
attatttcaatcttttatgatttgtagtccaataatcttcaaagggatttggaccctgatgaattatttctatatactcacaagaggaagaccggtgaat |
10990612 |
T |
|
| Q |
307 |
ggactgataagagatcacagtcgacctatgtaagttattgactgtata |
354 |
Q |
| |
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|| ||||| |||||| || ||||||||||||||||||||||||||| |
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| T |
10990611 |
gggttgatagtagatcaaaggcgacctatgtaagttattgactgtata |
10990564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 35 - 303
Target Start/End: Complemental strand, 26136460 - 26136191
Alignment:
| Q |
35 |
acctcaggccgcaaggctcatattgatgtggcgcttgagctcgtaagtgaaaatgaca--ctttgaatttgaagacttgtatctaagttgtctattgatg |
132 |
Q |
| |
|
|||| ||||| |||| || |||||||||||| ||||||||||||||||||||||||| | | ||||||| |||||||| |||||||||||||||| |
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| T |
26136460 |
accttaggccacaagacttatattgatgtggtacttgagctcgtaagtgaaaatgacatgcactatatttgaactcttgtatcgaagttgtctattgatg |
26136361 |
T |
|
| Q |
133 |
ttaataaaacctattggcactcatattaatgaaaactgactcctgaattgtttatactaactgtttgtatactgataatttcaatcttttatgatttgta |
232 |
Q |
| |
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|||||||||| |||| |||| ||||||| |||||| ||||| ||||| |||||||||| | ||| |||| |||| ||||||||||||||| || |||| |
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|
| T |
26136360 |
ttaataaaacgcattg-cacttatattaacgaaaaccgactcttgaatcttttatactaattatttctatattgattatttcaatcttttattatctgta |
26136262 |
T |
|
| Q |
233 |
gtgcaataatcttgaaagggatttggaccctgatgaattatttctatatactcacaagaggaagactggtg |
303 |
Q |
| |
|
|| |||||||||| ||||| |||| || ||||||||||| | || | || |||||||||||||||||| |
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|
| T |
26136261 |
gtccaataatcttcaaaggtatttacgccatgatgaattatatttacaaacctacaagaggaagactggtg |
26136191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 29852978 - 29852929
Alignment:
| Q |
17 |
aaaggtggagcagtccacacctcaggccgcaaggctcatattgatgtggc |
66 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
29852978 |
aaaggtggagcagtccacaccacaggccgcaaggctcatgttgatgtggc |
29852929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 7 - 354
Target Start/End: Complemental strand, 17922266 - 17921919
Alignment:
| Q |
7 |
agcttcaacaaaaggtggagcagtccacacctcaggccgcaaggctcatattgatgtggcgcttgagctcgtaagtgaaaatgacactttgaatttgaag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17922266 |
agcttcaacaaaaggtggagcagtccacacctcaggccgcaaagctcatattgatgtggcgcttgagctcgtaagtgaaaatgacactttgaatttgaag |
17922167 |
T |
|
| Q |
107 |
acttgtatctaagttgtctattgatgttaataaaacctattggcactcatattaatgaaaactgactcctgaattgtttatactaactgtttgtatactg |
206 |
Q |
| |
|
|||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |
|
|
| T |
17922166 |
acttttatccgagttgtctattgatgttagtaaaacctattggcactcatattaatgaaaactgactcctgaattgtttatactaattgtttctgtactg |
17922067 |
T |
|
| Q |
207 |
ataatttcaatcttttatgatttgtagtgcaataatcttgaaagggatttggaccctgatgaattatttctatatactcacaagaggaagactggtgaat |
306 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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|
| T |
17922066 |
attatttcaatcttttatgatttgtagtccaataatcttcaaagggatttggaccctgatgaattatttatatatactcacaagaggaagaccggtgaat |
17921967 |
T |
|
| Q |
307 |
ggactgataagagatcacagtcgacctatgtaagttattgactgtata |
354 |
Q |
| |
|
|| ||||| |||||| || ||||||||||||||||||||||||||| |
|
|
| T |
17921966 |
gggttgatagtagatcaaaggcgacctatgtaagttattgactgtata |
17921919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 7 - 308
Target Start/End: Complemental strand, 16693417 - 16693116
Alignment:
| Q |
7 |
agcttcaacaaaaggtggagcagtccacacctcaggccgcaaggctcatattgatgtggcgcttgagctcgtaagtgaaaatgacactttgaatttgaag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
16693417 |
agcttcaacaaaaggtggagcagtccacacctcaggccgcaaagctcatattgatgtggcgcttgagctcgtaagtgaaaacgacactttgaatttaaag |
16693318 |
T |
|
| Q |
107 |
acttgtatctaagttgtctattgatgttaataaaacctattggcactcatattaatgaaaactgactcctgaattgtttatactaactgtttgtatactg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||| | |||| |
|
|
| T |
16693317 |
acttgtatctaagttgtctattgatgttaataaaacctattggcactcatattaatgaaaaatgactcttgaattgtttatactaattgtttatgtacta |
16693218 |
T |
|
| Q |
207 |
ataatttcaatcttttatgatttgtagtgcaataatcttgaaagggatttggaccctgatgaattatttctatatactcacaagaggaagactggtgaat |
306 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16693217 |
attatttcaatcttttatgatttgtagtccaataatcttcaaagggatttggaccctgatgaattatttctatatactcacaagaggaagaccggtgaat |
16693118 |
T |
|
| Q |
307 |
gg |
308 |
Q |
| |
|
|| |
|
|
| T |
16693117 |
gg |
16693116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 354
Target Start/End: Original strand, 21419660 - 21420005
Alignment:
| Q |
7 |
agcttcaacaaaaggtggagcagtccacacctcaggccgcaaggctcatattgatgtggcgcttgagctcgtaagtgaaaatgacactttgaatttgaag |
106 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21419660 |
agcttcaacagaaggtggtgcagtccacacctcaggccgcaatgctcatattgatgtggcgcttgagctcgtaagtgaaaatgacactttgaatttgaat |
21419759 |
T |
|
| Q |
107 |
acttgtatctaagttgtctattgatgttaataaaacctattggcactcatattaatgaaaactgactcctgaattgtttatactaactgtttgtatactg |
206 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| ||| |||||||| |||| | ||| ||||||| |
|
|
| T |
21419760 |
tcttgtatgtaagttgtctatttatgttaataaaacctattg-cactcatattaatgaaa-ctgactcatgagttgtttatgctaattatttctatactg |
21419857 |
T |
|
| Q |
207 |
ataatttcaatcttttatgatttgtagtgcaataatcttgaaagggatttggaccctgatgaattatttctatatactcacaagaggaagactggtgaat |
306 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21419858 |
attatttcaatcttttatgatttgtagtccaataatcttcaaagggatttggaccctgatgaattatttctatatactcacaagaggaagaccggtgaat |
21419957 |
T |
|
| Q |
307 |
ggactgataagagatcacagtcgacctatgtaagttattgactgtata |
354 |
Q |
| |
|
|| ||||| |||||| || ||||||||||||||||||||||||||| |
|
|
| T |
21419958 |
gggttgatagtagatcaaaggcgacctatgtaagttattgactgtata |
21420005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 350
Target Start/End: Complemental strand, 16692715 - 16692683
Alignment:
| Q |
318 |
agatcacagtcgacctatgtaagttattgactg |
350 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
16692715 |
agatcaaagtcgacctatgtaagttattgactg |
16692683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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