View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1696-Insertion-15 (Length: 230)

Name: NF1696-Insertion-15
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1696-Insertion-15
NF1696-Insertion-15
[»] chr5 (16 HSPs)
chr5 (8-230)||(3299491-3299713)
chr5 (8-230)||(3392384-3392606)
chr5 (104-230)||(1849923-1850049)
chr5 (101-228)||(40418243-40418367)
chr5 (104-230)||(1163690-1163813)
chr5 (101-230)||(39879772-39879898)
chr5 (101-230)||(38987663-38987789)
chr5 (101-230)||(39726376-39726502)
chr5 (101-229)||(39399818-39399943)
chr5 (101-226)||(39168808-39168930)
chr5 (9-82)||(40418404-40418474)
chr5 (12-82)||(38987826-38987893)
chr5 (12-82)||(39726545-39726612)
chr5 (12-82)||(39879941-39880008)
chr5 (8-69)||(1163615-1163676)
chr5 (8-69)||(1850063-1850124)
[»] chr4 (3 HSPs)
chr4 (101-230)||(25912292-25912418)
chr4 (107-173)||(44444772-44444838)
chr4 (8-82)||(25912181-25912252)


Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 3299713 - 3299491
Alignment:
Q  8 ctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtttgtatctactcctccagaagacagg 107  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299713 ctgaacagcaacaactctaccattctcctcttcggcataactaattttggtgatcaaaatggcagcaggaaggtttgtatctactcctccagaagacagg 3299614  T
Q  108 tcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacgag 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299613 tcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacgag 3299514  T
Q  208 caaccatggcatcagctaaacga 230  Q
    |||||||||||||||||||||||    
T  3299513 caaccatggcatcagctaaacga 3299491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 3392606 - 3392384
Alignment:
Q  8 ctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtttgtatctactcctccagaagacagg 107  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392606 ctgaacagcaacaactctaccattctcctcttcggcataactaattttggtgatcaaaatggcagcaggaaggtttgtatctactcctccagaagacagg 3392507  T
Q  108 tcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacgag 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392506 tcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacgag 3392407  T
Q  208 caaccatggcatcagctaaacga 230  Q
    |||||||||||||||||||||||    
T  3392406 caaccatggcatcagctaaacga 3392384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 104 - 230
Target Start/End: Complemental strand, 1850049 - 1849923
Alignment:
Q  104 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca 203  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1850049 caggtcataaccaagagcatggtcaccaggttttaaaatacgactaagatgagtcctgatttgaaaagttgtgtgattattatttccaatatctttcaca 1849950  T
Q  204 cgagcaaccatggcatcagctaaacga 230  Q
    |||||||| ||||||| ||||||||||    
T  1849949 cgagcaactatggcattagctaaacga 1849923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 101 - 228
Target Start/End: Complemental strand, 40418367 - 40418243
Alignment:
Q  101 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   | |||||||||||||||||||    
T  40418367 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaatatctttc 40418271  T
Q  201 acacgagcaaccatggcatcagctaaac 228  Q
    |||||||||||||  |||||||||||||    
T  40418270 acacgagcaaccacagcatcagctaaac 40418243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 104 - 230
Target Start/End: Original strand, 1163690 - 1163813
Alignment:
Q  104 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||| |||    
T  1163690 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaa---gtgtgattattatttccaatatctttgaca 1163786  T
Q  204 cgagcaaccatggcatcagctaaacga 230  Q
    |||||||| ||||||| ||||||||||    
T  1163787 cgagcaactatggcattagctaaacga 1163813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 101 - 230
Target Start/End: Complemental strand, 39879898 - 39879772
Alignment:
Q  101 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  39879898 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 39879802  T
Q  201 acacgagcaaccatggcatcagctaaacga 230  Q
    |||||||||||||  |||||||||||||||    
T  39879801 acacgagcaaccacagcatcagctaaacga 39879772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 101 - 230
Target Start/End: Complemental strand, 38987789 - 38987663
Alignment:
Q  101 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  38987789 agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 38987693  T
Q  201 acacgagcaaccatggcatcagctaaacga 230  Q
    |||||||||||||  |||||||||||||||    
T  38987692 acacgagcaaccacagcatcagctaaacga 38987663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 101 - 230
Target Start/End: Complemental strand, 39726502 - 39726376
Alignment:
Q  101 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  39726502 agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 39726406  T
Q  201 acacgagcaaccatggcatcagctaaacga 230  Q
    |||||||||||||  |||||||||||||||    
T  39726405 acacgagcaaccacagcatcagctaaacga 39726376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 101 - 229
Target Start/End: Complemental strand, 39399943 - 39399818
Alignment:
Q  101 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 200  Q
    ||||| ||||||||||||||||| |||||||| |||||||||| |||||||||||||| |||||||||||||||||   | ||||||||||| || || |    
T  39399943 agacaagtcataaccaagagcatagtcaccggattttaaaatatgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaaaattttcc 39399847  T
Q  201 acacgagcaaccatggcatcagctaaacg 229  Q
    ||||||||||||| |||||||||||||||    
T  39399846 acacgagcaaccacggcatcagctaaacg 39399818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 101 - 226
Target Start/End: Complemental strand, 39168930 - 39168808
Alignment:
Q  101 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 200  Q
    ||||| ||||||||||||||||| |||||||| |||||||||| |||| |||||||| ||||||||||||||||||   | ||||||||||| ||||| |    
T  39168930 agacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg---tcattatttccaaaatcttcc 39168834  T
Q  201 acacgagcaaccatggcatcagctaa 226  Q
    ||||||||||||| ||||||||||||    
T  39168833 acacgagcaaccacggcatcagctaa 39168808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 40418474 - 40418404
Alignment:
Q  9 tgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtt 82  Q
    |||| ||||||||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||    
T  40418474 tgaagagcaacaactctaccattctcttc---ggcataactaatcttggtgatcaaaatggcagcaggaaggtt 40418404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 38987893 - 38987826
Alignment:
Q  12 acagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtt 82  Q
    ||||||||||||||||||||| | ||   |||||||||||||||| |||||||||||||||||||||||||    
T  38987893 acagcaacaactctaccattcacttc---ggcataactaatcttgctgatcaaaatggcagcaggaaggtt 38987826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 39726612 - 39726545
Alignment:
Q  12 acagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtt 82  Q
    ||||||||||||||||||||| | ||   |||||||||||||||| |||||||||||||||||||||||||    
T  39726612 acagcaacaactctaccattcacttc---ggcataactaatcttgctgatcaaaatggcagcaggaaggtt 39726545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 39880008 - 39879941
Alignment:
Q  12 acagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtt 82  Q
    ||||||||||||||||||||| | ||   |||||||||||||||| |||||||||||||||||||||||||    
T  39880008 acagcaacaactctaccattcacttc---ggcataactaatcttgctgatcaaaatggcagcaggaaggtt 39879941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 1163615 - 1163676
Alignment:
Q  8 ctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatgg 69  Q
    |||||||| |||||||||||||||||||||||  ||| ||||||||||||| ||||||||||    
T  1163615 ctgaacaggaacaactctaccattctcctctttagcaaaactaatcttggtaatcaaaatgg 1163676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 1850124 - 1850063
Alignment:
Q  8 ctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatgg 69  Q
    |||||||| || ||||||||||||||||||||  ||| ||||||||||||| ||||||||||    
T  1850124 ctgaacaggaataactctaccattctcctctttagcaaaactaatcttggtaatcaaaatgg 1850063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 101 - 230
Target Start/End: Original strand, 25912292 - 25912418
Alignment:
Q  101 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 200  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||   | |||||||||||||||||||    
T  25912292 agacaggtcataaccaagagcatggtcatcgggttttagaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaatatctttc 25912388  T
Q  201 acacgagcaaccatggcatcagctaaacga 230  Q
    |||||||||||||   ||||||||||||||    
T  25912389 acacgagcaaccacatcatcagctaaacga 25912418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 44444772 - 44444838
Alignment:
Q  107 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagtt 173  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44444772 gtcataaccaagagcatagtcaccaggttttaaaatacgaccaagatgagtcttgatttgaaaagtt 44444838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 25912181 - 25912252
Alignment:
Q  8 ctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtt 82  Q
    ||||||||||||||||||||||||||| ||   |||||||||||||||||||||||||||||||||| |||||||    
T  25912181 ctgaacagcaacaactctaccattctcttc---ggcataactaatcttggtgatcaaaatggcagcatgaaggtt 25912252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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