View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1696-Insertion-22 (Length: 433)
Name: NF1696-Insertion-22
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696-Insertion-22 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 8 - 432
Target Start/End: Complemental strand, 21983319 - 21982872
Alignment:
| Q |
8 |
ccaacaagctagaggagaaatcagagagcaaactcctcaagtttttgggttttatgtggaatccattatcatgggtcatggaggcagctgcaatcatggc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21983319 |
ccaacaagctagaggagaaatcagagagcaaactcctcaagtttttgggttttatgtggaatccattatcatgggtcatggaggcagctgcaatcatggc |
21983220 |
T |
|
| Q |
108 |
cattgtattggccaatggaggggtatgt----gattgagattatttgcaaatgtttcatttttctaagttgttatgtgacacatatat------------ |
191 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21983219 |
cattgtattggccaatggaggggtatgtatgcgattgagattatttacaaatgtttcatttttctaagttgttatgtgacacatatatactcgtatgcat |
21983120 |
T |
|
| Q |
192 |
----tgataacagggaaaaccgccggattggcaagatttcactggtattatggtgttgcttatcattaactcaacgattaatttcattgaggaaaacaat |
287 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
21983119 |
atattgataacagggaaaaccaccggattggcaagatttcactggtattatggtgttgcttatcattaactcaacgattagtttcattgaggaaaacaat |
21983020 |
T |
|
| Q |
288 |
gccggaaatgctgcagctgctttgatggccggtcttgcccccaaaaccaaggtaacttttgttattacatgt---tatgatctattagcattcaatagct |
384 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | | ||||||||||||||||||||||||| |
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| T |
21983019 |
gctggaaatgctgcagctgctttgatggccggtcttgccccaaaaaccaaggtaacttttgttattacttattcatatgatctattagcattcaatagct |
21982920 |
T |
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| Q |
385 |
aacaagaactaagcaattttaattttgtaggtgttgagggatggaaaa |
432 |
Q |
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| T |
21982919 |
aacaagaactaagcaattttaattttgtaggtgttgagggatggaaaa |
21982872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 213 - 341
Target Start/End: Complemental strand, 45200051 - 45199923
Alignment:
| Q |
213 |
gattggcaagatttcactggtattatggtgttgcttatcattaactcaacgattaatttcattgaggaaaacaatgccggaaatgctgcagctgctttga |
312 |
Q |
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|||||||| ||||| ||| ||||||| |||||||||||||||||||| |||| ||| || || ||||||||||| ||||||||||| || || | | |
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| T |
45200051 |
gattggcaggattttgttggaattatggccttgcttatcattaactcaaccattagttttatagaagaaaacaatgctggaaatgctgctgcagcactta |
45199952 |
T |
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| Q |
313 |
tggccggtcttgcccccaaaaccaaggta |
341 |
Q |
| |
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|||| |||||||| ||||||||||||||| |
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| T |
45199951 |
tggctggtcttgctcccaaaaccaaggta |
45199923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 45200262 - 45200164
Alignment:
| Q |
34 |
agcaaactcctcaagtttttgggttttatgtggaatccattatcatgggtcatggaggcagctgcaatcatggccattgtattggccaatggaggggta |
132 |
Q |
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|||||| |||| || || ||||| |||||||||||||| | |||||||||||||| || ||||| |||||||| |||| |||||| |||||||||||| |
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| T |
45200262 |
agcaaattcctgaaattcttgggctttatgtggaatcccctctcatgggtcatggaagctgctgctatcatggctattgcattggcaaatggaggggta |
45200164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 15866276 - 15866322
Alignment:
| Q |
43 |
ctcaagtttttgggttttatgtggaatccattatcatgggtcatgga |
89 |
Q |
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||||||||| | || |||||||||||||||||||||||||| ||||| |
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| T |
15866276 |
ctcaagtttcttgggtttatgtggaatccattatcatgggtgatgga |
15866322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 195 - 342
Target Start/End: Complemental strand, 48439646 - 48439499
Alignment:
| Q |
195 |
taacagggaaaaccgccggattggcaagatttcactggtattatggtgttgcttatcattaactcaacgattaatttcattgaggaaaacaatgccggaa |
294 |
Q |
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||||||||||| || | ||||||||||||||| |||||| | |||||||| ||||| |||||||| |||| ||||||||| ||||||||||| || | |
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| T |
48439646 |
taacagggaaagccagcagattggcaagatttcgtaggtattgttgtgttgctcatcatcaactcaaccattagtttcattgaagaaaacaatgcaggca |
48439547 |
T |
|
| Q |
295 |
atgctgcagctgctttgatggccggtcttgcccccaaaaccaaggtaa |
342 |
Q |
| |
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|||| ||||| ||||| ||||| || ||||| |||||||||||||||| |
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| T |
48439546 |
atgccgcagcagctttaatggctggccttgcacccaaaaccaaggtaa |
48439499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 132
Target Start/End: Complemental strand, 48439885 - 48439763
Alignment:
| Q |
10 |
aacaagctagaggagaaatcagagagcaaactcctcaagtttttgggttttatgtggaatccattatcatgggtcatggaggcagctgcaatcatggcca |
109 |
Q |
| |
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|||||| ||||||||||| | || ||||| | || || || |||||||| |||||||||||| |||||||||| ||||||| ||||| | ||||||| |
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| T |
48439885 |
aacaagttagaggagaaaactgaaagcaagttacttaaattcttgggtttcatgtggaatccactatcatgggttatggaggttgctgcccttatggcca |
48439786 |
T |
|
| Q |
110 |
ttgtattggccaatggaggggta |
132 |
Q |
| |
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||| |||||| |||||||||||| |
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| T |
48439785 |
ttggattggcaaatggaggggta |
48439763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 1499377 - 1499297
Alignment:
| Q |
46 |
aagtttttgggttttatgtggaatccattatcatgggtcatggaggcagctgcaatcatggccattgtattggccaatgga |
126 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||| || ||||| ||||||||||||| ||||| |||||| |
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| T |
1499377 |
aagtttttgggttttatgtggaatcctttatcatgggttatggaagctgctgctatcatggccattgctttggctaatgga |
1499297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 1499225 - 1499153
Alignment:
| Q |
269 |
tttcattgaggaaaacaatgccggaaatgctgcagctgctttgatggccggtcttgcccccaaaaccaaggta |
341 |
Q |
| |
|
||||||||| |||||||||||||| ||||| || |||||| | ||||| ||| | || ||||||||||||||| |
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| T |
1499225 |
tttcattgaagaaaacaatgccggcaatgccgccgctgctctcatggctggtttagctcccaaaaccaaggta |
1499153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 1459366 - 1459445
Alignment:
| Q |
46 |
aagtttttgggttttatgtggaatccattatcatgggtcatggaggcagctgcaatcatggccattgtattggccaatgg |
125 |
Q |
| |
|
|||||||| |||||||||||||| || || |||||||| ||||| || ||||| || |||||||||| ||||| ||||| |
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|
| T |
1459366 |
aagtttttaggttttatgtggaaccctttgtcatgggttatggaagctgctgctattatggccattgctttggctaatgg |
1459445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 3151601 - 3151683
Alignment:
| Q |
46 |
aagtttttgggttttatgtggaatccattatcatgggtcatggaggcagctgcaatcatggccattgtattggccaatggagg |
128 |
Q |
| |
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||||||||||| |||||||||||||| | |||||||| ||||| || || ||||||||||| |||| |||||||||||||| |
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| T |
3151601 |
aagtttttgggatttatgtggaatcctctttcatgggtgatggaagctgcagcaatcatggctattgctttggccaatggagg |
3151683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 26787239 - 26787315
Alignment:
| Q |
49 |
tttttgggttttatgtggaatccattatcatgggtcatggaggcagctgcaatcatggccattgtattggccaatgg |
125 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| ||||| || ||||| || |||||||||| ||||| ||||| |
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| T |
26787239 |
tttttgggttttatgtggaaccctttatcatgggttatggaagctgctgctattatggccattgctttggctaatgg |
26787315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 975688 - 975622
Alignment:
| Q |
46 |
aagtttttgggttttatgtggaatccattatcatgggtcatggaggcagctgcaatcatggccattg |
112 |
Q |
| |
|
|||||||| || |||||||||||||| || |||||||| ||||| || ||||| ||||||||||||| |
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| T |
975688 |
aagtttttagggtttatgtggaatcctttgtcatgggttatggaagctgctgctatcatggccattg |
975622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 50273364 - 50273431
Alignment:
| Q |
58 |
tttatgtggaatccattatcatgggtcatggaggcagctgcaatcatggccattgtattggccaatgg |
125 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || ||||| || |||||||||| ||||| ||||| |
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| T |
50273364 |
tttatgtggaatccattatcatgggttatggaagctgctgctattatggccattgctttggctaatgg |
50273431 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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