View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1696-Insertion-12 (Length: 569)

Name: NF1696-Insertion-12
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1696-Insertion-12
NF1696-Insertion-12
[»] chr6 (18 HSPs)
chr6 (28-461)||(4508386-4508821)
chr6 (308-462)||(17264332-17264486)
chr6 (247-462)||(3717366-3717586)
chr6 (247-462)||(23406656-23406872)
chr6 (334-454)||(7412776-7412896)
chr6 (362-462)||(32035089-32035189)
chr6 (335-462)||(14587643-14587770)
chr6 (312-462)||(5699484-5699634)
chr6 (268-462)||(2813307-2813506)
chr6 (312-461)||(33413431-33413579)
chr6 (305-444)||(1945630-1945770)
chr6 (368-460)||(9905100-9905192)
chr6 (357-462)||(24604445-24604550)
chr6 (337-462)||(21517564-21517679)
chr6 (403-443)||(5638879-5638919)
chr6 (110-148)||(32086280-32086318)
chr6 (247-290)||(16396388-16396431)
chr6 (247-291)||(440125-440169)
[»] chr7 (21 HSPs)
chr7 (253-462)||(28230551-28230760)
chr7 (322-462)||(43737060-43737200)
chr7 (242-462)||(36468620-36468840)
chr7 (283-462)||(36629100-36629281)
chr7 (268-462)||(24042271-24042470)
chr7 (285-462)||(47202392-47202570)
chr7 (312-462)||(3936034-3936184)
chr7 (313-462)||(19225681-19225831)
chr7 (334-462)||(37518378-37518506)
chr7 (305-462)||(36408291-36408447)
chr7 (367-462)||(8154880-8154975)
chr7 (312-462)||(42925724-42925874)
chr7 (327-462)||(31642982-31643117)
chr7 (312-462)||(3304841-3304992)
chr7 (312-441)||(42877149-42877278)
chr7 (284-462)||(6467593-6467773)
chr7 (369-454)||(33574125-33574210)
chr7 (312-464)||(33151133-33151285)
chr7 (350-422)||(9151778-9151850)
chr7 (357-412)||(28346118-28346173)
chr7 (402-462)||(31985601-31985661)
[»] scaffold0508 (1 HSPs)
scaffold0508 (239-462)||(3478-3704)
[»] chr8 (20 HSPs)
chr8 (250-462)||(44106093-44106299)
chr8 (334-462)||(27928024-27928152)
chr8 (312-462)||(8885536-8885686)
chr8 (247-462)||(16310456-16310675)
chr8 (247-462)||(37248415-37248634)
chr8 (314-462)||(3094609-3094757)
chr8 (327-462)||(31519975-31520110)
chr8 (334-462)||(28916731-28916859)
chr8 (334-462)||(42280974-42281105)
chr8 (285-462)||(21004288-21004465)
chr8 (318-462)||(34853262-34853404)
chr8 (312-462)||(9073430-9073580)
chr8 (247-451)||(36404249-36404453)
chr8 (293-459)||(41530575-41530743)
chr8 (368-458)||(35676625-35676715)
chr8 (399-462)||(40994805-40994868)
chr8 (313-462)||(7971080-7971229)
chr8 (380-449)||(11698382-11698451)
chr8 (244-294)||(37099664-37099714)
chr8 (247-296)||(9138081-9138130)
[»] chr5 (35 HSPs)
chr5 (245-461)||(38871491-38871708)
chr5 (242-462)||(20891429-20891651)
chr5 (241-462)||(24203767-24203986)
chr5 (247-462)||(25746845-25747063)
chr5 (242-462)||(15957567-15957787)
chr5 (247-462)||(4064803-4065024)
chr5 (311-462)||(28083461-28083612)
chr5 (312-462)||(6156619-6156769)
chr5 (313-461)||(40620074-40620222)
chr5 (312-462)||(15799113-15799263)
chr5 (247-462)||(33487425-33487648)
chr5 (334-462)||(37183865-37183993)
chr5 (334-462)||(39524686-39524814)
chr5 (336-459)||(38372221-38372344)
chr5 (312-462)||(26319006-26319155)
chr5 (327-462)||(26190381-26190516)
chr5 (312-454)||(38692873-38693016)
chr5 (285-462)||(36359669-36359847)
chr5 (362-454)||(12465200-12465289)
chr5 (312-422)||(31929229-31929338)
chr5 (242-446)||(38640536-38640744)
chr5 (378-462)||(14111851-14111935)
chr5 (395-462)||(29862583-29862650)
chr5 (370-462)||(8032217-8032309)
chr5 (395-462)||(31221422-31221489)
chr5 (288-453)||(37095007-37095171)
chr5 (378-462)||(34440688-34440771)
chr5 (368-462)||(32842055-32842149)
chr5 (334-442)||(27212618-27212726)
chr5 (368-464)||(26095035-26095131)
chr5 (313-391)||(28108271-28108348)
chr5 (247-292)||(29359529-29359574)
chr5 (372-425)||(34529976-34530029)
chr5 (247-292)||(35336201-35336246)
chr5 (434-462)||(31929207-31929235)
[»] chr2 (23 HSPs)
chr2 (247-462)||(15995191-15995410)
chr2 (312-462)||(45153869-45154019)
chr2 (242-454)||(25217876-25218095)
chr2 (334-462)||(17474877-17475005)
chr2 (312-462)||(44465805-44465956)
chr2 (313-462)||(36949023-36949172)
chr2 (312-462)||(32187947-32188098)
chr2 (334-462)||(33452521-33452649)
chr2 (334-462)||(39447110-39447238)
chr2 (328-462)||(41510506-41510641)
chr2 (362-462)||(4268316-4268416)
chr2 (378-462)||(36874977-36875061)
chr2 (378-462)||(41854977-41855061)
chr2 (394-462)||(42894385-42894453)
chr2 (244-446)||(25715219-25715425)
chr2 (334-462)||(34517049-34517176)
chr2 (238-462)||(5507264-5507494)
chr2 (378-462)||(33366920-33367003)
chr2 (285-446)||(9847519-9847681)
chr2 (368-462)||(41203265-41203358)
chr2 (312-375)||(41855054-41855117)
chr2 (247-292)||(38209408-38209453)
chr2 (395-459)||(38308875-38308939)
[»] chr4 (31 HSPs)
chr4 (312-462)||(54631546-54631696)
chr4 (247-462)||(2506114-2506333)
chr4 (247-462)||(48319148-48319365)
chr4 (285-462)||(23523812-23523990)
chr4 (334-462)||(7931614-7931742)
chr4 (312-462)||(19835454-19835604)
chr4 (247-462)||(55052702-55052923)
chr4 (334-462)||(17933220-17933348)
chr4 (334-462)||(25491478-25491606)
chr4 (247-462)||(38536036-38536254)
chr4 (247-463)||(25539030-25539251)
chr4 (312-454)||(32441745-32441887)
chr4 (313-462)||(46440357-46440507)
chr4 (242-462)||(25752527-25752751)
chr4 (334-462)||(40703619-40703748)
chr4 (336-462)||(29822577-29822703)
chr4 (312-437)||(6228919-6229044)
chr4 (334-462)||(3703333-3703461)
chr4 (378-462)||(34972864-34972948)
chr4 (334-428)||(53894108-53894202)
chr4 (306-462)||(6003754-6003912)
chr4 (394-464)||(41413181-41413250)
chr4 (373-462)||(8106387-8106476)
chr4 (334-463)||(38416521-38416650)
chr4 (312-461)||(49396942-49397091)
chr4 (408-462)||(31582505-31582559)
chr4 (244-373)||(42660430-42660562)
chr4 (357-425)||(50392529-50392597)
chr4 (247-293)||(4049211-4049257)
chr4 (244-294)||(15541846-15541896)
chr4 (421-449)||(35421325-35421353)
[»] chr3 (30 HSPs)
chr3 (312-462)||(47740015-47740165)
chr3 (312-462)||(35142003-35142150)
chr3 (311-462)||(39149735-39149885)
chr3 (313-462)||(51540697-51540848)
chr3 (241-462)||(3352149-3352372)
chr3 (304-462)||(47301937-47302095)
chr3 (327-462)||(38977831-38977966)
chr3 (313-451)||(34821490-34821628)
chr3 (304-462)||(51258321-51258478)
chr3 (285-462)||(50716151-50716328)
chr3 (285-462)||(50796519-50796696)
chr3 (334-462)||(46622867-46622996)
chr3 (285-456)||(3937286-3937458)
chr3 (372-462)||(501223-501314)
chr3 (312-462)||(3902889-3903039)
chr3 (285-462)||(2358705-2358885)
chr3 (313-462)||(48303918-48304067)
chr3 (374-462)||(34821426-34821514)
chr3 (241-444)||(45244242-45244447)
chr3 (350-462)||(33438486-33438597)
chr3 (396-462)||(43473052-43473118)
chr3 (334-415)||(47123054-47123135)
chr3 (334-415)||(47130420-47130501)
chr3 (378-462)||(52777223-52777306)
chr3 (292-462)||(28872909-28873079)
chr3 (357-461)||(49096311-49096415)
chr3 (246-402)||(42936527-42936685)
chr3 (308-390)||(28830247-28830329)
chr3 (247-292)||(43726386-43726431)
chr3 (380-462)||(30721888-30721974)
[»] chr1 (31 HSPs)
chr1 (285-462)||(33611493-33611671)
chr1 (285-462)||(18583627-18583805)
chr1 (247-462)||(34162804-34163022)
chr1 (247-462)||(17000238-17000454)
chr1 (312-462)||(32817694-32817844)
chr1 (318-462)||(40650758-40650903)
chr1 (313-458)||(42545895-42546039)
chr1 (350-460)||(44573181-44573291)
chr1 (313-462)||(40908017-40908166)
chr1 (281-464)||(43319277-43319462)
chr1 (362-461)||(23442714-23442813)
chr1 (312-462)||(49677419-49677559)
chr1 (334-455)||(15069932-15070053)
chr1 (357-462)||(45046934-45047038)
chr1 (327-461)||(41584754-41584888)
chr1 (378-455)||(24471405-24471481)
chr1 (378-462)||(30829549-30829632)
chr1 (335-462)||(45567959-45568087)
chr1 (369-455)||(49786252-49786338)
chr1 (318-461)||(7011141-7011285)
chr1 (378-462)||(32542388-32542472)
chr1 (335-425)||(52744937-52745027)
chr1 (312-462)||(38885165-38885303)
chr1 (369-462)||(28866714-28866806)
chr1 (312-464)||(38950207-38950347)
chr1 (373-443)||(34006246-34006316)
chr1 (334-461)||(6223821-6223949)
chr1 (247-435)||(27794711-27794903)
chr1 (368-462)||(26723572-26723660)
chr1 (421-449)||(18238805-18238833)
chr1 (246-290)||(49852799-49852843)
[»] scaffold0027 (1 HSPs)
scaffold0027 (313-462)||(142046-142194)
[»] scaffold0182 (1 HSPs)
scaffold0182 (334-462)||(23071-23198)
[»] scaffold0137 (1 HSPs)
scaffold0137 (312-462)||(9580-9730)
[»] scaffold0010 (1 HSPs)
scaffold0010 (312-390)||(140534-140612)


Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 28 - 461
Target Start/End: Complemental strand, 4508821 - 4508386
Alignment:
Q  28 ggcaagagaattacaggcaacaaggacatgtgttattcatgcaatcatccaagtgtaatttcacgcaaagtgccatgtgcaatctcatgcaagaagccat 127  Q
    |||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  4508821 ggcaagagagctacacgcaacaaggacatgtgttattcatgcaatcatccaagtgtaatttcactcaaagtgccatgtgcaatctcatgtaagaagccat 4508722  T
Q  128 gcacatttcatgcaagaaagtggctgctgttggatcctaaaatc--gttggacttggatcttaatcttttgggctttaatctaagggacctaaaaatatg 225  Q
    ||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||| |||||||||||||| |||||| ||||||||||||    
T  4508721 gcacatttcatgcaagaaagtggctgctgatggatcctaaaatctcgttggacttggatcttaatattttgggctttaatttaaggggcctaaaaatatg 4508622  T
Q  226 aagttgtaagattttagggatttacttttcccaccctgtggatttcctcgcgcaccctattttttccaaaatgcccttaagtttttggattttataattc 325  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||| | |||||| ||||||||||  |||||||||||| |    
T  4508621 aagttgtaagattttagggagttacttttcccaccctgtgggtttcctcgcgcgccctatttttccaaaaatgtccttaagtttccggattttataatcc 4508522  T
Q  326 agaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgat 425  Q
    ||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||| ||||||||||    
T  4508521 agaatggtgttttcttttgttagagggtgaaaaaatgagtaacggatttttccggattttataatccagaaatttcaaaaattagggcgtgttacatgat 4508422  T
Q  426 gtttccggattacataatccggaaaccccctaaaca 461  Q
    |||||||||||| |||||||||||| ||||||||||    
T  4508421 gtttccggattatataatccggaaatcccctaaaca 4508386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 308 - 462
Target Start/End: Original strand, 17264332 - 17264486
Alignment:
Q  308 ttttggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaag 407  Q
    ||||||||| ||| || | |||||  ||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||     
T  17264332 ttttggattatatgatcctgaatgatgttttcttttgttacagggtgaaaaaatgagtaacggatttttccggattttgtaatctggaaacttcaaaaaa 17264431  T
Q  408 tagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17264432 tagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 17264486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 247 - 462
Target Start/End: Complemental strand, 3717586 - 3717366
Alignment:
Q  247 ttacttttcccaccctgtggatttcctcgcgcaccctatttttt-----ccaaaatgcccttaagtttttggattttataattcagaatggggttttctt 341  Q
    |||||||||||||||| ||| ||||||||||| | |||||||||     | ||||||||||| |||||  ||||||||||||   |||||| ||||||||    
T  3717586 ttacttttcccaccctttgggtttcctcgcgcgctctattttttttttccaaaaatgcccttgagtttccggattttataatcttgaatggtgttttctt 3717487  T
Q  342 ttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacata 441  Q
    ||||||  |||||| ||||||||||| ||  ||||||| |||||||||||  ||||||||||||| |||||||||||||||||||||||||||||| |||    
T  3717486 ttgttaaagggtgaaaaaatgagtaatgggcttttccgaattttgtaatccggaaacttcaaaaattagggcgcgttacatgatgtttccggattatata 3717387  T
Q  442 atccggaaaccccctaaacac 462  Q
    ||| ||||||| |||||||||    
T  3717386 atctggaaacctcctaaacac 3717366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 247 - 462
Target Start/End: Original strand, 23406656 - 23406872
Alignment:
Q  247 ttacttttcccaccctgtggatttcctcgcgcaccctattttttccaaaa-tgcccttaagtttttggattttataattcagaatggggttttcttttgt 345  Q
    |||||||||||||||||||||||||||||||  ||||||||||| ||||| |||| || | |||  ||||||  |||| | |||||| |||||| |||||    
T  23406656 ttacttttcccaccctgtggatttcctcgcgggccctatttttttcaaaaatgccattgattttccggatttcgtaatccggaatggtgttttcctttgt 23406755  T
Q  346 tagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatcc 445  Q
    ||  |||||| |||  |||| |||  |||||||| |||| ||||||  ||||||||||||| ||||||||||||  ||||||||| ||||||||||||||    
T  23406756 tatagggtgaaaaatggagttacgagtttttccgaatttcgtaatccggaaacttcaaaaaatagggcgcgttagttgatgtttctggattacataatcc 23406855  T
Q  446 ggaaaccccctaaacac 462  Q
    |||||||||||||||||    
T  23406856 ggaaaccccctaaacac 23406872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 334 - 454
Target Start/End: Original strand, 7412776 - 7412896
Alignment:
Q  334 gttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccgg 433  Q
    ||||||||||||||  |||||| |||||||||||||| ||||||||||||||||||||  ||||||||||||| ||||||| ||||||||||||||||||    
T  7412776 gttttcttttgttaaagggtgaaaaaatgagtaacgggtttttccggattttgtaatccggaaacttcaaaaaatagggcgtgttacatgatgtttccgg 7412875  T
Q  434 attacataatccggaaacccc 454  Q
    ||||||||||||| |||||||    
T  7412876 attacataatccgaaaacccc 7412896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 362 - 462
Target Start/End: Original strand, 32035089 - 32035189
Alignment:
Q  362 gagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaaca 461  Q
    |||| |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32035089 gagttacggatttttccggattttgtaatccggaaacttcaaaaaatagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaaca 32035188  T
Q  462 c 462  Q
    |    
T  32035189 c 32035189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 335 - 462
Target Start/End: Complemental strand, 14587770 - 14587643
Alignment:
Q  335 ttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccgga 434  Q
    |||||||||||||  |||||| ||||||||||| |||||||||||||||||||||||   |||||| ||||| |||||||||||||||||||||||| ||    
T  14587770 ttttcttttgttaaagggtgaaaaaatgagtaagggatttttccggattttgtaatccgaaaactttaaaaaatagggcgcgttacatgatgtttcctga 14587671  T
Q  435 ttacataatccggaaaccccctaaacac 462  Q
    |||||||||||  |||||||||||||||    
T  14587670 ttacataatccataaaccccctaaacac 14587643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 312 - 462
Target Start/End: Original strand, 5699484 - 5699634
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    |||||| ||||| | |||||| |||||| |||||||  |||||| |||  |||| |||| ||||| || |||||||||||  ||||||| ||||| ||||    
T  5699484 ggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacgggttttttcgaattttgtaatccggaaacttgaaaaaatagg 5699583  T
Q  412 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5699584 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 5699634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 268 - 462
Target Start/End: Complemental strand, 2813506 - 2813307
Alignment:
Q  268 tttcctcgcgcaccctat---tttttccaaaatgcccttaagtttttggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgag 364  Q
    ||||||||||| ||||||   |||||| ||||||  ||| || ||  |||||| ||||||| |||||| |||||| ||| |||  |||||| |||  |||    
T  2813506 tttcctcgcgctccctatctttttttcaaaaatgttcttgagcttccggatttcataattcggaatggtgttttcctttattatagggtgaaaaatggag 2813407  T
Q  365 taacggatttttccggat--tttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    | || |||||||||||||  |||||||||  ||||||||||||| || || | |||||||||||||||||||||||||||||||||||||||||||||||    
T  2813406 ttacagatttttccggatattttgtaatccggaaacttcaaaaaataaggtgtgttacatgatgtttccggattacataatccggaaaccccctaaacac 2813307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 312 - 461
Target Start/End: Complemental strand, 33413579 - 33413431
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    |||||| ||||| | |||||| |||||| |||||||  |||||| |||  |||| ||| ||||||| | |||||||||||  ||||||||||||| ||||    
T  33413579 ggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacgaatttttctgaattttgtaatccggaaacttcaaaaa-tagg 33413481  T
Q  412 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaaca 461  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  33413480 gcgcgttacatgatgtttccagattacataatctggaaaccccctaaaca 33413431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 305 - 444
Target Start/End: Complemental strand, 1945770 - 1945630
Alignment:
Q  305 agtttttggattttataattcagaatggggtttt-cttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaa 403  Q
    |||||| |||||||||||| | |||||| ||||| ||||||  |  |||||| ||||||||| |||||||||||||||||||||||||   |||||||||    
T  1945770 agttttcggattttataatccggaatggtgtttttcttttgacaaagggtgaaaaaatgagttacggatttttccggattttgtaatccgaaaacttcaa 1945671  T
Q  404 aaagtagggcgcgttacatgatgtttccggattacataatc 444  Q
    ||| ||||| ||||||||| |  ||||||||||| ||||||    
T  1945670 aaactagggtgcgttacataaattttccggattatataatc 1945630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 368 - 460
Target Start/End: Original strand, 9905100 - 9905192
Alignment:
Q  368 cggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaac 460  Q
    |||||||||||||||||||||||   |||| |||||||| ||||||||| ||| |||| |||||||||||||||||||| | |||||||||||    
T  9905100 cggatttttccggattttgtaattcggaaatttcaaaaaatagggcgcgctacgtgatttttccggattacataatccgaacaccccctaaac 9905192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 357 - 462
Target Start/End: Complemental strand, 24604550 - 24604445
Alignment:
Q  357 aaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccct 456  Q
    ||||||||| | ||||||||||| ||||||||||| | |||||||||||| |||||||  ||||||||| | | |||||||||||||||| | ||||| |    
T  24604550 aaaatgagttaaggatttttccgaattttgtaatccaaaaacttcaaaaaatagggcgtcttacatgatttcttcggattacataatccgaacacccctt 24604451  T
Q  457 aaacac 462  Q
    ||||||    
T  24604450 aaacac 24604445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 337 - 462
Target Start/End: Complemental strand, 21517679 - 21517564
Alignment:
Q  337 ttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggatt 436  Q
    |||||||||||  |||||| ||||||| |||||||||||||||||||            |||| |||||| ||||||| | ||||| |||||||||||||    
T  21517679 ttcttttgttaaagggtgaaaaaatgaataacggatttttccggatt----------acaactccaaaaaatagggcgtgctacataatgtttccggatt 21517590  T
Q  437 acataatccggaaaccccctaaacac 462  Q
    ||||||| |||||||||| |||||||    
T  21517589 acataattcggaaaccccttaaacac 21517564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 403 - 443
Target Start/End: Original strand, 5638879 - 5638919
Alignment:
Q  403 aaaagtagggcgcgttacatgatgtttccggattacataat 443  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  5638879 aaaaatagggcgcgttacatgatgtttccggattacataat 5638919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 148
Target Start/End: Original strand, 32086280 - 32086318
Alignment:
Q  110 tctcatgcaagaagccatgcacatttcatgcaagaaagt 148  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  32086280 tctcatgcaagaaaccatgcacatttcatgcaagaaagt 32086318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 290
Target Start/End: Complemental strand, 16396431 - 16396388
Alignment:
Q  247 ttacttttcccaccctgtggatttcctcgcgcaccctatttttt 290  Q
    |||||||||||||||| || |||||||||||| |||||||||||    
T  16396431 ttacttttcccaccctatgcatttcctcgcgcgccctatttttt 16396388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 291
Target Start/End: Complemental strand, 440169 - 440125
Alignment:
Q  247 ttacttttcccaccctgtggatttcctcgcgcaccctattttttc 291  Q
    |||||||||||||||| ||  ||||||||||| ||||||||||||    
T  440169 ttacttttcccaccctatgtctttcctcgcgcgccctattttttc 440125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 4e-70; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 253 - 462
Target Start/End: Complemental strand, 28230760 - 28230551
Alignment:
Q  253 ttcccaccctgtggatttcctcgcgcaccctattttttcc-aaaatgcccttaagtttttggattttataattcagaatggggttttcttttgttagcgg 351  Q
    |||||||||||||| ||||||||||| | |||||||| || ||||||||||| |||||| |||||||||||| |||||||| ||||||||||||||  ||    
T  28230760 ttcccaccctgtgggtttcctcgcgcgctctatttttcccgaaaatgcccttgagttttcggattttataatccagaatggtgttttcttttgttaaagg 28230661  T
Q  352 gtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaac 451  Q
    || | |||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  28230660 gtaa-aaaatgagtaacggatttttccggattttgtaatccggaaacttcaaaaaatagggcgcgttacttgatgtttccggattacataatccggaaac 28230562  T
Q  452 cccctaaacac 462  Q
    |||||||||||    
T  28230561 cccctaaacac 28230551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 322 - 462
Target Start/End: Original strand, 43737060 - 43737200
Alignment:
Q  322 attcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttaca 421  Q
    |||| |||||| ||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||    
T  43737060 attcggaatggtgttttcttttgttaaagggtgaaaaaatgagtaacggatttttccggattttgtaatccggaaacttcaaaaaatagggcgcgttaca 43737159  T
Q  422 tgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  43737160 tgatgttttcggattacataatccggaaaccccctaaacac 43737200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 242 - 462
Target Start/End: Complemental strand, 36468840 - 36468620
Alignment:
Q  242 gggatttacttttcccaccctgtggatttcctcgcgcaccctatttttt--ccaaaatgcccttaagtttttggattttataattcagaatggggttttc 339  Q
    ||||||||||||||||||||| ||| ||| ||||||| | |||||||||  | ||||||||||| | |||    |||||||||||| |||||  ||||||    
T  36468840 gggatttacttttcccaccctatgggtttactcgcgcgctctattttttttcaaaaatgcccttgaatttccaaattttataattcggaatgatgttttc 36468741  T
Q  340 ttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattaca 439  Q
    ||||||||  || ||| |||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||| |||||||||||||| | |||||||    
T  36468740 ttttgttaaagg-tgaaaaaatgagtaacggatttttccggattttgtaatatggaaacttcaaaaaatagggcgtgttacatgatgttt-cagattaca 36468643  T
Q  440 taatccggaaaccccctaaacac 462  Q
    |||||||||||||||||||||||    
T  36468642 taatccggaaaccccctaaacac 36468620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 283 - 462
Target Start/End: Original strand, 36629100 - 36629281
Alignment:
Q  283 tattttttccaaaa-tgcccttaagtttttggattttataattcagaatggggtttt-cttttgttagcgggtgagaaaatgagtaacggatttttccgg 380  Q
    |||||||||||||| |||| || |||||  ||||||||||||   |||||| ||||| |||||||||| |||||| ||||||||||||||||||||||||    
T  36629100 tattttttccaaaaatgccattgagtttccggattttataatatggaatggtgtttttcttttgttagagggtgaaaaaatgagtaacggatttttccgg 36629199  T
Q  381 attttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||||||| | ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  36629200 attttgtaatctggtaacttaaaaaaatagggcgcgttacatgatgtttccggattacataatctggaaaccctctaaacac 36629281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 268 - 462
Target Start/End: Complemental strand, 24042470 - 24042271
Alignment:
Q  268 tttcctcgcgcaccctatttttt-----ccaaaatgcccttaagtttttggattttataattcagaatggggttttcttttgttagcgggtgagaaaatg 362  Q
    ||||||||||| |||||||||||     | ||||||||||| ||||| || |||| ||||||| |||||| |||||| |||| ||  |||||| |||  |    
T  24042470 tttcctcgcgcgccctatttttttcttccaaaaatgcccttgagtttctgaatttcataattcggaatggtgttttcctttgatatagggtgaaaaatgg 24042371  T
Q  363 agtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||| |||| ||||||||||||||||||||  ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24042370 agttacgggtttttccggattttgtaatccggaaacttcaaaaaataaggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 24042271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 285 - 462
Target Start/End: Original strand, 47202392 - 47202570
Alignment:
Q  285 ttttttccaaaatgcccttaagttttt-ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggatt 383  Q
    ||||||| ||||||||||| || |||  |||||| ||||| | |||||| ||||||||||||||  |||||| |||  |||| |||||||||||| ||||    
T  47202392 ttttttcaaaaatgcccttgaggtttccggatttcataatccggaatggtgttttcttttgttatagggtgaaaaatggagttacggatttttccagatt 47202491  T
Q  384 ttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||||||||   |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47202492 ttgtaatccgaaaacttcaaaaaatagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 47202570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 312 - 462
Target Start/End: Original strand, 3936034 - 3936184
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    ||||| |||||| | |||||  ||||||||||||||  | |||| |||||||||||||| ||||||||||||||||||||  ||||||||||||| ||||    
T  3936034 ggattatataatccggaatgatgttttcttttgttaaagagtgaaaaaatgagtaacgggtttttccggattttgtaatccggaaacttcaaaaaatagg 3936133  T
Q  412 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  3936134 gcgcgttacatgatgtttccggattacataatccaaaaaccccctaaacac 3936184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 313 - 462
Target Start/End: Complemental strand, 19225831 - 19225681
Alignment:
Q  313 gattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggattttt-ccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    |||| ||||||||  ||||  ||||||||||||||  |||||| |||||||||||||||||||| ||||||||||||||| | |||||||||||| ||||    
T  19225831 gattatataattcgaaatgatgttttcttttgttaaagggtgaaaaaatgagtaacggattttttccggattttgtaatccaaaaacttcaaaaaatagg 19225732  T
Q  412 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    | ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19225731 gtgcgttacatgatgtttccggattacataatccggaaatcccctaaacac 19225681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 334 - 462
Target Start/End: Complemental strand, 37518506 - 37518378
Alignment:
Q  334 gttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccgg 433  Q
    |||||||||| |||  |||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||||| ||||||||| ||||||||    
T  37518506 gttttcttttattaaagggtgaaaaaataagtaacggatttttccggattttataatccagaaacttcaaaaaatagggcgtgttacatgaagtttccgg 37518407  T
Q  434 attacataatccggaaaccccctaaacac 462  Q
    |||||||||||||||||||||||||||||    
T  37518406 attacataatccggaaaccccctaaacac 37518378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 305 - 462
Target Start/End: Original strand, 36408291 - 36408447
Alignment:
Q  305 agtttttggattttataattcagaatggggttttcttttgttagcgggtgagaaaa-tgagtaacggatttttccggattttgtaatctagaaacttcaa 403  Q
    |||||| ||||||||||||| | ||||| ||||||||  ||||  |||||| |||| ||||||||||||||||||||||||||||||| |||||||||||    
T  36408291 agttttcggattttataatttaaaatggtgttttctt--gttaaagggtgaaaaaaatgagtaacggatttttccggattttgtaatccagaaacttcaa 36408388  T
Q  404 aaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||| || |||||| ||||||||||||||||||||||||||||||||||| | |||||||    
T  36408389 aaaataaggcgcgatacatgatgtttccggattacataatccggaaacctcataaacac 36408447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 367 - 462
Target Start/End: Original strand, 8154880 - 8154975
Alignment:
Q  367 acggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8154880 acggatttttccggattttgtaatccggaaacttcaaaaaatagggcgcgttacatgatgtttccggattacataatccgaaaaccccctaaacac 8154975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 312 - 462
Target Start/End: Complemental strand, 42925874 - 42925724
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    |||||| ||||| | |||||| |||||| |||||||  |||||| |||  |||| |||| ||||||| ||||||||||||  ||||||||||||| ||||    
T  42925874 ggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacgggtttttcctgattttgtaatccggaaacttcaaaaaatagg 42925775  T
Q  412 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  42925774 gcgcattacatgatgttttcggattacataatccggaaaccccctaaacac 42925724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 327 - 462
Target Start/End: Original strand, 31642982 - 31643117
Alignment:
Q  327 gaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatg 426  Q
    |||||| |||||| |||||||  |||||| |||  |||| ||||||||||| |||| ||||||| | ||||||||||||| ||||| | |||||||||||    
T  31642982 gaatggtgttttcgtttgttatagggtgaaaaatggagttacggatttttctggatcttgtaatttggaaacttcaaaaaatagggtgtgttacatgatg 31643081  T
Q  427 tttccggattacataatccggaaaccccctaaacac 462  Q
    ||||||||||||||||||||||||||||| ||||||    
T  31643082 tttccggattacataatccggaaaccccccaaacac 31643117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 312 - 462
Target Start/End: Complemental strand, 3304992 - 3304841
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttca-aaaagtag 410  Q
    |||||| ||||||  |||||| |||||| |||||||  |||||| |||  |||| ||||||||||||||||||||||||| |||||||||| |||| |||    
T  3304992 ggatttcataatttggaatggtgttttcctttgttatagggtgaaaaatggagttacggatttttccggattttgtaatccagaaacttcaaaaaaatag 3304893  T
Q  411 ggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    || | |||||||||| |||||||||||||||||||  |||||||| ||||||    
T  3304892 ggtgtgttacatgatatttccggattacataatccaaaaaccccccaaacac 3304841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 312 - 441
Target Start/End: Complemental strand, 42877278 - 42877149
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    ||||| |||||| | |||||  ||||||||||||||  |||||| |||||||||||||  ||||||||||||||||||||  |||| |  ||||| ||||    
T  42877278 ggattatataatccggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacgtgtttttccggattttgtaatcgggaaaataaaaaaaatagg 42877179  T
Q  412 gcgcgttacatgatgtttccggattacata 441  Q
    ||||||||||| ||||||||||||||||||    
T  42877178 gcgcgttacataatgtttccggattacata 42877149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 284 - 462
Target Start/End: Original strand, 6467593 - 6467773
Alignment:
Q  284 attttttccaaaatgccctt-aagtttttggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggat 382  Q
    |||||| | ||||||||||| ||||||  ||||||||| |||| |||||| |||||| |||||||   ||||| ||||||||| ||||||||||||| ||    
T  6467593 atttttccaaaaatgcccttgaagtttccggattttatgattcggaatggtgttttcctttgttaaatggtga-aaaatgagttacggatttttccgaat 6467691  T
Q  383 tttgtaa--tctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    | |||||  || |||||  ||||||| ||||| | |||||||||| | | |||||||||||||||| | |||||||||||||    
T  6467692 tatgtaaaatccagaaatctcaaaaaatagggtgtgttacatgatttgttcggattacataatccgaacaccccctaaacac 6467773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 454
Target Start/End: Complemental strand, 33574210 - 33574125
Alignment:
Q  369 ggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaacccc 454  Q
    ||||||||  |||||||||||||  ||||||| ||||| ||||| |||||||||||||||| |||||||||||||||| |||||||    
T  33574210 ggatttttttggattttgtaatccggaaactttaaaaaatagggtgcgttacatgatgttttcggattacataatccgaaaacccc 33574125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 312 - 464
Target Start/End: Original strand, 33151133 - 33151285
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaa-tgagtaacggatttttccggattttgtaatctagaaacttcaaaaag-ta 409  Q
    ||||| ||||||  ||||||  ||||||||||||||  |||||| |||| |||| |||||||||||   |||||||||||   ||||||| |||||  ||    
T  33151133 ggattatataatctagaatgatgttttcttttgttaaagggtgaaaaaaatgaggaacggattttta--gattttgtaattcggaaacttaaaaaaaata 33151230  T
Q  410 gggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacactc 464  Q
    |||||| ||| ||||||| | |||||||||||||||||||| |||||||||||||    
T  33151231 gggcgcattatatgatgtcttcggattacataatccggaaatcccctaaacactc 33151285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 350 - 422
Target Start/End: Original strand, 9151778 - 9151850
Alignment:
Q  350 gggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacat 422  Q
    |||||| |||||||||||| | ||||||||||||||||||||  ||||||||||||| |||||||| ||||||    
T  9151778 gggtgaaaaaatgagtaacaggtttttccggattttgtaatccggaaacttcaaaaaatagggcgcattacat 9151850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 412
Target Start/End: Original strand, 28346118 - 28346173
Alignment:
Q  357 aaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtaggg 412  Q
    ||||||||| |||||| |||||| ||||||||||| ||||||||||||||||||||    
T  28346118 aaaatgagttacggatgtttccgaattttgtaatccagaaacttcaaaaagtaggg 28346173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 462
Target Start/End: Complemental strand, 31985661 - 31985601
Alignment:
Q  402 aaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||||| |||||||||||||||||| ||| ||||||||||||| || | ||||| |||||||    
T  31985661 aaaaaatagggcgcgttacatgattttttcggattacataattcgaacaccccttaaacac 31985601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 132; Significance: 3e-68; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 239 - 462
Target Start/End: Complemental strand, 3704 - 3478
Alignment:
Q  239 ttagggatttacttttcccaccctgtggatttcctcgcgcaccctattttttccaaaa-tgcccttaagtttttggattttataattcagaatggggttt 337  Q
    |||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||| ||||||| |||||  | || ||||||| | |||||| ||||    
T  3704 ttagggatttacttttcccaccctttgggtttcctcgcgcgccctattttttccaaaaatgcccttgagtttccgaatcttataatccggaatggtgttt 3605  T
Q  338 tcttttgttagcgggtgagaaaatgagtaacggatttttc--cggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggat 435  Q
    ||||||||||  |||||| ||||||||||||| ||||||   || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3604 tcttttgttaaagggtgaaaaaatgagtaacgaattttttttcgaattttgtaatctagaaacttcaaaaaatagggcgcgttacatgatgtttccggat 3505  T
Q  436 tacataatccggaaaccccctaaacac 462  Q
    ||||||||||||||||||| |||||||    
T  3504 tacataatccggaaaccccataaacac 3478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 6e-60; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 250 - 462
Target Start/End: Original strand, 44106093 - 44106299
Alignment:
Q  250 cttttcccaccctgtggatttcctcgcgcaccctattttttccaaaatgcccttaagtttttggattttataattcagaatggggttttcttttgttagc 349  Q
    ||||||||||| ||||| ||| ||||||| |||||||||      ||| ||||| |||||  ||||||||||||  ||||||| ||||||||||||||      
T  44106093 cttttcccaccatgtgggttttctcgcgcgccctatttt------aataccctttagtttccggattttataatctagaatggtgttttcttttgttaaa 44106186  T
Q  350 gggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaa 449  Q
    |||||| |||||||||||||||||||||| ||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44106187 gggtgaaaaaatgagtaacggatttttccagattttgtaatccggaaacttcaaaaaatagggcgcgttacatgatgtttccggattacataatccggaa 44106286  T
Q  450 accccctaaacac 462  Q
    |||||||||||||    
T  44106287 accccctaaacac 44106299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 334 - 462
Target Start/End: Complemental strand, 27928152 - 27928024
Alignment:
Q  334 gttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccgg 433  Q
    ||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||    
T  27928152 gttttcttttgttaaagggtgaaaaaatgagtaacggatttttccggattttgtaatccggaaacttcaaaaaatagggcgcgttacatgatgtttccgg 27928053  T
Q  434 attacataatccggaaaccccctaaacac 462  Q
    ||||||||||| |||||||||||||||||    
T  27928052 attacataatcaggaaaccccctaaacac 27928024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 312 - 462
Target Start/End: Complemental strand, 8885686 - 8885536
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    ||||| |||||| | |||||  ||||||||||||||  | |||| |||||||||||||| ||||||||||||||||||||  ||||||||||||| ||||    
T  8885686 ggattatataatccggaatgatgttttcttttgttaaagagtgaaaaaatgagtaacgggtttttccggattttgtaatccggaaacttcaaaaaatagg 8885587  T
Q  412 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8885586 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 8885536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 247 - 462
Target Start/End: Original strand, 16310456 - 16310675
Alignment:
Q  247 ttacttttcccaccctgtggatttcctcgcgcaccctatttttt----ccaaaatgcccttaagtttttggattttataattcagaatggggttttcttt 342  Q
    |||||||||||||||||||| ||||||||||| |||||||||||    | ||||| ||||| ||||| | ||||| ||||| |||||||| |||||| ||    
T  16310456 ttacttttcccaccctgtgggtttcctcgcgcgccctattttttttttcaaaaattcccttgagtttctcgatttcataatccagaatggtgttttcctt 16310555  T
Q  343 tgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataa 442  Q
    |||||  |||||| |||  |||| || | ||||||||||||||||||||  ||||||||||||| ||||| |||||| ||||| ||||||||||||| ||    
T  16310556 tgttatggggtgaaaaatggagttacaggtttttccggattttgtaatccggaaacttcaaaaaatagggtgcgttagatgatttttccggattacacaa 16310655  T
Q  443 tccggaaaccccctaaacac 462  Q
    ||| ||||| ||||||||||    
T  16310656 tccagaaactccctaaacac 16310675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 247 - 462
Target Start/End: Original strand, 37248415 - 37248634
Alignment:
Q  247 ttacttttcccaccctgtggatttcctcgcgcaccctattttttcc----aaaatgcccttaagtttttggattttataattcagaatggggttttcttt 342  Q
    ||||||||||||||||  || ||||||||||| ||||||||||| |    ||||||||||| |||||  |||||| | ||| |||||||| |||||| ||    
T  37248415 ttacttttcccaccctaggggtttcctcgcgcgccctatttttttcttcaaaaatgcccttgagtttccggatttcaaaatccagaatggtgttttcctt 37248514  T
Q  343 tgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataa 442  Q
    |||||  |||||| |||  |||| |||| |||||| |||||||||||||   |||||| ||||| |||||||||||| ||||||||||||||||||||||    
T  37248515 tgttatagggtgaaaaatggagttacgggtttttctggattttgtaatccgaaaacttaaaaaaatagggcgcgttagatgatgtttccggattacataa 37248614  T
Q  443 tccggaaaccccctaaacac 462  Q
    ||| ||||||||||||||||    
T  37248615 tccagaaaccccctaaacac 37248634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 314 - 462
Target Start/End: Original strand, 3094609 - 3094757
Alignment:
Q  314 attttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggc 413  Q
    |||| ||||||| |||||| |||||| |||||||  |||||| |||  |||| |||| ||||||||||||||||||||  ||||||||||||| ||||||    
T  3094609 atttaataattcggaatggtgttttcctttgttatagggtgaaaaatggagttacgggtttttccggattttgtaatccggaaacttcaaaaaatagggc 3094708  T
Q  414 gcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||    
T  3094709 gcattacatgatgtttccggattacataatccggaaaccccctaaacac 3094757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 327 - 462
Target Start/End: Complemental strand, 31520110 - 31519975
Alignment:
Q  327 gaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatg 426  Q
    |||||| |||||| |||||||  |||||| |||  |||| |||| |||||||||||||||||||| |||||||||||||| ||| |||||||||||||||    
T  31520110 gaatggtgttttcctttgttatagggtgaaaaatggagttacggctttttccggattttgtaatccagaaacttcaaaaaatagagcgcgttacatgatg 31520011  T
Q  427 tttccggattacataatccggaaaccccctaaacac 462  Q
    ||||||||||||||||||||||||||||||||||||    
T  31520010 tttccggattacataatccggaaaccccctaaacac 31519975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 334 - 462
Target Start/End: Original strand, 28916731 - 28916859
Alignment:
Q  334 gttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccgg 433  Q
    ||||||||||||||  |||||| |||||| ||||||| ||||||||||||||||||||  ||||||||||||| |||||||||||| |||||||||| ||    
T  28916731 gttttcttttgttaaagggtgaaaaaatgggtaacgggtttttccggattttgtaatccggaaacttcaaaaaatagggcgcgttaaatgatgtttctgg 28916830  T
Q  434 attacataatccggaaaccccctaaacac 462  Q
    ||||||||| |||||||||||||||||||    
T  28916831 attacataaaccggaaaccccctaaacac 28916859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 334 - 462
Target Start/End: Complemental strand, 42281105 - 42280974
Alignment:
Q  334 gttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgtta---catgatgtttc 430  Q
    ||||| ||||||||  |||||| |||||||||||||||||||||||||||| ||||||   |||||||||||| ||| ||||||||   |||||||||||    
T  42281105 gtttttttttgttaaagggtgaaaaaatgagtaacggatttttccggatttcgtaatccgaaaacttcaaaaaatagagcgcgttacatcatgatgtttc 42281006  T
Q  431 cggattacataatccggaaaccccctaaacac 462  Q
    | ||||||||||||||||||||||||||||||    
T  42281005 cagattacataatccggaaaccccctaaacac 42280974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 285 - 462
Target Start/End: Original strand, 21004288 - 21004465
Alignment:
Q  285 ttttttccaaaatgcccttaagtttttg-gattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggatt 383  Q
    ||||||| ||||||||||| || |||   ||||| ||||| | |||||| |||||| |||||||  |||||| |||  |||| |||||||||||||||||    
T  21004288 ttttttcaaaaatgcccttgaggtttccagatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacggatttttccggatt 21004387  T
Q  384 ttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||||||||  ||||||| ||||| || |||||||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  21004388 ttgtaatccggaaactttaaaaaataaggcgcgttacat-atgtttccggattacataatccgaaaactccctaaacac 21004465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 318 - 462
Target Start/End: Original strand, 34853262 - 34853404
Alignment:
Q  318 tataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgt 417  Q
    |||||||| |||||  ||||| ||||||||  |||| |||||||||||| ||| ||||||||||||||||||||   |||||| ||||| ||||||||||    
T  34853262 tataattcggaatgatgttttattttgttaaagggtaagaaaatgagta-cgggtttttccggattttgtaatccgaaaactttaaaaaatagggcgcgt 34853360  T
Q  418 tacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||||||||||||||||| |||| |||||||| ||||||||    
T  34853361 tacatgatgtttccggattaca-aatctggaaaccctctaaacac 34853404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 312 - 462
Target Start/End: Original strand, 9073430 - 9073580
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    ||||| ||||||||  ||||  ||||||||||||||  |||| | ||||||||||||||| |||| |||||||  |||||  ||||||||||||| || |    
T  9073430 ggattatataattcgaaatgatgttttcttttgttaaagggttaaaaaatgagtaacggactttttcggatttgttaatccggaaacttcaaaaaataag 9073529  T
Q  412 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
       ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9073530 attcgttacatgatgtttccggattacataatccagaaaccccctaaacac 9073580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 247 - 451
Target Start/End: Complemental strand, 36404453 - 36404249
Alignment:
Q  247 ttacttttcccaccctgtggatttcctcgcgcaccctattttttccaaaa-tgcccttaagtttttggattttataattcagaatggggttttcttttgt 345  Q
    |||||||||||||||| | | ||||||||||| |||||||||||| |||| ||| ||| |  ||  |||||||||||| | |||||| |||| | |||||    
T  36404453 ttacttttcccaccctatagttttcctcgcgcgccctattttttcaaaaaatgctcttgaagttccggattttataatccggaatggagtttccctttgt 36404354  T
Q  346 tagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatcc 445  Q
    ||  |||||| ||||||||| ||||||| |||||||||||||||||   |||  ||||||| ||||||| |||||||||| ||| ||||||| |||||||    
T  36404353 taaagggtgaaaaaatgagttacggattattccggattttgtaatccgaaaatctcaaaaaatagggcgtgttacatgat-ttttcggattatataatcc 36404255  T
Q  446 ggaaac 451  Q
    | ||||    
T  36404254 gaaaac 36404249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 293 - 459
Target Start/End: Original strand, 41530575 - 41530743
Alignment:
Q  293 aaaatgccctt-aagtttttggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatc 391  Q
    ||||||||||| |||||| ||||||||||||| | |||||  |||||| |||||||  |||||  ||||||||| ||||||||||||| |||||||||||    
T  41530575 aaaatgcccttgaagtttctggattttataatccggaatgatgttttcctttgttaaagggtggaaaaatgagttacggatttttccgaattttgtaatc 41530674  T
Q  392 tagaaacttcaaaaagtagggcgcgttacatga-tgtttccggattacataatccggaaaccccctaaa 459  Q
      ||||  ||||||| ||||||||||||||||| | ||| | |||||||||||| | | ||||||||||    
T  41530675 cggaaatctcaaaaaatagggcgcgttacatgatttttttcagattacataatctgaacaccccctaaa 41530743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 368 - 458
Target Start/End: Complemental strand, 35676715 - 35676625
Alignment:
Q  368 cggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaa 458  Q
    ||||||||||||||||||||||||  |||||| |||||| ||||||||| || ||||| |||||||||||||||||||| | |||||||||    
T  35676715 cggatttttccggattttgtaatccggaaactacaaaaaatagggcgcgctatatgatttttccggattacataatccgaacaccccctaa 35676625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 399 - 462
Target Start/End: Original strand, 40994805 - 40994868
Alignment:
Q  399 ttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  40994805 ttcaaaaaatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacac 40994868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 313 - 462
Target Start/End: Complemental strand, 7971229 - 7971080
Alignment:
Q  313 gattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtaggg 412  Q
    ||||| |||||  ||||||| |||||| || ||||  |||||| |||  |||| |||||||||||||||||||||||||| ||||||||||||| ||||     
T  7971229 gatttcataatctagaatggcgttttccttcgttatagggtgaaaaacggagttacggatttttccggattttgtaatctggaaacttcaaaaa-tagga 7971131  T
Q  413 cgcgttacatgatg-tttccggattacataatccggaaaccccctaaacac 462  Q
    |||| ||| ||||| |||| ||||||||||||||  | ||||| |||||||    
T  7971130 cgcgctacgtgatgttttctggattacataatccaaacaccccataaacac 7971080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 380 - 449
Target Start/End: Complemental strand, 11698451 - 11698382
Alignment:
Q  380 gattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaa 449  Q
    ||||||||||||  ||||||||||||| || | || ||||||||||||||||||||||||||||||||||    
T  11698451 gattttgtaatccggaaacttcaaaaaataagacgtgttacatgatgtttccggattacataatccggaa 11698382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 37099714 - 37099664
Alignment:
Q  244 gatttacttttcccaccctgtggatttcctcgcgcaccctattttttccaa 294  Q
    ||||||||  ||| ||||||||  |||||||||||||||||||||||||||    
T  37099714 gatttactaatcctaccctgtgcttttcctcgcgcaccctattttttccaa 37099664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 9138081 - 9138130
Alignment:
Q  247 ttacttttcccaccctgtggatttcctcgcgcaccctattttttccaaaa 296  Q
    |||||||||||||||| ||| ||||||||||| |||| |||||| |||||    
T  9138081 ttacttttcccaccctatggctttcctcgcgcgccctgtttttttcaaaa 9138130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 2e-57; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 245 - 461
Target Start/End: Original strand, 38871491 - 38871708
Alignment:
Q  245 atttacttttcccaccctgtggatttcctcgcgcaccctattttttccaaaa-tgcccttaagtttttggattttataattcagaatggggttttctttt 343  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |  |||| |||||| |||||||||||| | |||||| ||||||||||    
T  38871491 atttactttttccaccctgtgggtttcctcgcgcaccctatttttttcaaaaatatccttgagttttcggattttataatccggaatggtgttttctttt 38871590  T
Q  344 gttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataat 443  Q
    ||||    || | |||||||||||||||||||||||||||||||||||   |||||||| ||| ||||| ||||||||||||||||||||||||||||||    
T  38871591 gttaaaaagttaaaaaatgagtaacggatttttccggattttgtaatccgaaaacttcataaaatagggggcgttacatgatgtttccggattacataat 38871690  T
Q  444 ccggaaaccccctaaaca 461  Q
    ||| |||||| |||||||    
T  38871691 ccgaaaaccctctaaaca 38871708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 242 - 462
Target Start/End: Original strand, 20891429 - 20891651
Alignment:
Q  242 gggatttacttttcccaccctgtggatttcctcgcgcaccctattttttccaaaa-tgcccttaagtttttggattttataattcagaatggggttttct 340  Q
    |||| |||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||| ||| |  |||||||||||| |  ||||| |||||||    
T  20891429 gggaattacttttcccaccctgtgggtttcctcgcgcgccttattttttccaaaaatgcccttgagtatccggattttataatccgaaatggtgttttct 20891528  T
Q  341 tttgttagcgggtgagaaaa-tgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattaca 439  Q
    ||| |||   ||||| |||| |||||||||||||||||||||||||||||||  ||||||||||||| ||||||  ||||||||||||||||| ||||||    
T  20891529 tttattaaatggtgaaaaaaatgagtaacggatttttccggattttgtaatccggaaacttcaaaaaatagggcatgttacatgatgtttccgaattaca 20891628  T
Q  440 taatccggaaaccccctaaacac 462  Q
    ||||||| |||||||||||||||    
T  20891629 taatccgaaaaccccctaaacac 20891651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 241 - 462
Target Start/End: Complemental strand, 24203986 - 24203767
Alignment:
Q  241 agggatttacttttcccaccctgtggatttcctcgcgcaccctattttttcc--aaaatgcccttaagtttttggattttataattcagaatggggtttt 338  Q
    |||||||||||||| ||| ||||||| ||||||||||  ||||||||||| |  |||||||| || |||||  |||||||||||| | |||||| |||||    
T  24203986 agggatttactttttccatcctgtgggtttcctcgcgtgccctatttttttccaaaaatgccattgagtttccggattttataatccggaatggtgtttt 24203887  T
Q  339 cttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattac 438  Q
    |||||||||  |||||  ||||||| |||| ||||||| ||||||||||||||     |||||||||| |||||||||||||||||||||||||||||||    
T  24203886 cttttgttaaagggtggaaaaatgattaacagattttttcggattttgtaatc----gacttcaaaaaatagggcgcgttacatgatgtttccggattac 24203791  T
Q  439 ataatccggaaaccccctaaacac 462  Q
    ||||||||||||||||||||||||    
T  24203790 ataatccggaaaccccctaaacac 24203767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 247 - 462
Target Start/End: Original strand, 25746845 - 25747063
Alignment:
Q  247 ttacttttcccaccctgtggatttcctcgcgcaccctatttttt----ccaaaatg-cccttaagtttttggattttataattcagaatggggttttctt 341  Q
    |||||||||||||||||| | |||||||||||||||||||||||    | |||||| ||||| |||||  |||||||||||||| |||||  ||||||||    
T  25746845 ttacttttcccaccctgttggtttcctcgcgcaccctatttttttctccaaaaatgccccttgagtttccggattttataattcggaatgatgttttctt 25746944  T
Q  342 ttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacata 441  Q
    ||||||    |||| ||||||||||||||||||||||||||||| |||||  ||||||||||||| |||||||||||||||||||||| |||||||||||    
T  25746945 ttgtta-aaagtgaaaaaatgagtaacggatttttccggattttctaatccggaaacttcaaaaa-tagggcgcgttacatgatgttttcggattacata 25747042  T
Q  442 atccggaaaccccctaaacac 462  Q
    ||||||||| |||||||||||    
T  25747043 atccggaaatcccctaaacac 25747063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 242 - 462
Target Start/End: Original strand, 15957567 - 15957787
Alignment:
Q  242 gggatttacttttcccaccctgtggatttcctcgcgcaccctattttttccaaaa-tgcccttaagtttttggattttataattcagaatggggttttct 340  Q
    |||| ||||||||  |||| | |||||||||||| || | ||||||||||||||| |||| || |||||| |||||||||||| |  ||||| |||||||    
T  15957567 gggaattacttttttcaccttatggatttcctcgtgcgctctattttttccaaaaatgcctttgagttttcggattttataatccgaaatggtgttttct 15957666  T
Q  341 tttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacat 440  Q
    |||||||  |||||| ||||||||||| ||||||||||||||||||||||   |||||||| |||| |||||||  ||||||||||||||||||||| ||    
T  15957667 tttgttaaagggtga-aaaatgagtaatggatttttccggattttgtaattcggaaacttcgaaaaatagggcgtattacatgatgtttccggattaaat 15957765  T
Q  441 aatccggaaaccccctaaacac 462  Q
    ||||||||||||||||||||||    
T  15957766 aatccggaaaccccctaaacac 15957787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 247 - 462
Target Start/End: Complemental strand, 4065024 - 4064803
Alignment:
Q  247 ttacttttcccaccctgtggatttcctcgcgcaccctatttttt------ccaaaatgcccttaagtttttggattttataattcagaatggggttttct 340  Q
    ||||||||||||||| |||| ||||||||||| |||||||||||      | ||||||||||| |||||  |||||| ||||| | |||||| ||||||     
T  4065024 ttacttttcccacccagtgggtttcctcgcgcgccctattttttttcttccaaaaatgcccttgagtttccggatttcataatccggaatggtgttttcc 4064925  T
Q  341 tttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacat 440  Q
    |||||||  |||||| |||  |||| |||| |||||||||||| |||||||  ||||||| ||||| ||||||| |||| ||||||||||||||||||||    
T  4064924 tttgttatagggtgaaaaatggagttacgggtttttccggattatgtaatccggaaactttaaaaaatagggcgtgttagatgatgtttccggattacat 4064825  T
Q  441 aatccggaaaccccctaaacac 462  Q
    ||||||||||||||||||||||    
T  4064824 aatccggaaaccccctaaacac 4064803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 311 - 462
Target Start/End: Complemental strand, 28083612 - 28083461
Alignment:
Q  311 tggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtag 410  Q
    |||||| |||||| | |||||  ||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||  |||| |||||||| |||    
T  28083612 tggattatataatccggaatgatgttttcttttgttaaagggtgagaaaatgagtaacgggtttttccggattttgtaatccggaaaattcaaaaaatag 28083513  T
Q  411 ggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||||| ||||||||| ||||||||||||||||||||||||||| ||||||||    
T  28083512 ggcgcattacatgatatttccggattacataatccggaaaccctctaaacac 28083461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 312 - 462
Target Start/End: Original strand, 6156619 - 6156769
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    |||||| ||||| | |||||| |||||| |||||||   ||||| |||  |||| |||| ||||||||||||||||||||  ||||||||||||| ||||    
T  6156619 ggatttcataatccggaatggtgttttcctttgttatatggtgaaaaatggagttacgggtttttccggattttgtaatccggaaacttcaaaaaatagg 6156718  T
Q  412 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6156719 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 6156769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 313 - 461
Target Start/End: Complemental strand, 40620222 - 40620074
Alignment:
Q  313 gattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtaggg 412  Q
    |||| |||||| || ||||  |||||||||||||   |||||| |||||||||||| ||||||||||||||||||||||  ||||||||||||| |||||    
T  40620222 gattatataatccataatgatgttttcttttgttgaagggtgaaaaaatgagtaacagatttttccggattttgtaatccggaaacttcaaaaaataggg 40620123  T
Q  413 cgcgttacatgatgtttccggattacataatccggaaaccccctaaaca 461  Q
    | ||||| ||||||||| |||||||||||||||||||||||||||||||    
T  40620122 cacgttatatgatgttttcggattacataatccggaaaccccctaaaca 40620074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 312 - 462
Target Start/End: Original strand, 15799113 - 15799263
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    |||||| ||||| | ||||||  ||||| |||||||  |||||| |||  |||| |||| ||||||||||||||||||||  ||||||||||||| ||||    
T  15799113 ggatttcataatccggaatggtattttcctttgttatagggtgaaaaatggagttacgggtttttccggattttgtaatccggaaacttcaaaaaatagg 15799212  T
Q  412 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15799213 gcgcgttacatgatgtttccggattacataatccgaaaaccccctaaacac 15799263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 247 - 462
Target Start/End: Original strand, 33487425 - 33487648
Alignment:
Q  247 ttacttttcccaccctgtggatttcctcgcgcaccctatttttt--------ccaaaatgcccttaagtttttggattttataattcagaatggggtttt 338  Q
    |||||||||||||||||||| ||||||||||| |||||||||||        | |||||| |||| |||||  |||||| ||||| | |||||| |||||    
T  33487425 ttacttttcccaccctgtgggtttcctcgcgcgccctatttttttttttcttcaaaaatgtccttgagtttccggatttcataatccggaatggtgtttt 33487524  T
Q  339 cttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattac 438  Q
    | |||||||  |||||| |||  |||| |||| |||||||| |||||||||||   |||||||||||| |||||||||||| ||||||||| ||| ||||    
T  33487525 cctttgttacagggtgaaaaatggagttacgggtttttccgaattttgtaatccgaaaacttcaaaaaatagggcgcgttatatgatgttttcgggttac 33487624  T
Q  439 ataatccggaaaccccctaaacac 462  Q
    ||||||||||||| ||||||||||    
T  33487625 ataatccggaaactccctaaacac 33487648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 334 - 462
Target Start/End: Complemental strand, 37183993 - 37183865
Alignment:
Q  334 gttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccgg 433  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||  ||||||||||||| ||||||||||||| |||||| ||||||||||| ||| | |    
T  37183993 gttttcttttgttaacgggtgaaaaaatgagtaacagatttttctagattttgtaatcttgaaacttcaaaaaatagggcacgttacatgatattttcag 37183894  T
Q  434 attacataatccggaaaccccctaaacac 462  Q
    |||||||||||||||||||| ||||||||    
T  37183893 attacataatccggaaaccctctaaacac 37183865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 334 - 462
Target Start/End: Original strand, 39524686 - 39524814
Alignment:
Q  334 gttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccgg 433  Q
    ||||||||||||||  |||||| |||||||| || |||||||||||||||||||||||  ||||||| ||||| ||||||| |||||||||||||| |||    
T  39524686 gttttcttttgttaaagggtgaaaaaatgagcaatggatttttccggattttgtaatccggaaacttaaaaaaatagggcgtgttacatgatgttttcgg 39524785  T
Q  434 attacataatccggaaaccccctaaacac 462  Q
    |||||||||| ||||||||||||||||||    
T  39524786 attacataattcggaaaccccctaaacac 39524814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 336 - 459
Target Start/End: Original strand, 38372221 - 38372344
Alignment:
Q  336 tttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggat 435  Q
    ||||||||||||  |||||| ||||||||||||||||||||| |||||||||||||  ||||||| ||||| ||||||| ||||||||||||||||||||    
T  38372221 tttcttttgttaaagggtgaaaaaatgagtaacggatttttctggattttgtaatccggaaacttaaaaaaatagggcgggttacatgatgtttccggat 38372320  T
Q  436 tacataatccggaaaccccctaaa 459  Q
    |||||||| |||||||||| ||||    
T  38372321 tacataattcggaaaccccttaaa 38372344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 312 - 462
Target Start/End: Original strand, 26319006 - 26319155
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    |||||| ||||||| |||||| |||||| |||||||  |||||| |||  |||| ||||||||||||||||||||| |||  |||||||| |||| ||||    
T  26319006 ggatttcataattcggaatggtgttttcctttgttatagggtgaaaaatggagttacggatttttccggattttgttatccggaaacttccaaaa-tagg 26319104  T
Q  412 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    | ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26319105 gtgcgttacatgatgtttccggattacataatccgaaaaccccctaaacac 26319155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 327 - 462
Target Start/End: Complemental strand, 26190516 - 26190381
Alignment:
Q  327 gaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatg 426  Q
    |||||| |||||| ||| ||| ||||||| |||  |||| |||||||||||||||||||||||||  ||||||||||||| ||||| |||||||||||||    
T  26190516 gaatggtgttttcctttcttatcgggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaaatagggtgcgttacatgatg 26190417  T
Q  427 tttccggattacataatccggaaaccccctaaacac 462  Q
    ||| ||||||||||||| | ||||||||||||||||    
T  26190416 ttttcggattacataattcagaaaccccctaaacac 26190381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 312 - 454
Target Start/End: Complemental strand, 38693016 - 38692873
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggattttt-ccggattttgtaatctagaaacttcaaaaagtag 410  Q
    ||||| |||||| | |||||  ||||||||||||||  |||||| |||||||||||||| ||||| ||| |||||||||||  ||||||| ||||| |||    
T  38693016 ggattatataatccggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacgggttttttccgaattttgtaatccggaaacttaaaaaaatag 38692917  T
Q  411 ggcgcgttacatgatgtttccggattacataatccggaaacccc 454  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  38692916 ggcgcgttacgtgatgtttccggattacataatccggaaacccc 38692873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 285 - 462
Target Start/End: Complemental strand, 36359847 - 36359669
Alignment:
Q  285 ttttttccaaaatgcccttaagttttt-ggattttataattcagaatggg-gttttcttttgttagcgggtgagaaaatgagtaacggatttttccggat 382  Q
    ||||||| ||||||| |||||| |||  |||||| |||||   ||||||| ||||||||||||||  |||||| ||||||||| ||||| |||| |||||    
T  36359847 ttttttcaaaaatgctcttaaggtttccggatttcataatctggaatgggtgttttcttttgttaaagggtga-aaaatgagttacggaatttttcggat 36359749  T
Q  383 tttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||||||||| |||||  ||||||| |||| ||||| ||||||| ||| |||||||||||||| | |||||||||||||||    
T  36359748 tttgtaatccagaaatctcaaaaaataggacgcgtaacatgattttttcggattacataatctgaaaaccccctaaacac 36359669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 362 - 454
Target Start/End: Complemental strand, 12465289 - 12465200
Alignment:
Q  362 gagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaacccc 454  Q
    |||| |||||||||||||||||||||||||  ||||||||||||| ||||||| ||||||||||||||||||||||   ||||||||||||||    
T  12465289 gagttacggatttttccggattttgtaatccggaaacttcaaaaaatagggcgtgttacatgatgtttccggatta---aatccggaaacccc 12465200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 312 - 422
Target Start/End: Complemental strand, 31929338 - 31929229
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    ||||| |||||| | |||||  ||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||    
T  31929338 ggattatataatccggaatgatgttttcttttgttaaagggtga-aaaatgagtaacggatttttccggattttgtaatccagaaatttcaaaaaatagg 31929240  T
Q  412 gcgcgttacat 422  Q
    |||| ||||||    
T  31929239 gcgcattacat 31929229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 242 - 446
Target Start/End: Original strand, 38640536 - 38640744
Alignment:
Q  242 gggatttacttttcccaccctgtggatttcctcgcgcaccctattttttccaa-aatgccctt-aagtttttggattttataattcagaatggggttttc 339  Q
    ||||||||||||| ||| ||| ||  |||||| |||||||||||||||||||| ||||||||| ||||||  ||||||||||||   |||||| ||||||    
T  38640536 gggatttactttttccagcctatgactttccttgcgcaccctattttttccaataatgcccttgaagtttccggattttataatctggaatggtgttttc 38640635  T
Q  340 ttttgttagcgggtgagaaaa--tgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggatta 437  Q
     |||||||  |||||| ||||  ||||  || ||  ||| |||||||| |||||| ||||  ||||||| |||||||||||| ||||| | | |||||||    
T  38640636 ctttgttaaagggtgaaaaaaaatgagctacagagattttcggattttataatctggaaatctcaaaaaatagggcgcgttaaatgatttattcggatta 38640735  T
Q  438 cataatccg 446  Q
    |||||||||    
T  38640736 cataatccg 38640744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 378 - 462
Target Start/End: Original strand, 14111851 - 14111935
Alignment:
Q  378 cggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||  ||||||||||||| | ||| |||||||||||    
T  14111851 cggattttgtaatccagaaacttcaaaaaatagggcgcgttacatgatgtttttggattacataatctgaaaatcccctaaacac 14111935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 395 - 462
Target Start/End: Original strand, 29862583 - 29862650
Alignment:
Q  395 aaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  29862583 aaacttcaaaaaatagggcgcgttaggtgatgtttccggattacataatccggaaaccccctaaacac 29862650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 370 - 462
Target Start/End: Original strand, 8032217 - 8032309
Alignment:
Q  370 gatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||||||| ||||||||||||||| |||| |||||||| |||||| | ||||||||| |||||||||||||||||||| | ||| |||||||||    
T  8032217 gattttttcggattttgtaatctggaaatttcaaaaaatagggcacattacatgatttttccggattacataatccgaacacctcctaaacac 8032309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 395 - 462
Target Start/End: Complemental strand, 31221489 - 31221422
Alignment:
Q  395 aaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||||||| || |||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  31221489 aaacttcaaaaaatatggcgcgttacatgatgtttctggattacataatccggaaaccctctaaacac 31221422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 288 - 453
Target Start/End: Complemental strand, 37095171 - 37095007
Alignment:
Q  288 tttccaaaatgcccttaagtttttggatttt-ataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttg 386  Q
    |||| ||||||||||| || |||| || ||| ||||| | |||||| |||| |||| ||||  |||||| |||  |||| ||||||||||||||||||||    
T  37095171 tttcaaaaatgcccttgaggttttcgaatttcataatccggaatggtgtttccttt-gttatagggtgaaaaatggagttacggatttttccggattttg 37095073  T
Q  387 taatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccc 453  Q
    |||||   |||||| ||||| || ||||||||||||||||||||||||||||  |||||| ||||||    
T  37095072 taatccgaaaacttaaaaaa-taaggcgcgttacatgatgtttccggattaccaaatccgaaaaccc 37095007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 378 - 462
Target Start/End: Original strand, 34440688 - 34440771
Alignment:
Q  378 cggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||||||||||||||   |||||||||||| |||| ||||||||||||||||| |||||| ||||||||| |||||||||||||||    
T  34440688 cggattttgtaatccgaaaacttcaaaaa-taggacgcgttacatgatgttttcggattgcataatccgaaaaccccctaaacac 34440771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 368 - 462
Target Start/End: Complemental strand, 32842149 - 32842055
Alignment:
Q  368 cggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||||||||||||||||||||||||  ||||||||||||| ||||||||| || || || ||||  |||||||||||||| | ||||| |||||||    
T  32842149 cggatttttccggattttgtaatccggaaacttcaaaaaatagggcgcgctagataatttttcaagattacataatccgaacaccccataaacac 32842055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 334 - 442
Target Start/End: Original strand, 27212618 - 27212726
Alignment:
Q  334 gttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccgg 433  Q
    |||||| |||||||  |||||| ||||||||| |||| ||||| ||||||||||||||   |||  ||||||| ||||| |||||||||||| ||| |||    
T  27212618 gttttcctttgttatagggtgaaaaaatgagttacgggttttttcggattttgtaatccgaaaatctcaaaaaatagggtgcgttacatgattttttcgg 27212717  T
Q  434 attacataa 442  Q
    |||||||||    
T  27212718 attacataa 27212726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 464
Target Start/End: Original strand, 26095035 - 26095131
Alignment:
Q  368 cggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacactc 464  Q
    ||||||||| | |||||||||||| | ||||  |||||| ||| |||||||||||  | ||| |||||||||||||||| | ||||| |||||||||    
T  26095035 cggattttttctgattttgtaatccaaaaaccacaaaaaatagagcgcgttacatatttttttcggattacataatccgaacaccccataaacactc 26095131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 391
Target Start/End: Original strand, 28108271 - 28108348
Alignment:
Q  313 gattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatc 391  Q
    |||| |||||| | |||||  ||||||||||||||  || |||||||||||||||||| ||||||| ||||||||||||    
T  28108271 gattatataatccggaatgatgttttcttttgttaaagg-tgagaaaatgagtaacgggtttttccagattttgtaatc 28108348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 247 - 292
Target Start/End: Original strand, 29359529 - 29359574
Alignment:
Q  247 ttacttttcccaccctgtggatttcctcgcgcaccctattttttcc 292  Q
    |||||||||||||||| ||  |||||||||||||||||||||||||    
T  29359529 ttacttttcccaccctatgactttcctcgcgcaccctattttttcc 29359574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 425
Target Start/End: Original strand, 34529976 - 34530029
Alignment:
Q  372 tttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgat 425  Q
    ||||| |||||||||||||| | |||| ||||||| ||||||| ||||||||||    
T  34529976 ttttttcggattttgtaatccaaaaacctcaaaaaatagggcgtgttacatgat 34530029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 292
Target Start/End: Complemental strand, 35336246 - 35336201
Alignment:
Q  247 ttacttttcccaccctgtggatttcctcgcgcaccctattttttcc 292  Q
    |||||||||||||||| ||  ||||||||||| |||||||||||||    
T  35336246 ttacttttcccaccctatgtctttcctcgcgcgccctattttttcc 35336201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 462
Target Start/End: Complemental strand, 31929235 - 31929207
Alignment:
Q  434 attacataatccggaaaccccctaaacac 462  Q
    |||||||||||||||||||||||||||||    
T  31929235 attacataatccggaaaccccctaaacac 31929207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 4e-55; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 247 - 462
Target Start/End: Complemental strand, 15995410 - 15995191
Alignment:
Q  247 ttacttttcccaccctgtggatttcctcgcgcaccctattttttcc---aaaatgcccttaagtttttggattttataattcagaatggggttttctttt 343  Q
    |||||||| |||||||| || ||||||| ||| | ||||||||||    ||||||||||| |||||| |||||||||||| | |||||| ||||||||||    
T  15995410 ttactttttccaccctgcgggtttcctcacgcgctctattttttctccaaaaatgccctttagttttcggattttataatccggaatggtgttttctttt 15995311  T
Q  344 gttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttca-aaaagtagggcgcgttacatgatgtttccggattacataa 442  Q
    ||||  |||||| ||||| |||||||| ||||||||||||||||||||  ||||||||| |||| ||||||||||| |||||||||||||||||||||||    
T  15995310 gttaaagggtgaaaaaattagtaacgggtttttccggattttgtaatcgggaaacttcaaaaaaatagggcgcgttgcatgatgtttccggattacataa 15995211  T
Q  443 tccggaaaccccctaaacac 462  Q
    |||| |||||||||||||||    
T  15995210 tccgaaaaccccctaaacac 15995191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 312 - 462
Target Start/End: Complemental strand, 45154019 - 45153869
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    ||||| |||||| | |||||  ||||||||||||||  |||||| |||||||||||||| |||||| | |||||||||||| ||||||||||||| ||||    
T  45154019 ggattatataatccggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacgggtttttctgaattttgtaatctggaaacttcaaaaaatagg 45153920  T
Q  412 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45153919 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 45153869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 242 - 454
Target Start/End: Complemental strand, 25218095 - 25217876
Alignment:
Q  242 gggatttacttttcccaccctgtggatttcctcgcgcaccctatttttt-------ccaaaatgcccttaagtttttggattttataattcagaatgggg 334  Q
    |||| |||||||||||||| | ||| ||||||||||| |||||||||||       | |||||  | || ||||| ||||||||||||| |  ||||  |    
T  25218095 gggaattacttttcccaccatctgggtttcctcgcgcgccctatttttttttcttccaaaaatatctttgagtttctggattttataatccgcaatgatg 25217996  T
Q  335 ttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccgga 434  Q
    |||||||||||||  |||||| |||||||||||||||||||| ||||||||||||||  ||||||||||||| ||||| |||||||||||||||||||||    
T  25217995 ttttcttttgttaaagggtgaaaaaatgagtaacggattttttcggattttgtaatccggaaacttcaaaaaatagggtgcgttacatgatgtttccgga 25217896  T
Q  435 ttacataatccggaaacccc 454  Q
    ||||||||||||||||||||    
T  25217895 ttacataatccggaaacccc 25217876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 334 - 462
Target Start/End: Complemental strand, 17475005 - 17474877
Alignment:
Q  334 gttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccgg 433  Q
    ||||||||||||||   ||||| |||||||||||||||||||||||||||||||||||  ||||||| ||||| ||||||||||||||||||||||||||    
T  17475005 gttttcttttgttaaaaggtgaaaaaatgagtaacggatttttccggattttgtaatccggaaactttaaaaaatagggcgcgttacatgatgtttccgg 17474906  T
Q  434 attacataatccggaaaccccctaaacac 462  Q
    |||||||||||||||||||||||||||||    
T  17474905 attacataatccggaaaccccctaaacac 17474877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 312 - 462
Target Start/End: Complemental strand, 44465956 - 44465805
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    ||||| |||||| |||||||  ||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||| ||||    
T  44465956 ggattatataatccagaatgatgttttcttttgttaaagggtgaaaaaatgagtaacggatttttccggattttgtaatccggaaacttcaaaaaatagg 44465857  T
Q  412 gcgcgttacatgat-gtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||||||||| ||||  |||||||||| ||||||||||||||||||||    
T  44465856 gcgcgttacatgatagtttatggattacatactccggaaaccccctaaacac 44465805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 313 - 462
Target Start/End: Complemental strand, 36949172 - 36949023
Alignment:
Q  313 gattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtaggg 412  Q
    ||||| ||||| | |||||| |||||| |||||||  |||||| |||  |||| ||||||||||||||||||||||||||  |||||||||||| |||||    
T  36949172 gatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacggatttttccggattttgtaatctgcaaacttcaaaaaataggg 36949073  T
Q  413 cgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36949072 cgcgttacatgatgttttcggattacataatccggaaaccccctaaacac 36949023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 312 - 462
Target Start/End: Complemental strand, 32188098 - 32187947
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaa-tgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtag 410  Q
    ||||| |||||| | |||||  ||||||||||||||  |||||| |||| |||||||||| |||||| |||||||||||||| ||||||||||||| |||    
T  32188098 ggattgtataatccggaatgatgttttcttttgttaaagggtgaaaaaaatgagtaacgggtttttctggattttgtaatctggaaacttcaaaaaatag 32187999  T
Q  411 ggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  32187998 ggcgagttacatgatgtttccggattacataatccggaaacccccgaaacac 32187947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 334 - 462
Target Start/End: Complemental strand, 33452649 - 33452521
Alignment:
Q  334 gttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccgg 433  Q
    ||||||||||||||  |||||  ||||||||||||||||||||| ||||||||||||   ||||||||||||| ||||||||||||||||||||||||||    
T  33452649 gttttcttttgttaaagggtggaaaaatgagtaacggatttttctggattttgtaattcggaaacttcaaaaaatagggcgcgttacatgatgtttccgg 33452550  T
Q  434 attacataatccggaaaccccctaaacac 462  Q
    || ||||||||||||||| ||||||||||    
T  33452549 atcacataatccggaaactccctaaacac 33452521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 334 - 462
Target Start/End: Original strand, 39447110 - 39447238
Alignment:
Q  334 gttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccgg 433  Q
    ||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||   |||||||||||| |||||||| ||||||||||||| |||    
T  39447110 gttttcttttgttaaagggtgaaaaaatgagtaacggatttttccggattttgtaatccgaaaacttcaaaaaatagggcgcattacatgatgttttcgg 39447209  T
Q  434 attacataatccggaaaccccctaaacac 462  Q
    ||||||||||| ||||||||| |||||||    
T  39447210 attacataatctggaaaccccataaacac 39447238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 328 - 462
Target Start/End: Complemental strand, 41510641 - 41510506
Alignment:
Q  328 aatggggttttcttttgttagcgggtgagaaaa-tgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatg 426  Q
    ||||| |||||||||||| |  |||||| |||| |||||||||||||||||| ||||| ||||||  ||||||||||||| |||||||||||||||||||    
T  41510641 aatggtgttttcttttgtaaaagggtgaaaaaaatgagtaacggatttttccagatttcgtaatccggaaacttcaaaaaatagggcgcgttacatgatg 41510542  T
Q  427 tttccggattacataatccggaaaccccctaaacac 462  Q
    |||| ||||||||||||| |||||||||||||||||    
T  41510541 tttctggattacataatctggaaaccccctaaacac 41510506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 362 - 462
Target Start/End: Complemental strand, 4268416 - 4268316
Alignment:
Q  362 gagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaaca 461  Q
    |||||| || ||||| |||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4268416 gagtaatgggttttttcggattttgtaatccaaaaacttcaaaaaatagggcgcgttacatgatgtttccggattacataatccggaaaccccataaaca 4268317  T
Q  462 c 462  Q
    |    
T  4268316 c 4268316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 378 - 462
Target Start/End: Original strand, 36874977 - 36875061
Alignment:
Q  378 cggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||||||||||||||  ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| || |||||    
T  36874977 cggattttgtaatccggaaacttcaaaaaataggacgcgttacatgatgtttccggattacataatccggaaaccctctgaacac 36875061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 378 - 462
Target Start/End: Complemental strand, 41855061 - 41854977
Alignment:
Q  378 cggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||||||||||||||  ||||||||||||| ||||| | ||||||||||||||||||||||||| |||||||||||||||||||||    
T  41855061 cggattttgtaatccggaaacttcaaaaaatagggtgtgttacatgatgtttccggattacatgatccggaaaccccctaaacac 41854977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 394 - 462
Target Start/End: Original strand, 42894385 - 42894453
Alignment:
Q  394 gaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42894385 gaaacttaaaaaaataggacgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 42894453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 244 - 446
Target Start/End: Original strand, 25715219 - 25715425
Alignment:
Q  244 gatttacttttcccaccctgtggatttcctcgcgcaccctattttttccaaaa-tgccctt-aagtttttggattttataattcagaatggggttttctt 341  Q
    |||||| |||||||||||| ||  ||||||  ||| ||||||||||| ||||| ||||||| ||||||  |||||||||||| | |||||| |||||| |    
T  25715219 gatttatttttcccaccctatgtctttcctaacgcgccctatttttttcaaaaatgcccttgaagtttccggattttataatccggaatggtgttttcct 25715318  T
Q  342 ttgttagcgggtgagaaaatgagtaacggatttttc--cggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattaca 439  Q
    ||||||  |||||| ||||||||| ||  ||||||   |||| ||||||||| | |||  ||||||  ||||||||||||| |||| ||| |||||||||    
T  25715319 ttgttaaagggtgaaaaaatgagttacaaattttttttcggactttgtaatccaaaaatctcaaaagatagggcgcgttacctgattttttcggattaca 25715418  T
Q  440 taatccg 446  Q
    |||||||    
T  25715419 taatccg 25715425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 334 - 462
Target Start/End: Original strand, 34517049 - 34517176
Alignment:
Q  334 gttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccgg 433  Q
    |||||| |||||||   ||||| ||||||||| ||| |||||| |||||||||||||| | |||  ||||||| |||||||||||||||||| ||| |||    
T  34517049 gttttcctttgttatacggtgaaaaaatgagttacgaattttttcggattttgtaatcgaaaaatctcaaaaaatagggcgcgttacatgat-ttttcgg 34517147  T
Q  434 attacataatccggaaaccccctaaacac 462  Q
    ||||||||||||  | ||||| |||||||    
T  34517148 attacataatccaaataccccttaaacac 34517176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 238 - 462
Target Start/End: Original strand, 5507264 - 5507494
Alignment:
Q  238 tttagggatttacttttcccaccctgtggatttcctcgcgcaccctatttt----ttccaaaatgccctt-aagtttttggattttataattcagaatgg 332  Q
    |||||||| ||| |||||||||||| || | ||| |||||| |||||||||    ||| ||||||||||| ||||||| || ||| ||||| |  | | |    
T  5507264 tttagggaattatttttcccaccctatgaaattc-tcgcgcgccctattttctttttcaaaaatgcccttgaagttttcgggtttcataatccgaactag 5507362  T
Q  333 ggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatga--tgtttc 430  Q
     |||||| |||||||   ||||| ||||||||| || ||||||| || ||||||||||| | |||||||||||| || | ||||||||||||  | |||     
T  5507363 tgttttcctttgttatatggtgaaaaaatgagttacagattttttcgaattttgtaatccaaaaacttcaaaaaataagacgcgttacatgatttttttt 5507462  T
Q  431 cggattacataatccggaaaccccctaaacac 462  Q
    ||||||| |||||||| | |||||||||||||    
T  5507463 cggattatataatccgaacaccccctaaacac 5507494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 462
Target Start/End: Original strand, 33366920 - 33367003
Alignment:
Q  378 cggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||||||||||||||   |||||||||||| || | ||||||||||||| |||||||||||||||||||| ||||||||| |||||    
T  33366920 cggattttgtaatccgaaaacttcaaaaa-taagacgcgttacatgatatttccggattacataatccgaaaacccccttaacac 33367003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 285 - 446
Target Start/End: Complemental strand, 9847681 - 9847519
Alignment:
Q  285 ttttttccaaaatgccctt-aagtttttggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggatt 383  Q
    ||||||| |||||||| || ||||||  ||||||||||||   ||||||  ||||  |||||||  | |||| ||||||||| || ||||||||| ||||    
T  9847681 ttttttcaaaaatgcctttgaagtttccggattttataatctggaatggcatttttctttgttaaagagtgaaaaaatgagttactgatttttccagatt 9847582  T
Q  384 ttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccg 446  Q
    ||||||||   |||  ||||||| | |||||||||||||||| ||| || |||||||||||||    
T  9847581 ttgtaatccgaaaatctcaaaaaattgggcgcgttacatgattttttcgtattacataatccg 9847519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 462
Target Start/End: Complemental strand, 41203358 - 41203265
Alignment:
Q  368 cggatttttccggattttgtaatctagaaacttc-aaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||||||||||||||||||||||||  |||||| | ||||| ||||| ||  ||||| || |||| ||||||||||||||| | ||||| |||||||    
T  41203358 cggatttttccggattttgtaatccggaaactacaaaaaaatagggtgc--tacataatttttctggattacataatccgaacaccccgtaaacac 41203265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 41855117 - 41855054
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttt 375  Q
    ||||| |||||| | |||||| ||||||| ||||||  |||||| |||||||||||||||||||    
T  41855117 ggattatataatccggaatggtgttttctgttgttaaagggtgaaaaaatgagtaacggatttt 41855054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 292
Target Start/End: Complemental strand, 38209453 - 38209408
Alignment:
Q  247 ttacttttcccaccctgtggatttcctcgcgcaccctattttttcc 292  Q
    |||||||||||||||| ||  ||||||||||| |||||||||||||    
T  38209453 ttacttttcccaccctatgtctttcctcgcgcgccctattttttcc 38209408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 395 - 459
Target Start/End: Complemental strand, 38308939 - 38308875
Alignment:
Q  395 aaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaa 459  Q
    |||||||||||| ||||||||| ||  |||| ||||||||||| |||||||| | ||||| ||||    
T  38308939 aaacttcaaaaaatagggcgcgctatttgatttttccggattatataatccgaacaccccttaaa 38308875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 312 - 462
Target Start/End: Complemental strand, 54631696 - 54631546
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    ||||| |||||| | |||||  ||||||||||||||  |||||  |||||||||||||| ||||||||||||||||||||  |||||||||||||||| |    
T  54631696 ggattatataatccggaatgacgttttcttttgttaaagggtggaaaaatgagtaacgggtttttccggattttgtaatccggaaacttcaaaaagtatg 54631597  T
Q  412 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54631596 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 54631546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 247 - 462
Target Start/End: Complemental strand, 2506333 - 2506114
Alignment:
Q  247 ttacttttcccaccctgtggatttcctcgcgcaccctatt-ttttccaaaatgcccttaagtttttggattttataattcagaa--tggggttttctttt 343  Q
    |||||||| ||| ||| ||||||||||||||| ||||||| ||||| ||||||||||| |||||  |||||||||||| |||||  ||  ||||||||||    
T  2506333 ttactttttccatcctatggatttcctcgcgcgccctattgttttcaaaaatgcccttgagtttccggattttataat-cagaaaatgatgttttctttt 2506235  T
Q  344 gttagcgggtgagaaaa-tgagtaacggatttttccggattttgtaatctagaaacttcaaaaagta-gggcgcgttacatgatgtttccggattacata 441  Q
    ||||  |||||| |||| ||||||||||||||||||  ||||||| ||  |||||| ||||||| || ||||||||||||||||||||||||||||||||    
T  2506234 gttaaagggtgaaaaaaatgagtaacggatttttccaaattttgtgattcagaaacatcaaaaaataagggcgcgttacatgatgtttccggattacata 2506135  T
Q  442 atccggaaaccccctaaacac 462  Q
    |||||||||||||||||||||    
T  2506134 atccggaaaccccctaaacac 2506114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 247 - 462
Target Start/End: Complemental strand, 48319365 - 48319148
Alignment:
Q  247 ttacttttcccaccctgtggatttcctcgcgcaccctattttttccaaaatgccctt--aagttttt-ggattttataattcagaatggggttttctttt 343  Q
    |||||||||||||||| || |||||||||||| ||||||||||||||||||  || |  |||  ||  ||||| | |||| || ||||  ||||||||||    
T  48319365 ttacttttcccaccctatgtatttcctcgcgcgccctattttttccaaaattaccctcgaagcattccggattatttaatccacaatgatgttttctttt 48319266  T
Q  344 gttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataat 443  Q
    ||||  |||||| ||||||||| |||||||||||||||||| ||||||  ||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  48319265 gttaaagggtgaaaaaatgagtgacggatttttccggattt-gtaatccggaaacttcaaaaaatagggcgcgttacatgatgtttctggattacataat 48319167  T
Q  444 ccggaaaccccctaaacac 462  Q
    ||| |||||||||||||||    
T  48319166 ccgaaaaccccctaaacac 48319148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 285 - 462
Target Start/End: Original strand, 23523812 - 23523990
Alignment:
Q  285 ttttttccaaaatgcccttaagttttt-ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggatt 383  Q
    ||||||| ||||||||||| || |||| |||||| ||||||| |||||  |||||| |||||||| |||||| |||  |||| |||||||||| ||||||    
T  23523812 ttttttcaaaaatgcccttgagattttaggatttcataattcggaatgatgttttcctttgttagagggtgaaaaatggagttacggattttttcggatt 23523911  T
Q  384 ttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||||||||  ||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23523912 ttgtaatccggaaacttcaaaaaataggacgcgttacatgatgtttccggattacataatccagaaaccccctaaacac 23523990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 334 - 462
Target Start/End: Original strand, 7931614 - 7931742
Alignment:
Q  334 gttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccgg 433  Q
    ||||||||||||||  |||||| |||||||||||||| ||||||||||||||| ||||  ||||||||||||| ||||||||||||||| ||||||||||    
T  7931614 gttttcttttgttaaagggtgaaaaaatgagtaacgggtttttccggattttgcaatccggaaacttcaaaaaatagggcgcgttacattatgtttccgg 7931713  T
Q  434 attacataatccggaaaccccctaaacac 462  Q
    |||||||||||||||||||||||||||||    
T  7931714 attacataatccggaaaccccctaaacac 7931742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 312 - 462
Target Start/End: Original strand, 19835454 - 19835604
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    ||||| |||||| | |||||  ||||||||||||||  |||||| |||||||||||||| ||||||||||||||||||||  |||||||  |||| ||||    
T  19835454 ggattatataatccggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacgggtttttccggattttgtaatccggaaactttgaaaaatagg 19835553  T
Q  412 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19835554 gtgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 19835604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 247 - 462
Target Start/End: Complemental strand, 55052923 - 55052702
Alignment:
Q  247 ttacttttcccaccctgtggatttcctcgcgcaccctatttttt------ccaaaatgcccttaagtttttggattttataattcagaatggggttttct 340  Q
    ||||||||||||||| |||| ||||||||||| |||| ||||||      | ||||||||||| |||||  |||||| ||||| | |||||| ||||||     
T  55052923 ttacttttcccacccagtgggtttcctcgcgcgcccttttttttttcttccaaaaatgcccttgagtttccggatttcataatccggaatggtgttttcc 55052824  T
Q  341 tttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacat 440  Q
    |||||||  |||||| |||  |||| |||| |||||||||||| |||||||  ||||||||||||| ||||||| |||| ||||||||||||||||| ||    
T  55052823 tttgttatagggtgaaaaatggagttacgggtttttccggattatgtaatccggaaacttcaaaaaatagggcgtgttagatgatgtttccggattatat 55052724  T
Q  441 aatccggaaaccccctaaacac 462  Q
    ||||||||||||||||||||||    
T  55052723 aatccggaaaccccctaaacac 55052702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 334 - 462
Target Start/End: Complemental strand, 17933348 - 17933220
Alignment:
Q  334 gttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccgg 433  Q
    ||||||||||||||  |||||  ||||||| |||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  17933348 gttttcttttgttaaagggtgcaaaaatgaataacggatttttccagattttgtaatccagaaacttcaaaaaatagggcgcgttacatgatgtttccgg 17933249  T
Q  434 attacataatccggaaaccccctaaacac 462  Q
    ||||||||||| ||||||||| |||||||    
T  17933248 attacataatctggaaaccccttaaacac 17933220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 334 - 462
Target Start/End: Complemental strand, 25491606 - 25491478
Alignment:
Q  334 gttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccgg 433  Q
    ||||||||||||||  |||||| |||||||||||||  ||||| ||||||||||||||  ||||||||||||| |||| |||||||||||||||||||||    
T  25491606 gttttcttttgttaaagggtgaaaaaatgagtaacgagttttttcggattttgtaatccggaaacttcaaaaaataggacgcgttacatgatgtttccgg 25491507  T
Q  434 attacataatccggaaaccccctaaacac 462  Q
    |||||||||||||||||||||||||||||    
T  25491506 attacataatccggaaaccccctaaacac 25491478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 247 - 462
Target Start/End: Original strand, 38536036 - 38536254
Alignment:
Q  247 ttacttttcccaccctgtggatttcctcgcgcaccctatttttt----ccaaaatgcccttaagtttttggattttataattcagaatggggttttcttt 342  Q
    |||||||||| ||||||||| ||||||||||| |||||||||||    | |||||||||||   |||  |||||| ||||| |  ||||| |||||| ||    
T  38536036 ttacttttcc-accctgtgggtttcctcgcgcgccctatttttttttccaaaaatgcccttgcatttccggatttcataatccgaaatggtgttttcctt 38536134  T
Q  343 tgttagcgggtgagaaaatga-gtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacata 441  Q
    |||||  |||||| ||||||| || |||| |||||||||||||||||||   ||||||||||||| ||||||| |||||||||||||||| |||||||||    
T  38536135 tgttatagggtga-aaaatgaagttacgggtttttccggattttgtaattcggaaacttcaaaaaatagggcgtgttacatgatgtttccagattacata 38536233  T
Q  442 atccggaaaccccctaaacac 462  Q
    |||||||||||||||||||||    
T  38536234 atccggaaaccccctaaacac 38536254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 247 - 463
Target Start/End: Complemental strand, 25539251 - 25539030
Alignment:
Q  247 ttacttttcccaccctgtggatttcctcgcgcaccctatttttt-----ccaaaatgcccttaagtttttggattttataattcagaatggggttttctt 341  Q
    |||||||||||| | ||||| |||||||| || |||||||||||     | |||||| || | |||||  |||||| ||||| | |||||| |||||| |    
T  25539251 ttacttttcccagcatgtgggtttcctcgtgcgccctattttttttttccaaaaatgtccctgagtttccggatttcataatccggaatggtgttttcct 25539152  T
Q  342 ttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacata 441  Q
    ||||||   ||||| |||  |||| |||| ||||||||||||||||||||  ||||||||||||| ||||||  ||||||||||||||| ||||||||||    
T  25539151 ttgttatatggtgaaaaatggagttacgggtttttccggattttgtaatccggaaacttcaaaaaatagggcatgttacatgatgtttctggattacata 25539052  T
Q  442 atccggaaaccccctaaacact 463  Q
    ||||||||||||||||||||||    
T  25539051 atccggaaaccccctaaacact 25539030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 312 - 454
Target Start/End: Original strand, 32441745 - 32441887
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    |||||| ||||| | |||||| |||||| |||||||  |||||| |||  |||| | ||||||||| |||||||||||||  ||||||||||||| |||     
T  32441745 ggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttaaggatttttctggattttgtaatccggaaacttcaaaaaatagc 32441844  T
Q  412 gcgcgttacatgatgtttccggattacataatccggaaacccc 454  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  32441845 gcgcgttacatgatgtttccggattacataatccggaaacccc 32441887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 313 - 462
Target Start/End: Complemental strand, 46440507 - 46440357
Alignment:
Q  313 gattttataattcagaatggggttttcttttgttagcgggtgagaaaa-tgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    |||| |||||||| |||||  || |||||||||||  || ||| |||| ||| |||||| |||||||| ||||| |||||  ||||||| ||||| ||||    
T  46440507 gattatataattcggaatgatgtattcttttgttaaaggatgaaaaaaatgaataacgggtttttccgaattttataatccggaaacttaaaaaaatagg 46440408  T
Q  412 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46440407 acgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 46440357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 242 - 462
Target Start/End: Complemental strand, 25752751 - 25752527
Alignment:
Q  242 gggatttacttttcccaccctgtggatttcctcgcgcaccctat-tttttccaaaatgcccttaagtttttggattttataattcagaatg--gggtttt 338  Q
    ||||||||||||||  ||||| | | ||||||||||| ||| || |||||| |||||  | || |||||  |||||||||||| | |||||  |  ||||    
T  25752751 gggatttacttttcttaccctataggtttcctcgcgcgccccatctttttcaaaaatatcattgagtttccggattttataatccggaatgatgtttttt 25752652  T
Q  339 cttttgttagcgggtg-agaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggatta 437  Q
     ||||||||   |||| | ||||||||||| |||||||||||||||||||||||  |||| |||||||| |||||||| ||||||||||||||| |||||    
T  25752651 tttttgttaaaaggtgaaaaaaatgagtaatggatttttccggattttgtaatccggaaatttcaaaaaatagggcgcattacatgatgtttccagatta 25752552  T
Q  438 cataatccggaaaccccctaaacac 462  Q
    ||||||||| ||||||| |||||||    
T  25752551 cataatccgaaaaccccataaacac 25752527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 334 - 462
Target Start/End: Original strand, 40703619 - 40703748
Alignment:
Q  334 gttttcttttgttagcgggtgagaa-aatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccg 432  Q
    |||||||||| |||  |||||| || |||||||||||||||||||||||||||||||||  |||| |||||||| ||||| || ||||||||||||||||    
T  40703619 gttttctttttttaaagggtgaaaagaatgagtaacggatttttccggattttgtaatccggaaatttcaaaaaatagggtgcattacatgatgtttccg 40703718  T
Q  433 gattacataatccggaaaccccctaaacac 462  Q
    |||||||||| | | |||||||||||||||    
T  40703719 gattacataacctgaaaaccccctaaacac 40703748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 336 - 462
Target Start/End: Original strand, 29822577 - 29822703
Alignment:
Q  336 tttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggat 435  Q
    |||| |||||||  |||||| |||  |||| |||| ||||||||||||||||||||  ||||||||||||| ||  |||||||||||||||||| |||||    
T  29822577 tttcctttgttatagggtgaaaaatggagttacgggtttttccggattttgtaatccggaaacttcaaaaaatacagcgcgttacatgatgttttcggat 29822676  T
Q  436 tacataatccggaaaccccctaaacac 462  Q
    ||||||||||||||||||| |||||||    
T  29822677 tacataatccggaaaccccataaacac 29822703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 312 - 437
Target Start/End: Complemental strand, 6229044 - 6228919
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    |||||| ||||| | |||||| |||||| |||||||  |||||| |||  |||  ||||||||||||||||||||||| |  ||||||||||||| ||||    
T  6229044 ggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagctacggatttttccggattttgtaacccggaaacttcaaaaaatagg 6228945  T
Q  412 gcgcgttacatgatgtttccggatta 437  Q
    ||||||||||||||||||||||||||    
T  6228944 gcgcgttacatgatgtttccggatta 6228919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 334 - 462
Target Start/End: Complemental strand, 3703461 - 3703333
Alignment:
Q  334 gttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccgg 433  Q
    |||||| |||||||  |||||| ||||||||| |||||||||| ||||||||||||||   |||||||||||| |||| || |||||||||| ||| |||    
T  3703461 gttttcctttgttatagggtgaaaaaatgagttacggattttttcggattttgtaatccgaaaacttcaaaaaataggacgtgttacatgattttttcgg 3703362  T
Q  434 attacataatccggaaaccccctaaacac 462  Q
    |||||||||| || | |||||||||||||    
T  3703361 attacataattcgaacaccccctaaacac 3703333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 378 - 462
Target Start/End: Original strand, 34972864 - 34972948
Alignment:
Q  378 cggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||||||||||||||| ||||||| ||||| |||||||||||||||||||||| |||| ||||||||||| |||||||||||||||    
T  34972864 cggattttgtaatctggaaacttaaaaaaatagggcgcgttacatgatgttttcggactacataatccgaaaaccccctaaacac 34972948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 334 - 428
Target Start/End: Complemental strand, 53894202 - 53894108
Alignment:
Q  334 gttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtt 428  Q
    ||||||||||||||  |||||| ||||||| |||||| ||||||||||||||| ||||  ||||||||||||| |||||||||||||||||||||    
T  53894202 gttttcttttgttaaagggtgaaaaaatgactaacgggtttttccggattttgcaatcaggaaacttcaaaaaatagggcgcgttacatgatgtt 53894108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 306 - 462
Target Start/End: Complemental strand, 6003912 - 6003754
Alignment:
Q  306 gtttttggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaa 405  Q
    |||| ||||||| ||||| | |||||| | |||| |||||||  |||||| |||  |||| |||||||||| || ||||| |||||  ||||||| ||||    
T  6003912 gtttctggatttcataatccggaatggtggtttcctttgttatagggtgaaaaatggagttacggattttttcgaattttataatccggaaacttaaaaa 6003813  T
Q  406 agt--agggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |    || | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6003812 aaataagagtgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 6003754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 394 - 464
Target Start/End: Complemental strand, 41413250 - 41413181
Alignment:
Q  394 gaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacactc 464  Q
    ||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41413250 gaaacttcaaaaaatagga-gcgttacatgatgtttccggattacataatccggaaaccccctaaacactc 41413181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 373 - 462
Target Start/End: Original strand, 8106387 - 8106476
Alignment:
Q  373 ttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||||||||||||||   |||||||||||| ||||||||| |||||||| |||||| ||||||||||||| | |||||||||||||    
T  8106387 ttttccggattttgtaatccgaaaacttcaaaaaatagggcgcgctacatgatttttccgtattacataatccgaacaccccctaaacac 8106476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 334 - 463
Target Start/End: Original strand, 38416521 - 38416650
Alignment:
Q  334 gttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccgg 433  Q
    |||||| |||||||  |||||| |||||||||  ||||||||| |  |||||||||||  ||||| | ||||| |||||| ||||||||||| ||| |||    
T  38416521 gttttcctttgttatagggtgaaaaaatgagttgcggattttttcaaattttgtaatccggaaacataaaaaaatagggcacgttacatgattttttcgg 38416620  T
Q  434 attacataatccggaaaccccctaaacact 463  Q
    ||||||||||||| | ||||||||||||||    
T  38416621 attacataatccgaacaccccctaaacact 38416650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 312 - 461
Target Start/End: Original strand, 49396942 - 49397091
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    |||||| ||||| | |||||  |||||| ||| |||  |||||| |||  |||| |||||||||||||||||||||||||  ||||||||||||| ||||    
T  49396942 ggatttcataatccggaatgatgttttcctttattatagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaaatagg 49397041  T
Q  412 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaaca 461  Q
      |||||||| |||||||  ||||||||||||||| ||| ||| ||||||    
T  49397042 atgcgttacaagatgtttttggattacataatccgaaaatcccttaaaca 49397091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 408 - 462
Target Start/End: Complemental strand, 31582559 - 31582505
Alignment:
Q  408 tagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||| ||||||||||||| | ||||||||||||||||||||||||||||||    
T  31582559 tagggcgcattacatgatgttttctgattacataatccggaaaccccctaaacac 31582505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 244 - 373
Target Start/End: Complemental strand, 42660562 - 42660430
Alignment:
Q  244 gatttacttttcccaccctgtggatttcctcgcgcaccctat-tttttccaaaa-tgccctt-aagtttttggattttataattcagaatggggttttct 340  Q
    |||||||||||||||  || ||  ||||||||||| |||||| ||||||||||| | ||||| ||||||  |||||||||||| |||||| | ||||||     
T  42660562 gatttacttttcccattctatgcctttcctcgcgcgccctatatttttccaaaaatacccttgaagtttccggattttataatccagaatagtgttttcc 42660463  T
Q  341 tttgttagcgggtgagaaaatgagtaacggatt 373  Q
    |||||||  |||||| ||||||||| |||||||    
T  42660462 tttgttaaagggtgaaaaaatgagttacggatt 42660430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 357 - 425
Target Start/End: Complemental strand, 50392597 - 50392529
Alignment:
Q  357 aaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgat 425  Q
    ||||||||| |||||||||||||||||||||||||  ||||  ||||||| | ||||||||||||||||    
T  50392597 aaaatgagttacggatttttccggattttgtaatccggaaatctcaaaaaatggggcgcgttacatgat 50392529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 293
Target Start/End: Complemental strand, 4049257 - 4049211
Alignment:
Q  247 ttacttttcccaccctgtggatttcctcgcgcaccctattttttcca 293  Q
    |||||||||||||||| ||  ||||||||||| ||||||||||||||    
T  4049257 ttacttttcccaccctatgtctttcctcgcgcgccctattttttcca 4049211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 15541846 - 15541896
Alignment:
Q  244 gatttacttttcccaccctgtggatttcctcgcgcaccctattttttccaa 294  Q
    |||||||||||||||| || || |||||||| ||| |||||||||||||||    
T  15541846 gatttacttttcccacactatgcatttcctcacgctccctattttttccaa 15541896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 449
Target Start/End: Complemental strand, 35421353 - 35421325
Alignment:
Q  421 atgatgtttccggattacataatccggaa 449  Q
    |||||||||||||||||||||||||||||    
T  35421353 atgatgtttccggattacataatccggaa 35421325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 312 - 462
Target Start/End: Complemental strand, 47740165 - 47740015
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    ||||| |||||| | |||||  ||||||||||||||  |||||| |||||||| ||| ||||||||| ||||||||||||  ||||||||||||| ||||    
T  47740165 ggattatataatccggaatgatgttttcttttgttaaagggtgaaaaaatgagcaacagatttttccagattttgtaatccggaaacttcaaaaaatagg 47740066  T
Q  412 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47740065 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 47740015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 312 - 462
Target Start/End: Original strand, 35142003 - 35142150
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    ||||| |||||| | |||||| ||| ||||||||||  |||||| ||||   ||||||||||||||||| ||||||||||  ||||||||||||| ||||    
T  35142003 ggattatataatccggaatggtgttatcttttgttaaagggtgaaaaaa---gtaacggatttttccgggttttgtaatccggaaacttcaaaaattagg 35142099  T
Q  412 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35142100 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 35142150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 311 - 462
Target Start/End: Original strand, 39149735 - 39149885
Alignment:
Q  311 tggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtag 410  Q
    |||||| ||||||  ||||| | ||||||||||||||  |||||| ||||| || |||||||||||||||||||||||||| ||||||| |||||| |||    
T  39149735 tggattatataatctagaattgtgttttcttttgttaaagggtgaaaaaattagcaacggatttttccggattttgtaatccagaaact-caaaaaatag 39149833  T
Q  411 ggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  39149834 ggcgcgttacatagtgtttccggattacataatccggaaaccccctaaacac 39149885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 313 - 462
Target Start/End: Complemental strand, 51540848 - 51540697
Alignment:
Q  313 gattttataattcagaatggggttttcttttgttagcgggtgagaaaa--tgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtag 410  Q
    ||||||||||| |  ||||| ||||||||||||||  |||||| ||||  ||||||||||||||||| |||||||| ||||  ||||||||||||| |||    
T  51540848 gattttataatccgaaatggtgttttcttttgttaaagggtgaaaaaaaatgagtaacggatttttctggattttggaatccggaaacttcaaaaaatag 51540749  T
Q  411 ggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  51540748 ggcgcgttacatgatgtttccgaattacataatccggaaaccccttaaacac 51540697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 241 - 462
Target Start/End: Complemental strand, 3352372 - 3352149
Alignment:
Q  241 agggatttacttttcccaccctgtggatttcctcgcgcaccctattttttccaaaa-tgcccttaagtttttggattttataattcagaatggggttttc 339  Q
    ||||| |||| ||| ||| ||||| | ||||| || ||| |||||||||| ||||| |||| || | |||| |||||||||||| || ||||  |||||     
T  3352372 agggaattacattttccatcctgtaggtttccacgtgcatcctatttttttcaaaaatgcctttgaattttcggattttataatccaaaatgatgttttt 3352273  T
Q  340 ttttgttagcgggtgagaaaa-tgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattac 438  Q
    ||||||||  |||||| |||| ||||||||| ||||||||  |||||||||||  ||||||| ||||| ||||| |||||||||||||||||||||||||    
T  3352272 ttttgttaaagggtgaaaaaaatgagtaacgaatttttccaaattttgtaatcaggaaacttaaaaaaatagggtgcgttacatgatgtttccggattac 3352173  T
Q  439 ataatccggaaaccccctaaacac 462  Q
    ||||| ||||||||||||||||||    
T  3352172 ataattcggaaaccccctaaacac 3352149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 304 - 462
Target Start/End: Original strand, 47301937 - 47302095
Alignment:
Q  304 aagtttttggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaa 403  Q
    ||||||| |||||| ||||||| |||||| |||||| |||||||  |||||| |||  |||| | |||||||||||||||||||||||  ||||||| ||    
T  47301937 aagttttcggatttcataattcggaatggtgttttcctttgttatagggtgaaaaatggagttatggatttttccggattttgtaatccggaaacttaaa 47302036  T
Q  404 aaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||| || |||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  47302037 aaaataaggcgcgttacatgatgtttccggattacataatccgaaaacctcctaaacac 47302095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 327 - 462
Target Start/End: Complemental strand, 38977966 - 38977831
Alignment:
Q  327 gaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatg 426  Q
    |||||| ||||| ||||||||  |||||| ||||| |||||||||||||||  ||||||||||||  ||||||||||||| |||||||||||||||| ||    
T  38977966 gaatggtgttttattttgttaaagggtgaaaaaataagtaacggatttttctagattttgtaatccggaaacttcaaaaaatagggcgcgttacatggtg 38977867  T
Q  427 tttccggattacataatccggaaaccccctaaacac 462  Q
    |||  ||||||||||||||| |||||||||||||||    
T  38977866 ttttgggattacataatccgaaaaccccctaaacac 38977831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 313 - 451
Target Start/End: Complemental strand, 34821628 - 34821490
Alignment:
Q  313 gattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtaggg 412  Q
    |||| |||||| | |||||| ||||||||||||||  |||||| ||||||||||||||| |||||||||||||||||||  ||||||||||||| |||||    
T  34821628 gattatataatccggaatggtgttttcttttgttaaagggtgaaaaaatgagtaacggaattttccggattttgtaatccggaaacttcaaaaaataggg 34821529  T
Q  413 cgcgttacatgatgtttccggattacataatccggaaac 451  Q
    |||||||| ||||||||||| |||   ||||||||||||    
T  34821528 cgcgttacctgatgtttccgaattttgtaatccggaaac 34821490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 304 - 462
Target Start/End: Original strand, 51258321 - 51258478
Alignment:
Q  304 aagtttttggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaa 403  Q
    |||||| ||||||| ||||| | |||| | |||||| |||||||  |||||| ||||||||| ||||||||||||||||||||||||| | ||| |||||    
T  51258321 aagtttctggatttcataatccggaattgtgttttcctttgttaaagggtga-aaaatgagttacggatttttccggattttgtaatccataaatttcaa 51258419  T
Q  404 aaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||| ||||||||||||||| || ||| |||||||||||||||| | |||||||||||||    
T  51258420 aaaatagggcgcgttacataattttttcggattacataatccgaacaccccctaaacac 51258478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 285 - 462
Target Start/End: Original strand, 50716151 - 50716328
Alignment:
Q  285 ttttttccaaaatgcccttaagtttttggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattt 384  Q
    ||||||| || |||||||| |||||  | |||| ||||| | ||||||  ||||| |||||||  |||||| |||  |||| |||| ||||| |||||||    
T  50716151 ttttttcaaagatgcccttgagtttccgaatttcataatccggaatggtattttcctttgttatagggtgaaaaatggagttacgggttttttcggattt 50716250  T
Q  385 tgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||   |||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  50716251 tgtaatccgaaaacttcaaaaaatagggcgtgttacatgatgtttccagattacataatccggaaaccccctaaacac 50716328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 285 - 462
Target Start/End: Complemental strand, 50796696 - 50796519
Alignment:
Q  285 ttttttccaaaatgcccttaagtttttggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattt 384  Q
    ||||||| || |||||||| |||||  | |||| ||||| | ||||||  ||||| |||||||  |||||| |||  |||| |||| ||||| |||||||    
T  50796696 ttttttcaaagatgcccttgagtttccgaatttcataatccggaatggtattttcctttgttatagggtgaaaaatggagttacgggttttttcggattt 50796597  T
Q  385 tgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||   |||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  50796596 tgtaatccgaaaacttcaaaaaatagggcgtgttacatgatgtttccagattacataatccggaaaccccctaaacac 50796519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 334 - 462
Target Start/End: Complemental strand, 46622996 - 46622867
Alignment:
Q  334 gttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaat-ctagaaacttcaaaaagtagggcgcgttacatgatgtttccg 432  Q
    ||||||||||||||   | ||| ||||||||||||||||||||||||||||| |||  |  ||||||||||||| |||| | ||||||||||||||||||    
T  46622996 gttttcttttgttaaatgatgaaaaaatgagtaacggatttttccggattttataaaaccggaaacttcaaaaaataggacacgttacatgatgtttccg 46622897  T
Q  433 gattacataatccggaaaccccctaaacac 462  Q
    |||||||||||| |||||||||||||||||    
T  46622896 gattacataatctggaaaccccctaaacac 46622867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 285 - 456
Target Start/End: Original strand, 3937286 - 3937458
Alignment:
Q  285 ttttttccaaaatgcccttaagttttt-ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggatt 383  Q
    ||||||| ||||||||||| || |||  |||||||||||| |||||||| |||||| |||||||  || ||| |||  |||| |||  |||||||| |||    
T  3937286 ttttttcaaaaatgcccttgaggtttccggattttataatccagaatggtgttttcctttgttataggatgaaaaatggagttacgagtttttccgaatt 3937385  T
Q  384 ttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccct 456  Q
    ||||||||  ||||||||||||| ||||||||||||||||||||||| |||||||||||| || |||| ||||    
T  3937386 ttgtaatccggaaacttcaaaaaatagggcgcgttacatgatgtttctggattacataattcgaaaacaccct 3937458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 372 - 462
Target Start/End: Complemental strand, 501314 - 501223
Alignment:
Q  372 tttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccgg-aaaccccctaaacac 462  Q
    |||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  501314 tttttccggattttgtaatccaaaaacttcaaaaaatagggcgcgttacatgatgtttccggattgcataatccggaaaaccccctaaacac 501223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 312 - 462
Target Start/End: Complemental strand, 3903039 - 3902889
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    |||||| ||||| | |||||| |||||| |||||||  |||||| ||   |||| || | ||||||||||||||||||||   |||||||||||| |||     
T  3903039 ggatttcataatccggaatggtgttttcctttgttatagggtgaaaagtggagttactggtttttccggattttgtaatccgaaaacttcaaaaaataga 3902940  T
Q  412 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  3902939 gcgcgttacatgatgtttttggattacataatccggaaaccccctaaacac 3902889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 285 - 462
Target Start/End: Complemental strand, 2358885 - 2358705
Alignment:
Q  285 ttttttccaaaatgcccttaagttttt--ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggat 382  Q
    ||||||| ||||||||||| || |||   |||||| ||||| | |||||| |||||| |||||||  |||||| |||  |||| ||||||||| | ||||    
T  2358885 ttttttcaaaaatgcccttgaggtttcccggatttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacggattttcctggat 2358786  T
Q  383 tttgtaatctagaaacttcaaaaag-tagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||||  |||||||||||||  ||||||| |||||||||||||||||| ||||||||||||||||||| | ||||||    
T  2358785 tttgtaatccggaaacttcaaaaaaatagggcgtgttacatgatgtttccggcttacataatccggaaaccctccaaacac 2358705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 313 - 462
Target Start/End: Original strand, 48303918 - 48304067
Alignment:
Q  313 gattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtaggg 412  Q
    ||||| ||||| | |||||| |||||| |||||||  |||||| ||||||||| |||||||||||||||||||||||||  ||||  ||||||| |||||    
T  48303918 gatttcataatccggaatggtgttttcctttgttaaagggtgaaaaaatgagttacggatttttccggattttgtaatccggaaatctcaaaaaataggg 48304017  T
Q  413 cgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
     | |||||||||| ||| | |||||||||||||| ||||||||| |||||    
T  48304018 tgtgttacatgattttttcagattacataatccgaaaaccccctcaacac 48304067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 374 - 462
Target Start/End: Complemental strand, 34821514 - 34821426
Alignment:
Q  374 tttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||| |||||||||||  ||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34821514 tttccgaattttgtaatccggaaacttcaaaaaatagagcgcgttacatgatgttttcggattacataatccggaaaccccctaaacac 34821426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 241 - 444
Target Start/End: Original strand, 45244242 - 45244447
Alignment:
Q  241 agggatttacttttcccaccctgtggatttcctcgcgcaccctattttttccaaaa-tgccctt-aagtttttggattttataattcagaatggggtttt 338  Q
    |||||||||||||| ||||||| ||| ||| ||||||| ||||||||||| ||||| |  |||| ||||||| ||| || ||||| | |||| | |||||    
T  45244242 agggatttactttttccaccctatggtttttctcgcgcgccctatttttttcaaaaatatccttgaagttttcggaattaataatccggaattgtgtttt 45244341  T
Q  339 cttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaact-tcaaaaagtagggcgcgttacatgatgtttccggatta 437  Q
    | |||||||   | ||| ||||||||| | |||||||||||||||||||||| | |||| | ||||||| |||||||||||||||||| ||| |||||||    
T  45244342 cctttgttaaaagatgaaaaaatgagttatggatttttccggattttgtaat-tcgaaaatctcaaaaaatagggcgcgttacatgattttttcggatta 45244440  T
Q  438 cataatc 444  Q
    |||||||    
T  45244441 cataatc 45244447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 350 - 462
Target Start/End: Original strand, 33438486 - 33438597
Alignment:
Q  350 gggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaa 449  Q
    |||||| ||||| ||||||||||||||| | ||||||||||| | |||||||||||| ||||||||||||||||||| ||||||||||||||||  ||||    
T  33438486 gggtgaaaaaataagtaacggatttttctgaattttgtaatccaaaaacttcaaaaaatagggcgcgttacatgatg-ttccggattacataatgtggaa 33438584  T
Q  450 accccctaaacac 462  Q
    |||| | ||||||    
T  33438585 accctcaaaacac 33438597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 396 - 462
Target Start/End: Complemental strand, 43473118 - 43473052
Alignment:
Q  396 aacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||||||||||| || || || ||||||||||||||||||||||||||||||||||||||||||||||    
T  43473118 aacttcaaaaaatatggtgcattacatgatgtttccggattacataatccggaaaccccctaaacac 43473052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 334 - 415
Target Start/End: Original strand, 47123054 - 47123135
Alignment:
Q  334 gttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgc 415  Q
    ||||||||||||||  |||||| |||||||||||||| |||||||| |||||||||||  ||||||||||||| ||||||||    
T  47123054 gttttcttttgttaaagggtgaaaaaatgagtaacgggtttttccgaattttgtaatccggaaacttcaaaaaatagggcgc 47123135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 334 - 415
Target Start/End: Original strand, 47130420 - 47130501
Alignment:
Q  334 gttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgc 415  Q
    ||||||||||||||  |||||| |||||||||||||| |||||||| |||||||||||  ||||||||||||| ||||||||    
T  47130420 gttttcttttgttaaagggtgaaaaaatgagtaacgggtttttccgaattttgtaatccggaaacttcaaaaaatagggcgc 47130501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 378 - 462
Target Start/End: Original strand, 52777223 - 52777306
Alignment:
Q  378 cggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||||||||||||||  ||||||||||||| ||| || | |||||||||||||||||||||||||||  |||||||||||||||||    
T  52777223 cggattttgtaatccggaaacttcaaaaa-tagagcactttacatgatgtttccggattacataataaggaaaccccctaaacac 52777306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 292 - 462
Target Start/End: Original strand, 28872909 - 28873079
Alignment:
Q  292 caaaatgcccttaagtttttggattttataattcagaatggggttttcttttgttagcgggtgagaaaatga-gtaacggatttttccggattttgtaat 390  Q
    ||||||| |||| |||||| |||||| |||||   |||||  |||||  |||||||  |||||| ||||||| || |||  |||||| ||||||| ||||    
T  28872909 caaaatgtccttgagttttcggatttcataatctggaatgatgtttttctttgttatagggtga-aaaatgaagttacgagtttttctggattttataat 28873007  T
Q  391 ctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |   ||| |||||||| |||| |||||||||| ||||||||||||||||||||||   ||||||||||||||    
T  28873008 ccgaaaatttcaaaaaataggacgcgttacattatgtttccggattacataatccaacaaccccctaaacac 28873079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 357 - 461
Target Start/End: Complemental strand, 49096415 - 49096311
Alignment:
Q  357 aaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccct 456  Q
    ||||| ||| |||||||||||||||||||||||||  ||||  ||||||| || |||  |||||||||| ||| || ||||||||||||  | |||||||    
T  49096415 aaaataagttacggatttttccggattttgtaatccggaaatctcaaaaaatatggcatgttacatgattttttcgaattacataatccaaacaccccct 49096316  T
Q  457 aaaca 461  Q
    |||||    
T  49096315 aaaca 49096311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 402
Target Start/End: Original strand, 42936527 - 42936685
Alignment:
Q  246 tttacttttcccaccctgtggatttcctcgcgcaccctattttttcc-aaaatgccctt-aagtttttggattttataattcagaatggggttttctttt 343  Q
    ||||||||||| ||||| ||  ||||||||| |  ||||||||  || ||||| ||||| ||||||  |||||| ||||| | |||||| |||||| |||    
T  42936527 tttacttttccaaccctatgtctttcctcgcacgtcctattttcccccaaaatacccttgaagtttccggatttcataatccggaatggtgttttccttt 42936626  T
Q  344 gttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttca 402  Q
    ||||  |||||| |||| |||| |||||||||||| |||| |  |||| ||||||||||    
T  42936627 gttaaagggtgaaaaaaggagttacggatttttccagattataaaatccagaaacttca 42936685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 390
Target Start/End: Complemental strand, 28830329 - 28830247
Alignment:
Q  308 ttttggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaat 390  Q
    |||||||||||||||||   ||||| ||||| ||||||||  |||||| ||||||| | | ||||||||  ||||||||||||    
T  28830329 ttttggattttataatttgaaatggtgtttttttttgttaaagggtgaaaaaatgaattatggatttttttggattttgtaat 28830247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 292
Target Start/End: Complemental strand, 43726431 - 43726386
Alignment:
Q  247 ttacttttcccaccctgtggatttcctcgcgcaccctattttttcc 292  Q
    |||||||||||||||| ||  ||||||||||| |||||||||||||    
T  43726431 ttacttttcccaccctatgtctttcctcgcgcgccctattttttcc 43726386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 462
Target Start/End: Complemental strand, 30721974 - 30721888
Alignment:
Q  380 gattttgtaatctagaaacttcaaaaagtagggcgcg---ttacatgatgtttccggattacataatccggaaac-cccctaaacac 462  Q
    ||||||||||||   |||||||||||| ||||||||    ||||||||| ||| |||||||||||||||| | || |||||||||||    
T  30721974 gattttgtaatccgaaaacttcaaaaaatagggcgcaatattacatgattttttcggattacataatccgaacactcccctaaacac 30721888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 285 - 462
Target Start/End: Complemental strand, 33611671 - 33611493
Alignment:
Q  285 ttttttccaaaatgcccttaagtttt-tggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggatt 383  Q
    ||||||| ||||||||||| || ||| ||||||| ||||| |||||||| |||||  |||||||  |||||| |||  |||| |||||||||| ||||||    
T  33611671 ttttttcaaaaatgcccttgaggtttctggatttcataatccagaatggtgtttttctttgttatagggtgaaaaatggagttacggattttttcggatt 33611572  T
Q  384 ttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33611571 ttgtaatttggaaacttcaaaaaatagggcgcgttacatgatgtttccggattacataatctggaaaccccctaaacac 33611493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 285 - 462
Target Start/End: Complemental strand, 18583805 - 18583627
Alignment:
Q  285 ttttttccaaaatgcccttaagttttt-ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatga-gtaacggatttttccggat 382  Q
    ||||||| ||||||||||| || |||| |||||| ||||| | |||||| |||||| |||||||  |||||| ||||||| || ||||| ||||||||||    
T  18583805 ttttttcaaaaatgcccttgaggttttcggatttcataatccggaatggtgttttcctttgttatagggtga-aaaatgaagttacggacttttccggat 18583707  T
Q  383 tttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18583706 tttgtaatctggaaacttaaaaaaatagggcgcgttacatgatgttttcggattacataatccggaaaccccctaaacac 18583627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 247 - 462
Target Start/End: Complemental strand, 34163022 - 34162804
Alignment:
Q  247 ttacttttcccaccctgtggatttcctcgcgcaccctattttttcc--aaaatgcccttaagtttttggattttataattcagaatggggttttcttttg 344  Q
    ||||||||||||||| |||| ||||||||||| |||| |||||| |  ||||| ||||| |||||  |||||| ||||| | |||||| |||||| ||||    
T  34163022 ttacttttcccacccagtgggtttcctcgcgcgccctttttttttccaaaaatacccttgagtttccggatttcataatccggaatggtgttttcctttg 34162923  T
Q  345 ttagcgggtgagaaaatgagtaacggattttt-ccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataat 443  Q
    |||  |||||| |||  ||||  ||| ||||| |||||||||||||||  ||||||||||||| ||||||| |||| |||||||||||||||||||||||    
T  34162922 ttatagggtgaaaaatggagttgcgggttttttccggattttgtaatccggaaacttcaaaaaatagggcgtgttagatgatgtttccggattacataat 34162823  T
Q  444 ccggaaaccccctaaacac 462  Q
    |||||||||||||||||||    
T  34162822 ccggaaaccccctaaacac 34162804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 247 - 462
Target Start/End: Original strand, 17000238 - 17000454
Alignment:
Q  247 ttacttttcccaccctgtggatttcctcgcgcaccctattttttcc--aaaatgcccttaagtttttggattttataattcagaatggggttttcttttg 344  Q
    |||||||| ||| |||||   ||||||||||||||||||||||| |  ||||||||||| |||||| |||||| ||||| |||||||| |||||| ||||    
T  17000238 ttactttttccatcctgtaagtttcctcgcgcaccctatttttttccaaaaatgcccttgagttttcggatttcataatccagaatggtgttttcctttg 17000337  T
Q  345 ttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatc 444  Q
    |||  |||||| |||  |||| |||| |||||||||||||||||||   ||||| ||||| | |||||| ||||| |||||||||| |||||||||||||    
T  17000338 ttatagggtgaaaaatggagttacgg-tttttccggattttgtaattcggaaacatcaaataatagggcacgttagatgatgtttctggattacataatc 17000436  T
Q  445 cggaaaccccctaaacac 462  Q
    ||||||||||||||||||    
T  17000437 cggaaaccccctaaacac 17000454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 312 - 462
Target Start/End: Complemental strand, 32817844 - 32817694
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    ||||| |||||| | |||||  ||||||||||||||  |||||| |||||||||||||| ||||||| ||||||||||||  ||||||||||||| ||||    
T  32817844 ggattatataatccggaatgatgttttcttttgttaaagggtgaaaaaatgagtaacgggtttttccagattttgtaatccggaaacttcaaaaaatagg 32817745  T
Q  412 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||| ||||||||||||||| |||||||||||||| |||||||||||||||    
T  32817744 gcgcattacatgatgtttccagattacataatccgaaaaccccctaaacac 32817694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 318 - 462
Target Start/End: Complemental strand, 40650903 - 40650758
Alignment:
Q  318 tataattcagaatggggttttcttttgttagcgggtgagaaaa-tgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcg 416  Q
    |||||| | |||||| ||||||||||||||  | |||| |||| |||||||||||||||| |||| |||||||||  ||||||||||||| ||||||| |    
T  40650903 tataatccggaatggtgttttcttttgttaaagcgtgaaaaaaatgagtaacggattttttcggaatttgtaatccggaaacttcaaaaaatagggcgtg 40650804  T
Q  417 ttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||    
T  40650803 ttacatgatgtttctggattacataatccggaaaccccttaaacac 40650758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 313 - 458
Target Start/End: Original strand, 42545895 - 42546039
Alignment:
Q  313 gattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtaggg 412  Q
    |||| |||||| | |||||| ||| ||||||||||  |||||| ||||||| |||||||||||||||||||||||||||  ||||||||||||| ||||     
T  42545895 gattatataatccggaatggtgttatcttttgttaaagggtga-aaaatgaataacggatttttccggattttgtaatccggaaacttcaaaaaatagga 42545993  T
Q  413 cgcgttacatgatgtttccggattacataatccggaaaccccctaa 458  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||||    
T  42545994 cgcgttacatgatgtttccggataacatgatccgaaaaccccctaa 42546039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 350 - 460
Target Start/End: Complemental strand, 44573291 - 44573181
Alignment:
Q  350 gggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaa 449  Q
    |||||| |||||||||||| ||||||| ||||||||||||||  ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  44573291 gggtgaaaaaatgagtaacagattttttcggattttgtaatccggaaacttcaaaaaatagggcgcgttacatgatgttttcggattacataatccggaa 44573192  T
Q  450 accccctaaac 460  Q
    | ||| |||||    
T  44573191 atcccttaaac 44573181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 313 - 462
Target Start/End: Complemental strand, 40908166 - 40908017
Alignment:
Q  313 gattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtaggg 412  Q
    ||||||||||| |  ||||| ||||||||||||||  |||||| ||||||||||||||||||||  | |||||| ||||  ||||||||||||| | |||    
T  40908166 gattttataatccgaaatggtgttttcttttgttaaagggtgaaaaaatgagtaacggattttttagaattttgcaatccggaaacttcaaaaaattggg 40908067  T
Q  413 cgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    || | |||||||||||| |||||||||||||||| |||||||||||||||    
T  40908066 cgtgctacatgatgttttcggattacataatccgaaaaccccctaaacac 40908017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 281 - 464
Target Start/End: Complemental strand, 43319462 - 43319277
Alignment:
Q  281 cctattttttcca-aaatgccctt-aagtttttggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttcc 378  Q
    ||||||||||| | |||||| ||| |||||| |||||||||||||   |||  | |||||| |||||||  |||||| ||||||||| ||||||||||||    
T  43319462 cctattttttctagaaatgctcttgaagtttctggattttataatctggaacagtgttttcctttgttaaagggtgaaaaaatgagttacggatttttcc 43319363  T
Q  379 ggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacactc 464  Q
    |||||||||||||  ||||  | ||||| || ||||||||||||||| ||| |||||||||||||||| |||||||||||||||||    
T  43319362 ggattttgtaatccggaaatctaaaaaaatatggcgcgttacatgattttttcggattacataatccgaaaaccccctaaacactc 43319277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 362 - 461
Target Start/End: Original strand, 23442714 - 23442813
Alignment:
Q  362 gagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaaca 461  Q
    |||| ||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||| |||||    
T  23442714 gagttacggatttttccggattttataatctggaaacttcaaaaaatagggcgcgttacatgatgtttccggattatataattcggaaaccccccaaaca 23442813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 312 - 462
Target Start/End: Original strand, 49677419 - 49677559
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    ||||| |||||| | |||||| ||||||||||||||  |||||| ||||||||||||| ||||          |||||||| ||||||||||||| ||||    
T  49677419 ggattatataatccggaatggtgttttcttttgttaaagggtgaaaaaatgagtaacgaattt----------tgtaatctggaaacttcaaaaaatagg 49677508  T
Q  412 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  49677509 gcgcgttacatgatgtttccggattacataatccagaaaccccctaaacac 49677559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 334 - 455
Target Start/End: Complemental strand, 15070053 - 15069932
Alignment:
Q  334 gttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccgg 433  Q
    ||||||||||||||  ||| ||  ||||||||||||||| ||| ||||||||||||||  ||||||||||||| |||| || ||||||||||||||||||    
T  15070053 gttttcttttgttaaagggagaacaaatgagtaacggatattttcggattttgtaatccggaaacttcaaaaaataggacgtgttacatgatgtttccgg 15069954  T
Q  434 attacataatccggaaaccccc 455  Q
    |||| |||||||||||||||||    
T  15069953 attatataatccggaaaccccc 15069932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 357 - 462
Target Start/End: Complemental strand, 45047038 - 45046934
Alignment:
Q  357 aaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccct 456  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||  ||||| | |||||||||||||||| |||||||||||||||||||||||    
T  45047038 aaaatgagtaacggatttttccggattttgtaatccgaaaacttcaaaaaagagggc-cattacatgatgtttccgaattacataatccggaaaccccct 45046940  T
Q  457 aaacac 462  Q
    ||||||    
T  45046939 aaacac 45046934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 327 - 461
Target Start/End: Complemental strand, 41584888 - 41584754
Alignment:
Q  327 gaatggggttttcttttgttagcgggtgagaaaatga-gtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgat 425  Q
    |||||| ||||||||||||||  |||||| ||||||| || |||| |||||| |||||||||||||  |||| |||||||| ||||||  ||||||||||    
T  41584888 gaatggtgttttcttttgttatagggtga-aaaatgaagttacgggtttttctggattttgtaatccggaaatttcaaaaactagggcatgttacatgat 41584790  T
Q  426 gtttccggattacataatccggaaaccccctaaaca 461  Q
    |||| |||||||||||||||||||||||||||||||    
T  41584789 gttttcggattacataatccggaaaccccctaaaca 41584754  T

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Target: chr1; HSP #16
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 378 - 455
Target Start/End: Complemental strand, 24471481 - 24471405
Alignment:
Q  378 cggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccc 455  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24471481 cggattttgtaatccagaaacttcaaaaa-tagggcgcgttacatgatgtttccggattacataatccgaaaaccccc 24471405  T

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Target: chr1; HSP #17
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 378 - 462
Target Start/End: Complemental strand, 30829632 - 30829549
Alignment:
Q  378 cggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||||||||||||||  ||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  30829632 cggattttgtaatccggaaacttcaaaaa-tagggcgcgttacatgatgttttcggattacataatccgaaaaccccctaaacac 30829549  T

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Target: chr1; HSP #18
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 335 - 462
Target Start/End: Complemental strand, 45568087 - 45567959
Alignment:
Q  335 ttttcttttgttagcgggtgagaaaa-tgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccgg 433  Q
    |||||||||||||  |||||| |||| |||||||||| |||||||| ||||||||||   ||||||||||||| ||||||||| |||||||| |||  ||    
T  45568087 ttttcttttgttaaagggtgaaaaaaatgagtaacgggtttttccgaattttgtaattcggaaacttcaaaaaatagggcgcgctacatgatatttttgg 45567988  T
Q  434 attacataatccggaaaccccctaaacac 462  Q
    ||||||| ||||| |||||||||||||||    
T  45567987 attacatgatccgaaaaccccctaaacac 45567959  T

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Target: chr1; HSP #19
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 369 - 455
Target Start/End: Original strand, 49786252 - 49786338
Alignment:
Q  369 ggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccc 455  Q
    |||||||||||||||||| ||||   |||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  49786252 ggatttttccggattttgcaatccgaaaactttaaaaaataggacgcgttacatgatgtttccggattacataatccggaaaccccc 49786338  T

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Target: chr1; HSP #20
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 318 - 461
Target Start/End: Original strand, 7011141 - 7011285
Alignment:
Q  318 tataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttcc-ggattttgtaatctagaaacttcaaaaagta-gggcgc 415  Q
    |||||||| ||| || ||||||| ||||||  |||||| |||||||||||||||||||| | |||||||||||||  |||||||||||||  | ||||||    
T  7011141 tataattcggaaaggtgttttctattgttaaagggtga-aaaatgagtaacggattttttctggattttgtaatccggaaacttcaaaaaaaaagggcgc 7011239  T
Q  416 gttacatgatgtttccggattacataatccggaaaccccctaaaca 461  Q
    ||||||||||||||||| || |  ||||||| ||||||||||||||    
T  7011240 gttacatgatgtttccgaatcatgtaatccgaaaaccccctaaaca 7011285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 378 - 462
Target Start/End: Original strand, 32542388 - 32542472
Alignment:
Q  378 cggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||||||||||||||  ||| ||||||||| ||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  32542388 cggattttgtaatccggaatcttcaaaaaatagggtgcgttacatgatgtttacggattacataatccagaaaccccctaaacac 32542472  T

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Target: chr1; HSP #22
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 335 - 425
Target Start/End: Complemental strand, 52745027 - 52744937
Alignment:
Q  335 ttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgat 425  Q
    |||||||||||||  | |||| ||||||||||||||||||||||| ||||||||||||  |||||||||||| ||||||||| ||||||||    
T  52745027 ttttcttttgttaaagtgtgaaaaaatgagtaacggatttttccgaattttgtaatctgaaaacttcaaaaaatagggcgcgctacatgat 52744937  T

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Target: chr1; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 312 - 462
Target Start/End: Original strand, 38885165 - 38885303
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    ||||| |||||| | |||||| ||||||||||||||  |||||| |||||||||||| ||||||||||||||           | |||| |||||  |||    
T  38885165 ggattatataatccggaatggtgttttcttttgttaaagggtgaaaaaatgagtaacagatttttccggatt-----------acacttaaaaaaagagg 38885253  T
Q  412 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||| |||||||||||||| | |||||||||||||||||||||| |||||||    
T  38885254 gcgtgttacatgatgttt-cagattacataatccggaaaccccttaaacac 38885303  T

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Target: chr1; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 462
Target Start/End: Complemental strand, 28866806 - 28866714
Alignment:
Q  369 ggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||||||||||||||||||  ||| ||  ||||| ||||||||| |||||||| |||||||||||||||||| | | |||| ||||||||    
T  28866806 ggatttttccggattttgtaatccggaa-ctataaaaaatagggcgcgctacatgatttttccggattacataatctgaacacccgctaaacac 28866714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 312 - 464
Target Start/End: Original strand, 38950207 - 38950347
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    |||||||||||||| ||||||  ||||| |||||||   | ||| ||||||||| |||||||||||| ||||||||||||         |||||| ||||    
T  38950207 ggattttataattcggaatggtattttcctttgttaaaag-tga-aaaatgagttacggatttttccagattttgtaatc---------caaaaa-tagg 38950294  T
Q  412 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacactc 464  Q
    |||||||||||||| ||| | |||||||||||||| |||| ||||||||||||    
T  38950295 gcgcgttacatgattttttcagattacataatccgaaaactccctaaacactc 38950347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 373 - 443
Target Start/End: Original strand, 34006246 - 34006316
Alignment:
Q  373 ttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataat 443  Q
    ||||||||||||| |||||  |||| |||||||| ||||||| | |||||||| |||||||||||||||||    
T  34006246 ttttccggattttttaatccggaaaattcaaaaaatagggcgggctacatgatttttccggattacataat 34006316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 461
Target Start/End: Complemental strand, 6223949 - 6223821
Alignment:
Q  334 gttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttca-aaaagtagggcgcgttacatgatgtttccg 432  Q
    |||||| |||||||  |||||| ||||||||| |||||||||| || |||||  ||||   |||||||| |||| ||| |||| ||||||||| |||  |    
T  6223949 gttttcctttgttatagggtgaaaaaatgagttacggattttttcgaatttttcaatccgaaaacttcaaaaaaatagagcgcattacatgatttttttg 6223850  T
Q  433 gattacataatccggaaaccccctaaaca 461  Q
    |||||||||||||| | ||||| ||||||    
T  6223849 gattacataatccgaacaccccataaaca 6223821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 435
Target Start/End: Original strand, 27794711 - 27794903
Alignment:
Q  247 ttacttttcccaccctgtggatttcctcgcgcaccctatt----ttttccaaaatgccctt-aagtttttggattttataattcagaatggggttttctt 341  Q
    ||||||| |||||||| |  |||||||||||| || ||||    ||||| ||||||||||| || |||| |||||| ||||| |  | ||| |||||| |    
T  27794711 ttactttacccaccctattcatttcctcgcgcgccttattatttttttcaaaaatgcccttgaaattttcggatttcataatccgaactggtgttttcct 27794810  T
Q  342 ttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggat 435  Q
    ||||||  |||||| ||||||||| | |||||||| | ||||||||||||   |||  ||||||| |||||||| ||||||||| ||| |||||    
T  27794811 ttgttatagggtgaaaaaatgagttatggattttttcagattttgtaatccgaaaatctcaaaaa-tagggcgctttacatgattttttcggat 27794903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 368 - 462
Target Start/End: Complemental strand, 26723660 - 26723572
Alignment:
Q  368 cggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    |||||||||  |||||||||||||  ||||||||||||| ||||||| | |||||||| ||||||     ||||||||| | |||||||||||||    
T  26723660 cggatttttttggattttgtaatccggaaacttcaaaaaatagggcg-gctacatgatttttccg-----cataatccgaacaccccctaaacac 26723572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 449
Target Start/End: Complemental strand, 18238833 - 18238805
Alignment:
Q  421 atgatgtttccggattacataatccggaa 449  Q
    |||||||||||||||||||||||||||||    
T  18238833 atgatgtttccggattacataatccggaa 18238805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 49852843 - 49852799
Alignment:
Q  246 tttacttttcccaccctgtggatttcctcgcgcaccctatttttt 290  Q
    ||||||||||||||||| ||  ||||||||||| |||||||||||    
T  49852843 tttacttttcccaccctatgtctttcctcgcgcgccctatttttt 49852799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 313 - 462
Target Start/End: Complemental strand, 142194 - 142046
Alignment:
Q  313 gattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtaggg 412  Q
    |||| |||||||| |||||  ||||||||||||||  |||||| |||||| ||||| ||||||||| ||||||||||||  ||||||||||||| |||||    
T  142194 gattatataattcggaatgatgttttcttttgttaaagggtga-aaaatgtgtaacagatttttccagattttgtaatccggaaacttcaaaaaataggg 142096  T
Q  413 cgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  142095 cgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 142046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 334 - 462
Target Start/End: Original strand, 23071 - 23198
Alignment:
Q  334 gttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagggcgcgttacatgatgtttccgg 433  Q
    |||||||||||||   |||||| ||||||||||||||||||||||| ||||| |||||  ||||||||||||| ||||| || |||||||||||||||||    
T  23071 gttttcttttgttgaagggtga-aaaatgagtaacggatttttccgaattttataatccggaaacttcaaaaaatagggtgcattacatgatgtttccgg 23169  T
Q  434 attacataatccggaaaccccctaaacac 462  Q
    |||| ||||||||||||||||||||||||    
T  23170 attatataatccggaaaccccctaaacac 23198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 312 - 462
Target Start/End: Complemental strand, 9730 - 9580
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaatctagaaacttcaaaaagtagg 411  Q
    |||||| ||||||| |||| | |||||| |||||||  |||||| |||  |||| |||| |||||||| |||||||||||  ||||||||||||| ||||    
T  9730 ggatttcataattcggaattgtgttttcctttgttatagggtgaaaaatagagttacgggtttttccgaattttgtaatccggaaacttcaaaaaatagg 9631  T
Q  412 gcgcgttacatgatgtttccggattacataatccggaaaccccctaaacac 462  Q
     |||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  9630 acgcgttacatgatgtttccggattacataatccgaaaaccccctgaacac 9580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 312 - 390
Target Start/End: Original strand, 140534 - 140612
Alignment:
Q  312 ggattttataattcagaatggggttttcttttgttagcgggtgagaaaatgagtaacggatttttccggattttgtaat 390  Q
    ||||| |||||| | |||||  ||||||||||||||   ||||| ||||||||||| ||||||||||||||||||||||    
T  140534 ggattatataatccggaatgatgttttcttttgttaaaaggtgaaaaaatgagtaaaggatttttccggattttgtaat 140612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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