View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1696-Insertion-18 (Length: 720)

Name: NF1696-Insertion-18
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1696-Insertion-18
NF1696-Insertion-18
[»] chr2 (5 HSPs)
chr2 (7-176)||(15584957-15585126)
chr2 (563-711)||(15585568-15585716)
chr2 (7-100)||(15553913-15554006)
chr2 (267-480)||(15585232-15585443)
chr2 (488-525)||(15585486-15585523)
[»] chr3 (1 HSPs)
chr3 (552-662)||(23510029-23510139)
[»] chr4 (2 HSPs)
chr4 (550-662)||(4453836-4453947)
chr4 (566-662)||(22783330-22783426)
[»] chr6 (1 HSPs)
chr6 (566-624)||(31801004-31801062)
[»] chr1 (1 HSPs)
chr1 (550-631)||(11665612-11665693)
[»] chr8 (2 HSPs)
chr8 (566-645)||(4309455-4309534)
chr8 (61-122)||(13222527-13222588)


Alignment Details
Target: chr2 (Bit Score: 106; Significance: 1e-52; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 7 - 176
Target Start/End: Original strand, 15584957 - 15585126
Alignment:
Q  7 agataccacattctgccgccaacgtcacggggacaactttcacagattttattgttagttagttaatccataatagtgactaaaatgttagttaccgagt 106  Q
    |||||||||||| ||| ||||| ||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||  |||    
T  15584957 agataccacattttgctgccaatgtcacggagacaactttcatagattttcttgttagttagttaatccataatagtgaataaaatgttagttacaaagt 15585056  T
Q  107 tgttaaacttaggttaggtagttaagtatagttacttgttaatgacaagaaactatttaggatttcttgt 176  Q
    |||||| ||| |||||| | |||||||||||||||||| ||| ||||||||||||| |||||||||||||    
T  15585057 tgttaagctttggttagttggttaagtatagttacttgataacgacaagaaactatataggatttcttgt 15585126  T

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Target: chr2; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 563 - 711
Target Start/End: Original strand, 15585568 - 15585716
Alignment:
Q  563 agtttaatatgtgtttagacatcatgagtagttaaacctctctagattaattcatgaaagag-aagcttcatgtgattgtttgattcatgtaacttaaaa 661  Q
    ||||||||||||| ||||||||||||||||| |||| | ||||||||||  |||||||| || ||||||||||| ||||||||||||||||||||| |||    
T  15585568 agtttaatatgtgcttagacatcatgagtagctaaaacactctagattagatcatgaaaaagaaagcttcatgtaattgtttgattcatgtaactttaaa 15585667  T
Q  662 ttatttctgtgaatttagttggttgctttaatcgttttattcaattatac 711  Q
    |||||| |||||||||||||||||||||| ||| ||||||||||||||||    
T  15585668 ttattt-tgtgaatttagttggttgcttttatcattttattcaattatac 15585716  T

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Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 15553913 - 15554006
Alignment:
Q  7 agataccacattctgccgccaacgtcacggggacaactttcacagattttattgttagttagttaatccataatagtgactaaaatgttagtta 100  Q
    |||||||||||| ||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  15553913 agataccacattatgccgccaacgtcacggagacaactttcacggattttcttgttagttagttaatccataatagtgaataaaatgttagtta 15554006  T

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Target: chr2; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 267 - 480
Target Start/End: Original strand, 15585232 - 15585443
Alignment:
Q  267 gaagaaattgccaagttcagccattgttaagatcgcgttgccgactatcgaccccacatcatgagcaactgatgaagaaaagaacaaaattggccaccgt 366  Q
    |||||||||||||||||||||||||||||||||| |||||  | |||| |||||||| ||| |||||| |||||||||||| |||| ||| ||||  |||    
T  15585232 gaagaaattgccaagttcagccattgttaagatcacgttgttggctattgaccccacttcacgagcaattgatgaagaaaacaacagaatcggcc-tcgt 15585330  T
Q  367 caaggttcgcgtcgcgatatatatcttctcatgtcttaggctgaccttccctaaatttatgggaaactcgcgcctatataaggctcacccctaggtcagt 466  Q
    ||||||| ||||||| |||||||||||||  |||| | ||| ||| || || ||| || || ||||| ||||||| || |||| | |||||||||||| |    
T  15585331 caaggtttgcgtcgcaatatatatcttctagtgtcgtcggccgacttttccaaaaattttgcgaaacgcgcgcct-tacaaggttgacccctaggtcaat 15585429  T
Q  467 cagaagacaacttt 480  Q
     |||||||| ||||    
T  15585430 gagaagacaccttt 15585443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 488 - 525
Target Start/End: Original strand, 15585486 - 15585523
Alignment:
Q  488 gagagattcaaagcacctcttgagcagggaatcatcac 525  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  15585486 gagagattcaaagcacctctagagcaaggaatcatcac 15585523  T

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Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 552 - 662
Target Start/End: Complemental strand, 23510139 - 23510029
Alignment:
Q  552 tttattcatagagtttaatatgtgtttagacatcatgagtagttaaacctctctagattaattcatgaaagagaagcttcatgtgattgtttgattcatg 651  Q
    |||||||||| |||||||||||||||||||||||| |||||  |||||||||||||  ||  ||||||||||  |||||| ||| ||||||||| |||||    
T  23510139 tttattcatatagtttaatatgtgtttagacatcacgagtaactaaacctctctaggctagatcatgaaagaagagcttcttgtaattgtttgaatcatg 23510040  T
Q  652 taacttaaaat 662  Q
    |||||| ||||    
T  23510039 taactttaaat 23510029  T

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Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 550 - 662
Target Start/End: Complemental strand, 4453947 - 4453836
Alignment:
Q  550 tgtttattcatagagtttaatatgtgtttagacatcatgagtagttaaacctctctagattaattcatgaaagagaagcttcatgtgattgtttgattca 649  Q
    |||||||| ||| |||||||||| |||||||||||||||||||| |||| ||||||||| ||  |  ||||| || |||||||||| ||| ||||| |||    
T  4453947 tgtttatttatatagtttaatatatgtttagacatcatgagtagctaaatctctctagactaggtggtgaaa-aggagcttcatgtaattatttgaatca 4453849  T
Q  650 tgtaacttaaaat 662  Q
    |||||||| ||||    
T  4453848 tgtaactttaaat 4453836  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 566 - 662
Target Start/End: Original strand, 22783330 - 22783426
Alignment:
Q  566 ttaatatgtgtttagacatcatgagtagttaaacctctctagattaattcatgaaagagaagcttcatgtgattgtttgattcatgtaacttaaaat 662  Q
    |||||||||||||||| ||||||||||  ||||| ||| |||   |  |||||||||||||||||| ||| ||||||||| ||||||||||| ||||    
T  22783330 ttaatatgtgtttagatatcatgagtatctaaacttctataggccaggtcatgaaagagaagcttcctgtcattgtttgaatcatgtaactttaaat 22783426  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 566 - 624
Target Start/End: Complemental strand, 31801062 - 31801004
Alignment:
Q  566 ttaatatgtgtttagacatcatgagtagttaaacctctctagattaattcatgaaagag 624  Q
    ||||||| |||||||||||||||||||| ||||||||||||||| |  |||||||||||    
T  31801062 ttaatatatgtttagacatcatgagtagctaaacctctctagatcaggtcatgaaagag 31801004  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 550 - 631
Target Start/End: Original strand, 11665612 - 11665693
Alignment:
Q  550 tgtttattcatagagtttaatatgtgtttagacatcatgagtagttaaacctctctagattaattcatgaaagagaagcttc 631  Q
    ||||||||| || ||||||  ||||||||||| ||| |||||| |||||||||||||| |||  ||||||||||| ||||||    
T  11665612 tgtttattcgtatagtttagcatgtgtttagatatcctgagtaattaaacctctctaggttagatcatgaaagaggagcttc 11665693  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 566 - 645
Target Start/End: Complemental strand, 4309534 - 4309455
Alignment:
Q  566 ttaatatgtgtttagacatcatgagtagttaaacctctctagattaattcatgaaagagaagcttcatgtgattgtttga 645  Q
    ||||||| |||||||| ||||||| ||  |||||||||||||  ||  ||||||||||| |||||||||| |||||||||    
T  4309534 ttaatatatgtttagatatcatgaatatctaaacctctctaggctaggtcatgaaagaggagcttcatgtaattgtttga 4309455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 13222588 - 13222527
Alignment:
Q  61 ttagttagttaatccataatagtgactaaaatgttagttaccgagttgttaaacttaggtta 122  Q
    ||||||||| |||||||||||| || |||||||||||||||  || ||||||| || |||||    
T  13222588 ttagttagtcaatccataatagcgaataaaatgttagttacaaagctgttaaaatttggtta 13222527  T

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