View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1696-Insertion-17 (Length: 852)
Name: NF1696-Insertion-17
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696-Insertion-17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 805; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 805; E-Value: 0
Query Start/End: Original strand, 8 - 852
Target Start/End: Complemental strand, 45513506 - 45512662
Alignment:
| Q |
8 |
gagtaagtttcccaaagatgaaaaaccacggcggaaccgatgtgaaattgtttgtcgaaaggtagagggattcaatggaggtcatgttttgaaaaccctc |
107 |
Q |
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| T |
45513506 |
gagtaagtttcccaaagatgaaaaaccacggcggaaccgatgtgaaattgtttgtcgaaaggtagagggattcaatggaggtcatgttttgaaaaccctc |
45513407 |
T |
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| Q |
108 |
aggaattggaccgtaaagcctgttatattcaagatcaagatacacaagctttcttaggttattgaacgaaaatgatgaacctgaatcaagatagttgtag |
207 |
Q |
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| T |
45513406 |
aggaattggaccgtaaagcctgttatattcaagatcaagatacaaaagctttcttaggttattgaacgaaaatgatgaacctgaatcaagatagttgtag |
45513307 |
T |
|
| Q |
208 |
taaatactgagatgaaccagggatgacaagttcgtgaaagcatgaggtatttgaccataaagcccattgtaagaaaggtcaagaagggtaagtttctcaa |
307 |
Q |
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| T |
45513306 |
taaatactgagatgcaccagggatgacaagttcgtgaaagcatgaggtatttgaccataaagcccattataagaaaggtcaagaagggtaagtttctcaa |
45513207 |
T |
|
| Q |
308 |
agtgactgaaccataatggaatagaagtgaaattatttccagaaaggtagagtgattcaatggaagtcatgtttccaaaagactcaggaatcggaccatg |
407 |
Q |
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| T |
45513206 |
agtgaccgaaccataatggaatagaagtgaaattatttccagaaaggtagagtgattcaatggaagtcatgtttccaaaagactcaggaatcggaccatg |
45513107 |
T |
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| Q |
408 |
aagctcatttgatgagagatcaagatagataggagatgtcatgttttggaaagcataacgaggaatgagtgaattgtcaactctacatccagacagtgaa |
507 |
Q |
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| T |
45513106 |
aagctcatttgatgagagatcaagatagataagagatgtcatgttttggaaagcataacgaggaatgagtgaattgtcaactctacatccagacagtgaa |
45513007 |
T |
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| Q |
508 |
agatttaataaagaaggaagtgtattgagtacctggaacaagttgcgcttgtcattgagacgaataccactcaagtcaaggtgtttgagtgagtgaaggt |
607 |
Q |
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| T |
45513006 |
agatttaataaagaaggaagtgtattgagtacctggaacaagttgcgcgtgtcattgagacgaataccactcaagtcaaggtgtttgagtgagtgaaggt |
45512907 |
T |
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| Q |
608 |
ttgaaatccaactggtgtcgtcatccatttgtaattctctctcttcaaattgcgtaaggtaatagtaattgaagctgagatcaaggaattgtaggttctt |
707 |
Q |
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| T |
45512906 |
ttgaaatccaactggtgccgtcatccatttgtaattctctctcttcaaattgcgtaaggtaatagtaattgaagctgagatcaaggaatcgtaggttctt |
45512807 |
T |
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| Q |
708 |
gagatttctgagactgttgggaatcctcccgctaagacgagcatgagacagagagagatgctcaaggcgtcccatggaacccaagaacataggaattgga |
807 |
Q |
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| T |
45512806 |
gagatttctgagactgttgggaatcctcccgctaagacgagcatgagacagagagagatactcaaggcgtcccatggaacccaagaacataggaattgga |
45512707 |
T |
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| Q |
808 |
ctcccactgaaattatttctagacaagtccaaataagtcaagtgt |
852 |
Q |
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| T |
45512706 |
ctcccactgaaattatttccagacaagtccaaataagtcaagtgt |
45512662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 752 - 850
Target Start/End: Original strand, 22848797 - 22848895
Alignment:
| Q |
752 |
gagacagagagagatgctcaaggcgtcccatggaacccaagaacataggaattggactcccactgaaattatttctagacaagtccaaataagtcaagt |
850 |
Q |
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|||| |||||||||| |||||| |||||||||||||| | ||||||||||||||||||| | |||||| ||||| || |||||||||||||||||||| |
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| T |
22848797 |
gagagagagagagatactcaagacgtcccatggaacctacgaacataggaattggactcaaattgaaatcatttccagtcaagtccaaataagtcaagt |
22848895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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