View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1696-Insertion-14 (Length: 404)

Name: NF1696-Insertion-14
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1696-Insertion-14
NF1696-Insertion-14
[»] chr2 (22 HSPs)
chr2 (11-404)||(39129603-39129996)
chr2 (11-396)||(39495102-39495487)
chr2 (26-226)||(39427280-39427480)
chr2 (18-402)||(39123644-39124028)
chr2 (107-302)||(39602252-39602447)
chr2 (96-253)||(39398795-39398952)
chr2 (265-396)||(39458337-39458468)
chr2 (20-253)||(39467279-39467512)
chr2 (147-288)||(39369526-39369667)
chr2 (117-278)||(39381878-39382039)
chr2 (96-253)||(39478961-39479118)
chr2 (296-402)||(39152020-39152126)
chr2 (265-402)||(39136403-39136540)
chr2 (109-302)||(39220423-39220616)
chr2 (263-392)||(39427502-39427631)
chr2 (104-253)||(44895988-44896137)
chr2 (94-302)||(39450760-39450968)
chr2 (327-402)||(39488065-39488140)
chr2 (310-402)||(39422347-39422439)
chr2 (361-402)||(39474186-39474227)
chr2 (147-239)||(39391508-39391600)
chr2 (147-278)||(39199177-39199308)
[»] chr6 (1 HSPs)
chr6 (96-253)||(16112599-16112756)
[»] chr7 (1 HSPs)
chr7 (296-386)||(19806780-19806870)
[»] chr5 (1 HSPs)
chr5 (151-239)||(33559761-33559849)


Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 11 - 404
Target Start/End: Complemental strand, 39129996 - 39129603
Alignment:
Q  11 agctctttaacctgttcttcaaattgcttcttcattgactcaaggtcctttacttgagcatgtggatcattcttactcaattgggttaccttgagtaact 110  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39129996 agctctttaacctgctcttcaaattgcttcttcattgactcaaggccctttacttgagcatgtggatcattcttactcaattgggttaccttgagtaact 39129897  T
Q  111 tcttcctttcagactctagtatttctgcttgtctgtcaattaatttcttcattgcatcacgctctttctctttgctcttgagttccacagtacactgagc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39129896 tcttcctttcagactctagtatttctgcttgtctgtcaattaatttcttcattgcatcacgctctttctctttgctcttgagttccacagtacactgagc 39129797  T
Q  211 aatattttgggaaagatccttgagttcctgtttcttcctttcatagatattatcaatgttatccatgagtggacgaagttttgtttcttttgtctttact 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39129796 aatattttgggaaagatccttgagttcctgtttcttcctttcatagatattatcaatgttatccatgagtggacgaagttttgtttcttttgtctttact 39129697  T
Q  311 tcttccttccgttctgcaatcaagttgtccatcaaacaaagttgtgcttgctttgctgcaaaatccttgacacattcttcaattttcccctgga 404  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39129696 tcttcgttccgctctgcaatcaagttgtccatcaaacaaagttgtgcttgctttgctgcaaaatccttgacacattcttcaattttcccctgga 39129603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 11 - 396
Target Start/End: Original strand, 39495102 - 39495487
Alignment:
Q  11 agctctttaacctgttcttcaaattgcttcttcattgactcaaggtcctttacttgagcatgtggatcattcttactcaattgggttaccttgagtaact 110  Q
    ||||| ||||||||  | ||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||| |||||  ||| | | |||||||    
T  39495102 agctccttaacctgggcatcaaattgcttcttcattgactcaaagtccttcacttgagcacgtggatcattcttacttaattgcattatcctaagtaact 39495201  T
Q  111 tcttcctttcagactctagtatttctgcttgtctgtcaattaatttcttcattgcatcacgctctttctctttgctcttgagttccacagtacactgagc 210  Q
    |  |||||||  |||||| |  ||| ||||||  |||||||| ||| ||||||| ||||| |||||||||||||  ||| |||||||||| ||| |||||    
T  39495202 ttatcctttccaactctaatcgttcagcttgttcgtcaattagttttttcattgtatcacactctttctctttggccttaagttccacagaacattgagc 39495301  T
Q  211 aatattttgggaaagatccttgagttcctgtttcttcctttcatagatattatcaatgttatccatgagtggacgaagttttgtttcttttgtctttact 310  Q
    ||| |||||||||||| | ||||||||||||| ||||| |||| |||  ||||||  ||||||||||| ||||||||||| ||||||||||||||| | |    
T  39495302 aattttttgggaaagagctttgagttcctgttccttcccttcacagaccttatcaccgttatccatgactggacgaagttctgtttcttttgtcttgagt 39495401  T
Q  311 tcttccttccgttctgcaatcaagttgtccatcaaacaaagttgtgcttgctttgctgcaaaatccttgacacattcttcaatttt 396  Q
    |||| ||| || ||| |||||||||  ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||    
T  39495402 tcttgcttgcgctctccaatcaagtcatccatcaaacagagctgtgcttgctttgctgcaaaatccttgacgcattcttcaatttt 39495487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 226
Target Start/End: Original strand, 39427280 - 39427480
Alignment:
Q  26 tcttcaaattgcttcttcattgactcaaggtcctttacttgagcatgtggatcattcttactcaattgggttaccttgagtaacttcttcctttcagact 125  Q
    ||||||||||||||||||| ||||||||  |||   | |||||  ||||||||||||||||| |||||  ||||||| ||||||||||||||||| || |    
T  39427280 tcttcaaattgcttcttcagtgactcaaactccaccatttgagtttgtggatcattcttacttaattgaattaccttcagtaacttcttcctttctgatt 39427379  T
Q  126 ctagtatttctgcttgtctgtcaattaatttcttcattgcatcacgctctttctctttgctcttgagttccacagtacactgagcaatattttgggaaag 225  Q
     || | |||||||||||  |||||||  ||| ||||| ||||||||||||||||||||  |||| |||||||||||||| | |||||| ||| |||||||    
T  39427380 ttaatctttctgcttgttcgtcaatttgttttttcatcgcatcacgctctttctctttagtcttaagttccacagtacattcagcaatttttcgggaaag 39427479  T
Q  226 a 226  Q
    |    
T  39427480 a 39427480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 402
Target Start/End: Complemental strand, 39124028 - 39123644
Alignment:
Q  18 taacctgttcttcaaattgcttcttcattgactcaaggtcctttacttgagcatgtggatcattcttactcaattgggttaccttgagtaacttcttcct 117  Q
    ||||||| |||||||||||||| ||| ||||||||  |||| | | ||||||| || ||||||||||||| |||||  ||||  | || |||||| ||||    
T  39124028 taacctgctcttcaaattgcttattcgttgactcatagtccatcatttgagcacgttgatcattcttacttaattgcattacgctcagaaacttcatcct 39123929  T
Q  118 ttcagactctagtatttctgcttgtctgtcaattaatttcttcattgcatcacgctctttctctttgctcttgagttccacagtacactgagcaatattt 217  Q
    ||| ||||||| | ||||||| |||  |||||||   || |||||||| | |  |  |||||||||| |||| ||||||| |||||| | |||| |  |     
T  39123928 ttccgactctaatctttctgcctgttcgtcaatttgctttttcattgctttaatcagtttctctttggtcttaagttccaaagtacattcagcagttctg 39123829  T
Q  218 tgggaaagatccttgagttcctgtttcttcctttcatagatattatcaatgttatccatgagtggacgaagttttgtttcttttgtctttacttcttcct 317  Q
    | ||||| | |||||||||||   | | ||| || |  ||  ||||||||||||||||||| | ||| ||||| ||||||||||||||| | ||||| ||    
T  39123828 ttggaaaaagccttgagttcccactccatccctttacggaccttatcaatgttatccatgatttgacaaagttctgtttcttttgtcttcagttctttct 39123729  T
Q  318 tccgttctgcaatcaagttgtccatcaaacaaagttgtgcttgctttgctgcaaaatccttgacacattcttcaattttcccctg 402  Q
    | || ||| |||||| || |||||||||| | ||||||||||||||| |   ||||||||||||| |||||||| |||| |||||    
T  39123728 tgcgctctccaatcatgtcgtccatcaaagagagttgtgcttgctttacaagaaaatccttgacaaattcttcagtttttccctg 39123644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 107 - 302
Target Start/End: Complemental strand, 39602447 - 39602252
Alignment:
Q  107 aacttcttcctttcagactctagtatttctgcttgtctgtcaattaatttcttcattgcatcacgctctttctctttgctcttgagttccacagtacact 206  Q
    |||||||||||||  ||||||| | |||||||||| |   |||||||| | |||||||||||| ||||| ||||||||  ||| ||||||| |||| | |    
T  39602447 aacttcttccttttggactctaatttttctgcttgcccaccaattaatctgttcattgcatcaagctctatctctttggccttaagttccaaagtaaatt 39602348  T
Q  207 gagcaatattttgggaaagatccttgagttcctgtttcttcctttcatagatattatcaatgttatccatgagtggacgaagttttgtttcttttg 302  Q
     |||||| |||||||||||| |||||||||||| || ||||||||||  |   |||||||||||||| |||| | ||||||||| | |||||||||    
T  39602347 cagcaattttttgggaaagagccttgagttcctcttccttcctttcacggtccttatcaatgttatcaatgactcgacgaagttctatttcttttg 39602252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 96 - 253
Target Start/End: Original strand, 39398795 - 39398952
Alignment:
Q  96 ttaccttgagtaacttcttcctttcagactctagtatttctgcttgtctgtcaattaatttcttcattgcatcacgctctttctctttgctcttgagttc 195  Q
    ||||||| ||||||||||||||||| |||||||  ||||||||||||| |  || |||| | |||||||||||| ||||||||||||||  ||  |||||    
T  39398795 ttacctttagtaacttcttcctttccgactctaaaatttctgcttgtccgctaactaatattttcattgcatcaagctctttctctttggactctagttc 39398894  T
Q  196 cacagtacactgagcaatattttgggaaagatccttgagttcctgtttcttcctttca 253  Q
    || | |||| |  ||||  ||||||| |||| |||||||||||| || ||||||||||    
T  39398895 catattacattcggcaactttttgggcaagagccttgagttcctcttccttcctttca 39398952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 265 - 396
Target Start/End: Complemental strand, 39458468 - 39458337
Alignment:
Q  265 aatgttatccatgagtggacgaagttttgtttcttttgtctttacttcttccttccgttctgcaatcaagttgtccatcaaacaaagttgtgcttgcttt 364  Q
    |||||||||| ||| | || |||||| | | ||||||||||| | ||||| ||| || ||| |||||||||  ||||||||| | |||||||||| ||||    
T  39458468 aatgttatccttgacttgatgaagttctatctcttttgtcttgagttcttgcttgcgctctccaatcaagtcttccatcaaatagagttgtgcttccttt 39458369  T
Q  365 gctgcaaaatccttgacacattcttcaatttt 396  Q
    ||||||||||||| |||||||| |||||||||    
T  39458368 gctgcaaaatcctcgacacatttttcaatttt 39458337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 39467512 - 39467279
Alignment:
Q  20 acctgttcttcaaattgcttcttcattgactcaaggtcctttacttgagcatgtggatcattcttactcaattgggttaccttgagtaacttcttccttt 119  Q
    ||||| ||||||||| |||||||| ||||| ||| ||| || | | ||||||||||||||||||  || | |    ||||||| ||||||||||||||||    
T  39467512 acctgatcttcaaatcgcttcttctttgacgcaaagtctttcattcgagcatgtggatcattctgtctgattgatattacctttagtaacttcttccttt 39467413  T
Q  120 cagactctagtatttctgcttgtctgtcaattaatttcttcattgcatcacgctctttctctttgctcttgagttccacagtacactgagcaatattttg 219  Q
    | ||||||| ||||||||||||||||  ||  | | | ||||||| |||| ||||||||||||||  ||  ||||||| | |||| | |||||  |||||    
T  39467412 cggactctaatatttctgcttgtctgctaaccagtattttcattgaatcaagctctttctctttggactcaagttccatattacatttagcaactttttg 39467313  T
Q  220 ggaaagatccttgagttcctgtttcttcctttca 253  Q
     | |||| |||||||| ||| || ||| ||||||    
T  39467312 agtaagagccttgagtccctcttccttactttca 39467279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 147 - 288
Target Start/End: Complemental strand, 39369667 - 39369526
Alignment:
Q  147 caattaatttcttcattgcatcacgctctttctctttgctcttgagttccacagtacactgagcaatattttgggaaagatccttgagttcctgtttctt 246  Q
    ||||||| || |||| ||||||| ||||| ||||||||  | | | ||||||||||   | |||||| |||||||||||| |||||||||||| || |||    
T  39369667 caattaagttattcactgcatcaagctctatctctttggccataaattccacagtaatttcagcaattttttgggaaagagccttgagttcctcttcctt 39369568  T
Q  247 cctttcatagatattatcaatgttatccatgagtggacgaag 288  Q
    |||||||| ||  |||||||||||||| |||| | |||||||    
T  39369567 cctttcatggaccttatcaatgttatcaatgacttgacgaag 39369526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 278
Target Start/End: Original strand, 39381878 - 39382039
Alignment:
Q  117 tttcagactctagtatttctgcttgtctgtcaattaatttcttcattgcatcacgctctttctctttgctcttgagttccacagtacactgagcaatatt 216  Q
    |||||||||||| | |||| |||||| || ||||||| || ||||||| |||| ||||| ||||||||  ||| ||||||| | || | | |||||| |     
T  39381878 tttcagactctaatttttccgcttgtgtgccaattaacttgttcattgtatcaagctctatctctttggccttaagttccaaaataaattcagcaatttg 39381977  T
Q  217 ttgggaaagatccttgagttcctgtttcttcctttcatagatattatcaatgttatccatga 278  Q
    |||||||||| |||||||||||| || ||||||||||  |   |||||||||||||| ||||    
T  39381978 ttgggaaagagccttgagttcctcttccttcctttcacggtccttatcaatgttatcaatga 39382039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 96 - 253
Target Start/End: Original strand, 39478961 - 39479118
Alignment:
Q  96 ttaccttgagtaacttcttcctttcagactctagtatttctgcttgtctgtcaattaatttcttcattgcatcacgctctttctctttgctcttgagttc 195  Q
    ||||||| |||| ||||||||||| |||||||| |||||||||||||| |  |||| || | |||||||||||| |||||| ||| ||| |||| |||||    
T  39478961 ttacctttagtaccttcttcctttaagactctaatatttctgcttgtccgctaattgatattttcattgcatcaagctcttgctcgttggtcttaagttc 39479060  T
Q  196 cacagtacactgagcaatattttgggaaagatccttgagttcctgtttcttcctttca 253  Q
    || | |||| | || ||  || | || |||| |||||||||||| || ||||||||||    
T  39479061 cagattacattcagaaactttctcggtaagagccttgagttcctcttccttcctttca 39479118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 402
Target Start/End: Complemental strand, 39152126 - 39152020
Alignment:
Q  296 tcttttgtctttacttcttccttccgttctgcaatcaagttgtccatcaaacaaagttgtgcttgctttgctgcaaaatccttgacacattcttcaattt 395  Q
    ||||||||||| | ||||| ||| || ||| |||||||||  ||||||||| | || ||  ||| ||||||| ||||||||||||||||||| |||||||    
T  39152126 tcttttgtcttgagttcttgcttgcgctctccaatcaagtcctccatcaaatagagctgcccttcctttgctacaaaatccttgacacattcatcaattt 39152027  T
Q  396 tcccctg 402  Q
    |||||||    
T  39152026 tcccctg 39152020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 402
Target Start/End: Complemental strand, 39136540 - 39136403
Alignment:
Q  265 aatgttatccatgagtggacgaagttttgtttcttttgtctttacttcttccttccgttctgcaatcaagttgtccatcaaacaaagttgtgcttgcttt 364  Q
    |||||||||||||| | |||||||||     ||||||||||||| ||||| |||  | ||| |||||||||  ||||||||||  || ||  ||| ||||    
T  39136540 aatgttatccatgacttgacgaagttccaactcttttgtctttagttctttcttgtgctctccaatcaagtcctccatcaaaccgagctgcccttccttt 39136441  T
Q  365 gctgcaaaatccttgacacattcttcaattttcccctg 402  Q
    ||| ||||||||||||||||||| |||||||| |||||    
T  39136440 gctacaaaatccttgacacattcgtcaatttttccctg 39136403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 302
Target Start/End: Complemental strand, 39220616 - 39220423
Alignment:
Q  109 cttcttcctttcagactctagtatttctgcttgtctgtcaattaatttcttcattgcatcacgctctttctctttgctcttgagttccacagtacactga 208  Q
    ||||||||||||||| ||||   |||||||||||    |||||||||| |||| ||||||| |||| |||||||||  |||    |||| || |   | |    
T  39220616 cttcttcctttcagattctaacttttctgcttgttcaccaattaatttgttcactgcatcaagctcgttctctttggccttacagtccaaagcaagttca 39220517  T
Q  209 gcaatattttgggaaagatccttgagttcctgtttcttcctttcatagatattatcaatgttatccatgagtggacgaagttttgtttcttttg 302  Q
    ||||| |||||||||||| |||||| ||||| || ||||||||||| |   |||||||||||||| |||| | ||||||||| | |||||||||    
T  39220516 gcaattttttgggaaagagccttgatttcctcttccttcctttcatggtccttatcaatgttatcaatgacttgacgaagttctatttcttttg 39220423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 392
Target Start/End: Original strand, 39427502 - 39427631
Alignment:
Q  263 tcaatgttatccatgagtggacgaagttttgtttcttttgtctttacttcttccttccgttctgcaatcaagttgtccatcaaacaaagttgtgcttgct 362  Q
    |||||||||||| ||| | ||||||||| ||||||||||||  | | ||| | ||| || ||| |||||||||  | ||||||||| || ||||||| ||    
T  39427502 tcaatgttatccttgacttgacgaagttctgtttcttttgttctgagttcctgcttgcgctctccaatcaagtcattcatcaaacagagctgtgctttct 39427601  T
Q  363 ttgctgcaaaatccttgacacattcttcaa 392  Q
    ||||  ||||||||||||||||||| ||||    
T  39427602 ttgcatcaaaatccttgacacattcatcaa 39427631  T

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Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 253
Target Start/End: Original strand, 44895988 - 44896137
Alignment:
Q  104 agtaacttcttcctttcagactctagtatttctgcttgtctgtcaattaatttcttcattgcatcacgctctttctctttgctcttgagttccacagtac 203  Q
    ||||||||||||||||| |||| ||   || |||||||  || ||| | |||||| ||| |||||| | ||||||||||||  ||| ||||||| |||||    
T  44895988 agtaacttcttcctttccgactgtaactttgctgcttgcatgccaactgatttctccatagcatcaaggtctttctctttggccttaagttccatagtac 44896087  T
Q  204 actgagcaatattttgggaaagatccttgagttcctgtttcttcctttca 253  Q
    | | | |||| |||||||||||| ||||||||| || || ||||||||||    
T  44896088 attcatcaattttttgggaaagagccttgagttgctcttccttcctttca 44896137  T

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Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 302
Target Start/End: Complemental strand, 39450968 - 39450760
Alignment:
Q  94 ggttaccttgagtaacttcttcctttcagactctagtatttctgcttgtctgtcaattaatttcttcattgcatcacgctctttctctttgctcttgagt 193  Q
    ||||||||| || ||||| ||| |||||||||||| | |||| |||||| || |||||| ||| |||| ||||||| | ||| ||||||||  |||   |    
T  39450968 ggttaccttcagcaacttgttcttttcagactctaatttttcagcttgtttgccaattagtttgttcaatgcatcaagttctatctctttggccttacat 39450869  T
Q  194 tccacagtacactgagcaatattttgggaaagatccttgagttcctgtttcttcctttcatagatattatcaatgttatccatgagtggacgaagttttg 293  Q
    |  | |||| | | |||| | |||||||||||| |||||||||||| || ||||||||||  |   |||||||||||| | |||| | ||||||||| |     
T  39450868 ttaaaagtaaattcagcatttttttgggaaagagccttgagttcctcttccttcctttcacggtccttatcaatgttaacaatgacttgacgaagttcta 39450769  T
Q  294 tttcttttg 302  Q
    |||||||||    
T  39450768 tttcttttg 39450760  T

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Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 402
Target Start/End: Original strand, 39488065 - 39488140
Alignment:
Q  327 caatcaagttgtccatcaaacaaagttgtgcttgctttgctgcaaaatccttgacacattcttcaattttcccctg 402  Q
    |||||||||  ||||||||| | || ||| ||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  39488065 caatcaagtcctccatcaaatatagctgtccttcctttgctacaaaatctttgacacattcttcaattttcccctg 39488140  T

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Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 310 - 402
Target Start/End: Original strand, 39422347 - 39422439
Alignment:
Q  310 ttcttccttccgttctgcaatcaagttgtccatcaaacaaagttgtgcttgctttgctgcaaaatccttgacacattcttcaattttcccctg 402  Q
    ||||| ||| || ||| |||||||||| ||||||||| | || |||| || ||||||| | || |||| ||||||||||||||||||||||||    
T  39422347 ttcttgcttgcgctctccaatcaagttttccatcaaagagagctgtgattcctttgctacgaattcctcgacacattcttcaattttcccctg 39422439  T

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Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 402
Target Start/End: Original strand, 39474186 - 39474227
Alignment:
Q  361 ctttgctgcaaaatccttgacacattcttcaattttcccctg 402  Q
    ||||||| |||||||||||||||||||||||||||| |||||    
T  39474186 ctttgctacaaaatccttgacacattcttcaatttttccctg 39474227  T

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Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 239
Target Start/End: Original strand, 39391508 - 39391600
Alignment:
Q  147 caattaatttcttcattgcatcacgctctttctctttgctcttgagttccacagtacactgagcaatattttgggaaagatccttgagttcct 239  Q
    |||||||||| ||  |||||||| | ||||||||||||  ||  |||||||||||||| | | |||| |||||||||||| |||| |||||||    
T  39391508 caattaatttgtttgttgcatcaagatctttctctttggcctgaagttccacagtacattcaacaattttttgggaaagagccttcagttcct 39391600  T

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Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 278
Target Start/End: Original strand, 39199177 - 39199308
Alignment:
Q  147 caattaatttcttcattgcatcacgctctttctctttgctcttgagttccacagtacactgagcaatattttgggaaagatccttgagttcctgtttctt 246  Q
    |||||||||| |||| |||| || ||||||||| ||||  |||   ||||| |||| | | |||||| | |||||||||| |||||||||||| || |||    
T  39199177 caattaatttgttcactgcaccaagctctttctgtttggccttatattccaaagtaaattcagcaatttgttgggaaagagccttgagttcctcttcctt 39199276  T
Q  247 cctttcatagatattatcaatgttatccatga 278  Q
    |||||||  |   |||||||||||||| ||||    
T  39199277 cctttcacggtccttatcaatgttatcaatga 39199308  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 253
Target Start/End: Complemental strand, 16112756 - 16112599
Alignment:
Q  96 ttaccttgagtaacttcttcctttcagactctagtatttctgcttgtctgtcaattaatttcttcattgcatcacgctctttctctttgctcttgagttc 195  Q
    ||||||| ||||||| ||||||||| ||||||| |||||| ||||||| |  |||| || | |||||||||||| |||||||||| |||  ||| |||||    
T  16112756 ttacctttagtaactgcttcctttcggactctaatatttccgcttgtccgctaattgatattttcattgcatcaagctctttctccttggacttaagttc 16112657  T
Q  196 cacagtacactgagcaatattttgggaaagatccttgagttcctgtttcttcctttca 253  Q
    || | |||  |  ||||  ||||||  |||| |||||||||||| |||||| ||||||    
T  16112656 cagattaccttccgcaactttttggttaagagccttgagttcctctttcttgctttca 16112599  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 386
Target Start/End: Complemental strand, 19806870 - 19806780
Alignment:
Q  296 tcttttgtctttacttcttccttccgttctgcaatcaagttgtccatcaaacaaagttgtgcttgctttgctgcaaaatccttgacacatt 386  Q
    ||||||||||||| ||||| ||| || ||| |||||||||  ||||||||||  || ||  ||| ||||||| ||||||||||||||||||    
T  19806870 tcttttgtctttagttctttcttgcgctctccaatcaagtcctccatcaaacggagctgcccttcctttgctacaaaatccttgacacatt 19806780  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 33559849 - 33559761
Alignment:
Q  151 taatttcttcattgcatcacgctctttctctttgctcttgagttccacagtacactgagcaatattttgggaaagatccttgagttcct 239  Q
    |||||| ||||| |||||| | ||||||||||||  ||  |||||||||||||| | |||||  |||||||||||| || |||||||||    
T  33559849 taatttgttcatcgcatcaagatctttctctttgacctgaagttccacagtacattcagcaaccttttgggaaagagccctgagttcct 33559761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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