View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1696-Insertion-23 (Length: 894)
Name: NF1696-Insertion-23
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696-Insertion-23 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 652; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 70 - 894
Target Start/End: Original strand, 30737111 - 30737919
Alignment:
| Q |
70 |
tttgatcacatgtgccagtttagtcaaataaagatctacacgatacatgaatctagactctatggaagcatctctatgctaggattcaacaaggcatctc |
169 |
Q |
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| T |
30737111 |
tttgttcacatgtgcaagtttagtcaaataaagatctacacgatacatgaatctaaactctatggaagcatctctatgctaggattcaacaaggaatggc |
30737210 |
T |
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| Q |
170 |
tctacatctggttgaacagaagttgcgttccccacaacggcaagtgcatccattcagtccaaggaatggcatcaagtagaaacaatggctaagaaatctg |
269 |
Q |
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| T |
30737211 |
a-tccatt--------cagaagttgcgttccccacaacggcaggtgcatcaattcagtccaaggaatggcatcaagtagaaacaatggctaagaaatctg |
30737301 |
T |
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| Q |
270 |
agtcatgtaatcgatcctctgatggaacaattgttcctctaattcaataatgaagggaagatcaaggttcctctaccccatcattggtttaattcagtaa |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30737302 |
agtcatgtaatcgatcctctgatggaacaattgttcctctaattcaataatgaagggaagatcaaggttcctctaccccatcattggtttaattcaggaa |
30737401 |
T |
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| Q |
370 |
aaaccaagtcgagcatttgtagaaaaatgcctggtctcgaatgttttaaatacatccgagccaacttacatctctcgatgtaaacactatgcaatgaatt |
469 |
Q |
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| T |
30737402 |
aaaccaagtcgagcatttgtagaaaaatgcctggtctcgaatgttttaaatacatccgagccaacttacat--------gtaaacactatggaatgaatt |
30737493 |
T |
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| Q |
470 |
catcattgaagcaaggacacaaaatctattggaagcctccaatacaaaagaagcatcatagatgttttatatacatc-atgttaaattatgccttgaccc |
568 |
Q |
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| T |
30737494 |
catccttgaagcaaggacacgaaatctattggaagcctccaatacaaaagaagtatcatagatgttttatatacatccatgttaacttatgccttgactc |
30737593 |
T |
|
| Q |
569 |
aagcataataagtcatgtctgtgaagatccttcactcagatatcagattcctccacttcagcatagagaaagactctatttaagtgtgtcaaatttgcat |
668 |
Q |
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| T |
30737594 |
aagcataataagtcatgtctgtgaagatccttcactcatatatcagactcgtccacttcagcatagagaaagcctctatttaagtgtgtcaaatttacat |
30737693 |
T |
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| Q |
669 |
caagaaataccttcttgataaatgcacaaacttgttgagattactacgtactcaatacaaaggaaaaatttccttttcaaaataaaaaaccctacaaaat |
768 |
Q |
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| T |
30737694 |
caagaaataccttcttgataaatgcagaaacttgttgagattactacgtactcaatacaaaggaaaaatttcctcttcaaaataaaaaaccctacaaaat |
30737793 |
T |
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| Q |
769 |
ttgtaggtactactccttccaatatggaaactctggttacatttcgagcctgatcctctcttgttataataacctggataaaatgatctttgaaaatcca |
868 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30737794 |
ttgtaggtactactccttccaatatggaaactctggttacatttcgagcctgatcctctcttgttataataacctggataaaatgatctttgaaaatcca |
30737893 |
T |
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| Q |
869 |
cttcttcaattaacttcaatcccaca |
894 |
Q |
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| T |
30737894 |
cttcttcaattaacttcaatcccaca |
30737919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 30736987 - 30737065
Alignment:
| Q |
6 |
cagtaacagtagaaaatcataaacatgtaagaaccaaatagtttct-------attcttttacattgatgttttgatca |
77 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| |
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| T |
30736987 |
cagtaacagtagaaaatcataaacatgtaagaaccaaatagttcctatggacaattctcttacattgatgttttgatca |
30737065 |
T |
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