View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1696-Insertion-20 (Length: 350)

Name: NF1696-Insertion-20
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1696-Insertion-20
NF1696-Insertion-20
[»] chr3 (1 HSPs)
chr3 (45-350)||(15761959-15762264)
[»] chr5 (1 HSPs)
chr5 (46-348)||(5671989-5672289)
[»] chr7 (3 HSPs)
chr7 (46-348)||(13342432-13342733)
chr7 (46-348)||(13331517-13331818)
chr7 (59-165)||(33430229-33430336)
[»] chr2 (2 HSPs)
chr2 (45-333)||(26661358-26661646)
chr2 (59-165)||(6049931-6050037)
[»] chr6 (3 HSPs)
chr6 (45-334)||(21481275-21481564)
chr6 (45-177)||(19701165-19701298)
chr6 (246-348)||(19701019-19701122)
[»] chr8 (2 HSPs)
chr8 (45-348)||(32717808-32718112)
chr8 (45-348)||(10637482-10637786)
[»] chr1 (2 HSPs)
chr1 (45-348)||(22893637-22893941)
chr1 (59-165)||(44306148-44306253)
[»] scaffold0586 (2 HSPs)
scaffold0586 (45-177)||(9598-9731)
scaffold0586 (242-343)||(9457-9559)
[»] chr4 (1 HSPs)
chr4 (59-165)||(13893703-13893809)


Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 45 - 350
Target Start/End: Original strand, 15761959 - 15762264
Alignment:
Q  45 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaa 144  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15761959 cagagaaaatataccaatcaccaaatctatgttgagtaatagaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaa 15762058  T
Q  145 ttagcaaacagttgatgaacatacaaagatcataggatgttttttatatagaagaagatgagtgaaaatgtttagagggaatcagagaaaaagaatggcg 244  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||     
T  15762059 ttagcaaatagttgatgaacatacaaagatcatatgatgttttttatatagaagaacatgagtgaaaatgtttagtgggaatcagagaaaaagaatggca 15762158  T
Q  245 ggaatgacaaggacaaaaatggtattttattgaagatcatggtttccattccatgggaataaaactttcccaagctatttcatgggaatagaagggatga 344  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15762159 cgaatgacaaggacaaaaatggtattttattgaagatcatggtttccattccatgggaataaatctttcccaagctatttcatgggaatagaagggatga 15762258  T
Q  345 aaaata 350  Q
    ||||||    
T  15762259 aaaata 15762264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 46 - 348
Target Start/End: Original strand, 5671989 - 5672289
Alignment:
Q  46 agagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaat 145  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||||| |  |||    
T  5671989 agagaaattttaccaatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaat 5672088  T
Q  146 tagcaaacagttgatgaacatacaaagatcataggatgttttttatatagaagaagatgagtgaaaatgtttagagggaatcagagaaaaagaatggcgg 245  Q
     ||||| ||||||||||||| ||||||||||| || | | |||||||||||| || ||| |||||||||||||| |||||||||||  ||||||| ||||    
T  5672089 cagcaagcagttgatgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatcagag--aaagaatagcgg 5672186  T
Q  246 gaatgacaaggacaaaaatggtattttattgaagatcat-ggtttccattccatgggaataaaactttcccaagctatttcatgggaatagaagggatga 344  Q
    ||||||||||| |||||||||| |||||||||||||||| |||||| ||||| ||||||| |||||||||||||||||||||||||||||||| |||||     
T  5672187 gaatgacaagggcaaaaatggttttttattgaagatcatgggtttcaattcc-tgggaatgaaactttcccaagctatttcatgggaatagaatggatgg 5672285  T
Q  345 aaaa 348  Q
    ||||    
T  5672286 aaaa 5672289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 166; Significance: 8e-89; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 46 - 348
Target Start/End: Original strand, 13342432 - 13342733
Alignment:
Q  46 agagaaattata-ccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaa 144  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||||| |  ||    
T  13342432 agagaaattttatccaatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaa 13342531  T
Q  145 ttagcaaacagttgatgaacatacaaagatcataggatgttttttatatagaagaagatgagtgaaaatgtttagagggaatcagagaaaaagaatggcg 244  Q
    | ||||| ||||||||||||| ||||||||||| || | | |||||||||||| || ||| |||||||||||||| |||||||||||  ||||||| |||    
T  13342532 tcagcaagcagttgatgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatcagag--aaagaatagcg 13342629  T
Q  245 ggaatgacaaggacaaaaatggtattttattgaagatcat-ggtttccattccatgggaataaaactttcccaagctatttcatgggaatagaagggatg 343  Q
    |||||||||||| |||||||||| |||||||||||||||| |||||| ||||| ||||||| |||||||||||||||||||||||||||||||| |||||    
T  13342630 ggaatgacaagggcaaaaatggttttttattgaagatcatgggtttcaattcc-tgggaatgaaactttcccaagctatttcatgggaatagaatggatg 13342728  T
Q  344 aaaaa 348  Q
     ||||    
T  13342729 gaaaa 13342733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 46 - 348
Target Start/End: Original strand, 13331517 - 13331818
Alignment:
Q  46 agagaaattata-ccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaa 144  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||||| |  ||    
T  13331517 agagaaattttatccaatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaa 13331616  T
Q  145 ttagcaaacagttgatgaacatacaaagatcataggatgttttttatatagaagaagatgagtgaaaatgtttagagggaatcagagaaaaagaatggcg 244  Q
    | ||||| ||||||||||||| ||||||||||| || | | |||||||||||| || ||| |||||||||||||| |||||||||||  ||||||| |||    
T  13331617 tcagcaagcagttgatgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatcagag--aaagaatagcg 13331714  T
Q  245 ggaatgacaaggacaaaaatggtattttattgaagatcat-ggtttccattccatgggaataaaactttcccaagctatttcatgggaatagaagggatg 343  Q
    |||||| ||||| |||||||||| |||||||||||||||| |||||| ||||| ||||||| |||||||||||||||||||||||||||||||| |||||    
T  13331715 ggaatggcaagggcaaaaatggttttttattgaagatcatgggtttcaattcc-tgggaatgaaactttcccaagctatttcatgggaatagaatggatg 13331813  T
Q  344 aaaaa 348  Q
     ||||    
T  13331814 gaaaa 13331818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 165
Target Start/End: Original strand, 33430229 - 33430336
Alignment:
Q  59 caatcaccaaatctatgttgagtaatggaagaattgagatgaaa-ttagatggtactttgaaaagaatagtgaaa-tcaaaacccaaattagcaaacagt 156  Q
    |||||| |||||||| ||||||||||||||  ||| | |  ||| ||||||||||| ||||| |||||||||||| |||||| ||||| ||||||||| |    
T  33430229 caatcatcaaatctacgttgagtaatggaacgattaaaaaaaaaattagatggtaccttgaagagaatagtgaaattcaaaatccaaa-tagcaaacact 33430327  T
Q  157 tgatgaaca 165  Q
    |||||||||    
T  33430328 tgatgaaca 33430336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 45 - 333
Target Start/End: Complemental strand, 26661646 - 26661358
Alignment:
Q  45 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaa 144  Q
    ||||||| | ||| |||||||||||||||||||||||||||||||||||  |||||||||||||| ||| ||||| |||| ||||||||||||| || ||    
T  26661646 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaa 26661547  T
Q  145 ttagcaaacagttgatgaacatacaaagatcataggatgttttttatatagaagaagatgagtgaaaatgtttagagggaatcagagaaaaagaatggcg 244  Q
    || |||| ||||||||| ||| ||||||||||| || |  |||||||| |||| |  ||| |||||||||||||| |||||||||||||||||||| |||    
T  26661546 ttggcaagcagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcg 26661447  T
Q  245 ggaatgacaaggacaaaaatggtattttattgaagatcatggtttccattccatgggaataaaactttcccaagctatttcatgggaat 333  Q
    |||||| |||||  | ||  |||||||| ||| ||||||||||||  ||||| ||| ||||||||||||||| ||||| |||| |||||    
T  26661446 ggaatggcaagggtagaagaggtattttgttggagatcatggtttttattccctggaaataaaactttcccatgctatctcattggaat 26661358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 165
Target Start/End: Complemental strand, 6050037 - 6049931
Alignment:
Q  59 caatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaacagttg 158  Q
    ||||||||||||||||||||||||||||||||||||| | |||||| |||||||| ||||| |||| ||||||||| | | ||||| |||||| ||||||    
T  6050037 caatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaagcagttg 6049938  T
Q  159 atgaaca 165  Q
    |||||||    
T  6049937 atgaaca 6049931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 45 - 334
Target Start/End: Complemental strand, 21481564 - 21481275
Alignment:
Q  45 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaa 144  Q
    ||||||| | ||| |||||||||||||||||||||||||||||||||||  |||||||||||||| ||| ||||| |||| ||||||||||||| || ||    
T  21481564 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgttaccttgaatagaagagtgaaatcaaaaacccaa 21481465  T
Q  145 ttagcaaacagttgatgaacatacaaagatcataggatgttttttatatagaagaagatgagtgaaaatgtttagagggaatcagagaaaaagaatggcg 244  Q
    || ||||  |||||||| ||| ||||||||||| || |  |||||||| |||| |  ||| |||||||||||||| |||||||||||||||||||| ||     
T  21481464 ttggcaagtagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagca 21481365  T
Q  245 ggaatgacaaggacaaaaatggtattttattgaagatcatggtttccattccatgggaataaaactttcccaagctatttcatgggaata 334  Q
    |||||| |||||  | ||  |||||||| ||| ||||||||||||  ||||  ||||||||||||||||||| ||||| ||| |||||||    
T  21481364 ggaatggcaagggtagaagaggtattttgttggagatcatggtttttattctctgggaataaaactttcccatgctatctcaggggaata 21481275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 19701298 - 19701165
Alignment:
Q  45 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatc-aaaacccaa 143  Q
    ||||||||| |||  ||||| |||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |||| ||||||||| ||||| |||    
T  19701298 cagagaaatgatataaatcaacaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaaaagtgaaatccaaaactcaa 19701199  T
Q  144 attagcaaacagttgatgaaca-tacaaagatcat 177  Q
    || ||||| ||||||||||||| ||||||||||||    
T  19701198 at-agcaagcagttgatgaacactacaaagatcat 19701165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 246 - 348
Target Start/End: Complemental strand, 19701122 - 19701019
Alignment:
Q  246 gaatgacaaggacaaaaatggtattttattgaagatcatgg-tttccattccatgggaataaaactttcccaagctatttcatgggaatagaagggatga 344  Q
    ||||| |||||  ||| ||||||||||||| |||||||||| |||||||| | ||||||||||||||||||||||||| || |||||||| ||||||||     
T  19701122 gaatggcaagggaaaatatggtattttattcaagatcatgggtttccatttcctgggaataaaactttcccaagctatctcttgggaataaaagggatgg 19701023  T
Q  345 aaaa 348  Q
    ||||    
T  19701022 aaaa 19701019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 45 - 348
Target Start/End: Original strand, 32717808 - 32718112
Alignment:
Q  45 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaat-caaaacccaa 143  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |||| |||||||| |||||| |||    
T  32717808 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaa 32717907  T
Q  144 attagcaaacagttgatgaaca-tacaaagatcataggatgttttttatatagaagaagatgagtgaaaatgtttagagggaat--cagagaaaaagaat 240  Q
    |  ||||| ||||||||||||| ||||||||| || || | | |||| |||||||||  ||| |||||||   |||| ||||||  ||||||||||   |    
T  32717908 a-cagcaagcagttgatgaacactacaaagataat-gggtttcttttttatagaagatcatgggtgaaaa-aattagcgggaatagcagagaaaaa-ttt 32718003  T
Q  241 ggcgggaatgacaaggacaaaaatggtattttattgaagatcat-ggtttccattccatgggaataaaactttcccaagctatttcatgggaatagaagg 339  Q
     ||||||||| ||||| |||| ||||||||||||| |||||||| |||||||||| | |||||||||||||||||||||| || ||||||||||| ||||    
T  32718004 agcgggaatggcaagggcaaatatggtattttattcaagatcatgggtttccatttcctgggaataaaactttcccaagccatctcatgggaataaaagg 32718103  T
Q  340 gatgaaaaa 348  Q
    |||| ||||    
T  32718104 gatggaaaa 32718112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 45 - 348
Target Start/End: Complemental strand, 10637786 - 10637482
Alignment:
Q  45 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatc-aaaacccaa 143  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||||| | ||||||||||||| ||| ||||| |||| ||||||||| ||||| |||    
T  10637786 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatgataccttgaagagaagagtgaaatccaaaactcaa 10637687  T
Q  144 attagcaaacagttgatgaaca-tacaaagatcataggatgttttttatatagaagaagatgagtgaaaatgtttagagggaat--cagagaaaaagaat 240  Q
    |  ||||| ||||||||||||| ||||||||| || || |  ||||| |||||||||  ||| |||||||  || || ||||||  ||||||||||   |    
T  10637686 ac-agcaagcagttgatgaacactacaaagataatgggtttcttttt-tatagaagatcatgggtgaaaaaatt-agcgggaatagcagagaaaaatt-t 10637591  T
Q  241 ggcgggaatgacaaggacaaaaatggtattttattgaagatcatgg-tttccattccatgggaataaaactttcccaagctatttcatgggaatagaagg 339  Q
     ||||||||| ||||| |||| ||||||||||||| ||| |||||| |||||||| | ||||||||||||||||||||||||| ||||||||||| ||||    
T  10637590 agcgggaatggcaagggcaaatatggtattttattcaagttcatgggtttccatttcctgggaataaaactttcccaagctatctcatgggaataaaagg 10637491  T
Q  340 gatgaaaaa 348  Q
    |||| ||||    
T  10637490 gatggaaaa 10637482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 45 - 348
Target Start/End: Complemental strand, 22893941 - 22893637
Alignment:
Q  45 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaat-caaaacccaa 143  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||||| | ||||||||||||| ||| ||||| |||| |||||||| |||||| |||    
T  22893941 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatgttaccttgaagagaagagtgaaatccaaaactcaa 22893842  T
Q  144 attagcaaacagttgatgaaca-tacaaagatcataggatgttttttatatagaagaagatgagtgaaaatgtttagagggaat--cagagaaaaagaat 240  Q
    |  ||||| ||||||||||||| |||||||||||| || | |  ||| |||||||||  ||| |||||||   |||| ||||||  ||||||||||   |    
T  22893841 a-cagcaagcagttgatgaacactacaaagatcat-gggtttcctttttatagaagatcatgggtgaaaa-aattagcgggaatagcagagaaaaa-ttt 22893746  T
Q  241 ggcgggaatgacaaggacaaaaatggtattttattgaagatcat-ggtttccattccatgggaataaaactttcccaagctatttcatgggaatagaagg 339  Q
     ||||||||| |||||  ||| ||||||||||||| |||||||| |||||||||| | ||||||||||||||||||||||||| ||||||||||| ||||    
T  22893745 agcgggaatggcaagggaaaatatggtattttattcaagatcatgggtttccatttcctgggaataaaactttcccaagctatctcatgggaataaaagg 22893646  T
Q  340 gatgaaaaa 348  Q
    |||| ||||    
T  22893645 gatggaaaa 22893637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 59 - 165
Target Start/End: Complemental strand, 44306253 - 44306148
Alignment:
Q  59 caatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaacagttg 158  Q
    |||| |||||||||||||||||||||||||||||||| | | |||| |||||||| ||||| |||| ||||||||| | | ||||| |||||| ||||||    
T  44306253 caatgaccaaatctatgttgagtaatggaagaattgaaaag-aatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaagcagttg 44306155  T
Q  159 atgaaca 165  Q
    |||||||    
T  44306154 atgaaca 44306148  T

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Target: scaffold0586 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 9731 - 9598
Alignment:
Q  45 cagagaaattataccaatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaat-caaaacccaa 143  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |||| |||||||| |||||| |||    
T  9731 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaa 9632  T
Q  144 attagcaaacagttgatgaaca-tacaaagatcat 177  Q
    |  | ||| ||||||||||||| ||||||||||||    
T  9631 a-caacaagcagttgatgaacactacaaagatcat 9598  T

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Target: scaffold0586; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 242 - 343
Target Start/End: Complemental strand, 9559 - 9457
Alignment:
Q  242 gcgggaatgacaaggacaaaaatggtattttattgaagatcatgg-tttccattccatgggaataaaactttcccaagctatttcatgggaatagaaggg 340  Q
    ||||||||| |||||  ||| ||||||||||||| |||||||||| |||||||| | ||||||||||||||||||||||||| ||||||||||| |||||    
T  9559 gcgggaatggcaagggaaaatatggtattttattcaagatcatgggtttccatttcctgggaataaaactttcccaagctatctcatgggaataaaaggg 9460  T
Q  341 atg 343  Q
    |||    
T  9459 atg 9457  T

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Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 59 - 165
Target Start/End: Original strand, 13893703 - 13893809
Alignment:
Q  59 caatcaccaaatctatgttgagtaatggaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaacagttg 158  Q
    ||||||||||||||||||||||||||||||||||||| | |||||| |||||||| ||||| |||| ||||||||| | | ||||| || ||| ||||||    
T  13893703 caatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaataacaagcagttg 13893802  T
Q  159 atgaaca 165  Q
    |||||||    
T  13893803 atgaaca 13893809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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