View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1696-Insertion-10 (Length: 349)
Name: NF1696-Insertion-10
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696-Insertion-10 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 27 - 343
Target Start/End: Complemental strand, 55506726 - 55506419
Alignment:
| Q |
27 |
gaaattaaaaatctaaccttctttcaacggcagagtgtgcaaagacaaaatcaagacattacaactacgtttagtaccccttagccgccattctagagat |
126 |
Q |
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| T |
55506726 |
gaaattaaaaatctaaccttctttcaacagcagagtgtgcaaagacaaaatcaagacattacaactacgtt-agtaccccttagccgccattctagagat |
55506628 |
T |
|
| Q |
127 |
attatgaaaataaagcgaatgatagaaagacggcgatagaccaaaacgaacgaagcgaactcaacatttgcatcaataagaccttgtcaggaaaatccag |
226 |
Q |
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| T |
55506627 |
attatgaaaataaagagaaagatagaaagac--------acttgtgcgaacgaagcgaactcaacatttgcatcaataagaccttgtcaggaaaatccag |
55506536 |
T |
|
| Q |
227 |
ggggataaaccatggcaagggaacaagagtacaaagcaaacaacatcaacaaagtctaaatttaggaattgttgttcgnnnnnnnccaggagagtagaat |
326 |
Q |
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| T |
55506535 |
ggggataaaccatggcaagggaacaagagtacaaagcaaacaacatcaacaaagtctaaatttaggaattgttgttcgtttttttccaggagagtagaat |
55506436 |
T |
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| Q |
327 |
ctatccaacaaagttgg |
343 |
Q |
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|||||||| |||||||| |
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| T |
55506435 |
ctatccaagaaagttgg |
55506419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 43996561 - 43996514
Alignment:
| Q |
175 |
aacgaagcgaactcaacatttgcatcaataagaccttgtcaggaaaat |
222 |
Q |
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| T |
43996561 |
aacgaagagaactcaacattcacatcaataagaccttgtgaggaaaat |
43996514 |
T |
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