View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1696-Insertion-11 (Length: 376)

Name: NF1696-Insertion-11
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1696-Insertion-11
NF1696-Insertion-11
[»] chr4 (1 HSPs)
chr4 (9-376)||(47902304-47902672)


Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 9 - 376
Target Start/End: Complemental strand, 47902672 - 47902304
Alignment:
Q  9 tcattaggtcgctggtatggattatatcacctttttgccttaatcgacattattgcatacttatatgctccaattatgaacttacagccacacacggtcc 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  47902672 tcattaggtcgctggtatggattatatcacctttttgccttaatcgacattattgcatacttatatgctccaattatgaatttacagccacacgcggtcc 47902573  T
Q  109 ctttgccaaccaaaattattcacactagagaataccaatcacccaactcaaccacaattgcacgtgttatacatagcaccttgttactcattaaaaaatt 208  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47902572 ctttgccaaccaaaattattcacactagagaataccagtcactcaactcaaccacaattgcacgtgttatacatagcaccttgttactcattaaaaaatt 47902473  T
Q  209 tataagnnnnnnncataactcaattggcagagaggttgcattttatatgttggggttagagtttgaacaaattctctactaattcatctgaatggtgaat 308  Q
    ||||||       |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47902472 tataagttttgttcataactcaattgatagagaggttgcattttatatgttggggttagagtttgaacaaattctctacttattcatctgaatggtgaat 47902373  T
Q  309 ttacggtttatttga-caaaaaggtaaaaaattatgaactaatttgcatcgtatagtccttctacttta 376  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47902372 ttacggtttatttgataaaaaaggtaaaaaattatgaactaatttgcatcctatagtccttctacttta 47902304  T

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