View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1696-Insertion-13 (Length: 349)
Name: NF1696-Insertion-13
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696-Insertion-13 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 20 - 337
Target Start/End: Complemental strand, 32601327 - 32601010
Alignment:
| Q |
20 |
tattttgtaaaaaatagtacttactagtttcatacgttgtgcaaatcaggtatccaccaatgagtgaagccttattaaaatctggaaggccaatcttctt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32601327 |
tattttgtaaaaaatagtacttactagtttcatacgttgtgtaaatcaggtatccaccaatgagtgaagccttattaaaatctggaaggccaatcttctt |
32601228 |
T |
|
| Q |
120 |
ctctatgtgtgaatggtgagctggattggtgataatgtttctcatacataattgatatttcattttctatttcattctaatttcttttttgaaacatagg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
32601227 |
ctctatgtgtgaatggtgagctggattggtgataatgtttctcatacataattgatatttcattttatatttcattataatttcttttttgaaacatagg |
32601128 |
T |
|
| Q |
220 |
ggatgggaagatccagctacatgggccaaaagtgtgggaaatagtcggagaacaactggagatattgaagataactggaataggtaaaattaatatgata |
319 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32601127 |
ggatgggaagatcctgctacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattgaagataactggaataggtaaaattaatatgata |
32601028 |
T |
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| Q |
320 |
actcacttattttcttca |
337 |
Q |
| |
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|||||||||||||||||| |
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| T |
32601027 |
actcacttattttcttca |
32601010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 28 - 325
Target Start/End: Complemental strand, 32590848 - 32590551
Alignment:
| Q |
28 |
aaaaaatagtacttactagtttcatacgttgtgcaaatcaggtatccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttctctatgt |
127 |
Q |
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||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32590848 |
aaaaaatagtactcactagtttcatacgttgtgtaaatcaggtatccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttctctgtgt |
32590749 |
T |
|
| Q |
128 |
gtgaatggtgagctggattggtgataatgtttctcatacataattgatatttcattttctatttcattctaatttcttttttgaaacataggggatggga |
227 |
Q |
| |
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|||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| ||| || || |||||||||||||||||||| ||| |
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| T |
32590748 |
gtgaatggtgagttgaattagtgataatgtttctcatacataattgatatttcattttctattttattatacttgcttttttgaaacataggggaaagga |
32590649 |
T |
|
| Q |
228 |
agatccagctacatgggccaaaagtgtgggaaatagtcggagaacaactggagatattgaagataactggaataggtaaaattaatatgataactcac |
325 |
Q |
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||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||| ||| |||||||||||||||||||||| |||| |
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| T |
32590648 |
agatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggtaaaattaatatgataattcac |
32590551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 24883186 - 24883258
Alignment:
| Q |
67 |
aggtatccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttctctatgtgtgaatggtgag |
139 |
Q |
| |
|
||||| |||| |||| ||||||| ||| || ||||||||||||||||||||| |||| ||||||||||||||| |
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|
| T |
24883186 |
aggtacccacgaatgggtgaagctttagtacaatctggaaggccaatcttctactctttgtgtgaatggtgag |
24883258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 62 - 304
Target Start/End: Complemental strand, 34578633 - 34578391
Alignment:
| Q |
62 |
aaatcaggtatccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttctctatgtgtgaatggtgagctggattggtgataatgtttct |
161 |
Q |
| |
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|||| ||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||| || |||| | ||||||| |
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| T |
34578633 |
aaattaggtatccaccaatgagtgaagctttattaaactccggaaggccaatcttcttctctatgtgtgaatggtgagttgaattgatcgcggtgtttct |
34578534 |
T |
|
| Q |
162 |
catacataattgatatttcattttctatttcattctaatttcttttttgaaacataggggatgggaagatccagctacatgggccaaaagtgtgggaaat |
261 |
Q |
| |
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||||||||| ||||||||||||||||||| || | ||||||| | ||| ||||||||||||||||| || || ||||||||||||||||||||| |
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| T |
34578533 |
catacataaacaatatttcattttctatttctcacttaattcttttctaaaattcaggggatgggaagatcctgcaacgtgggccaaaagtgtgggaaat |
34578434 |
T |
|
| Q |
262 |
agtcggagaacaactggagatattgaagataactggaataggt |
304 |
Q |
| |
|
||| ||||||| || || ||||| |||||||| ||||| |||| |
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|
| T |
34578433 |
agttggagaaccacgggtgatatagaagataattggaagaggt |
34578391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 67 - 306
Target Start/End: Complemental strand, 34594332 - 34594089
Alignment:
| Q |
67 |
aggtatccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttctctatgtgtgaatggtgagctgga-ttggtgataatgtttctcata |
165 |
Q |
| |
|
||||| || |||||||||||||||||| | |||||||||||| ||||||||||||| |||||||||||||||| || | || || |||||||||||| |
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| T |
34594332 |
aggtacccgccaatgagtgaagccttaatgaaatctggaaggtcaatcttcttctcaatgtgtgaatggtgagttgaaattaaatatgatgtttctcata |
34594233 |
T |
|
| Q |
166 |
cataattgatattt---cattttctatttcattctaatttcttttttgaaacataggggatgggaagatccagctacatgggccaaaagtgtgggaaata |
262 |
Q |
| |
|
||| | | ||||| || |||||| | | || | |||| || ||||||||||||||||||| ||||| |||||||| |||||||||||||||| |
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| T |
34594232 |
catgaataatattattccaatttctactagcctttacataattttgtggaacataggggatgggaagacccagcaacatgggcaaaaagtgtgggaaata |
34594133 |
T |
|
| Q |
263 |
gtcggagaacaactggagatattgaagataactggaataggtaa |
306 |
Q |
| |
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|| |||||||||| || |||||||||||||| |||||||||||| |
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| T |
34594132 |
gttggagaacaacaggtgatattgaagataattggaataggtaa |
34594089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 139
Target Start/End: Complemental strand, 35124351 - 35124249
Alignment:
| Q |
37 |
tacttactagtttcatacgttgtgcaaatcaggtatccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttctctatgtgtgaatggt |
136 |
Q |
| |
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|||||| |||||||||| || || |||| ||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
35124351 |
tacttattagtttcataaattttgtaaattaggtacccaccaatgagtgaagccttgttaaactctggaagaccaatcttcttctctatgtgtgaatggt |
35124252 |
T |
|
| Q |
137 |
gag |
139 |
Q |
| |
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||| |
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|
| T |
35124251 |
gag |
35124249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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