View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1696-Insertion-2 (Length: 276)
Name: NF1696-Insertion-2
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696-Insertion-2 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 8 - 276
Target Start/End: Original strand, 47385416 - 47385684
Alignment:
| Q |
8 |
aaaacaagcccaacaaaaacaatggtggttggaatttccttgatgctctttcaaataatatatatcaaaacacatggaaaaaagaaaccacaacaaccac |
107 |
Q |
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| T |
47385416 |
aaaacaagcccaacaaaaacaatggtggttggaatttccttgatggtctttcaaataatatatatcaaaacacatggaaaaaagaaaccacaacaaccac |
47385515 |
T |
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| Q |
108 |
ctatgtgcatcctcaacagaaacgttcatctttggctatgagtccaaagagccttgaattatgtacggagaatcttggtaatgagagtggcactgacatt |
207 |
Q |
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| T |
47385516 |
ctatgtgcatcctcaacagaaacgttcctctttggctatgagtccaaagagccttgaattatgtacggagaatcttggtaatgaaagtggcactgacatt |
47385615 |
T |
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| Q |
208 |
gtagaaaatgacatgttgttgtcttcaatgggagcaatggaggagcaaagagaaccttgtagtccagta |
276 |
Q |
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| T |
47385616 |
gtagaaaatgacatgttgttgtcttcaatgggagcaatggaggagcaaagagaaccttgtagtccagta |
47385684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 25 - 249
Target Start/End: Complemental strand, 47373496 - 47373272
Alignment:
| Q |
25 |
aacaatggtggttggaatttccttgatgctctttcaaataatatatatcaaaacacatggaaaaaagaaaccacaacaaccacctatgtgcatcctcaac |
124 |
Q |
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| T |
47373496 |
aacaatggtggttggaacttccttgacgctctttccaataatatagctcaaaacacatcaaaaaaagaaaccacaacagccacctatcttccccctcagc |
47373397 |
T |
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| Q |
125 |
agaaacgttcatctttggctatgagtccaaagagccttgaattatgtacggagaatcttggtaatgagagtggcactgacattgtagaaaatgacatgtt |
224 |
Q |
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| T |
47373396 |
agaagtgttcctctttggttctgagtccaaagagtcttgaattgtgcacagaaaatcttggcaacgagagtggtactgacattgtagaaaacgacttatt |
47373297 |
T |
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| Q |
225 |
gttgtcttcaatgggagcaatggag |
249 |
Q |
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| T |
47373296 |
gttgtcttcaatgggaacaatggag |
47373272 |
T |
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