View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1696-Insertion-3 (Length: 260)
Name: NF1696-Insertion-3
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696-Insertion-3 |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 40801647 - 40801899
Alignment:
| Q |
8 |
ggagcatcacaacaatgtttctgtaatggaaaaactaagattgtgatatttgatataggcagcaggactatgaaagccacatagagttggtgttggaacg |
107 |
Q |
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| T |
40801647 |
ggagcatcacaacaatgtttttgtaatggaaaaactaagattgtgatatttgatataggcagcaggactatgaaagccacatagagttggtgttggaacg |
40801746 |
T |
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| Q |
108 |
ttggtctttctcctttgaggaagagaaatgagaaaaggggaaggtttgtcgtccttggccaccgacgaaaagtatcaatgtgcatcaaggttctaccatt |
207 |
Q |
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| T |
40801747 |
ttggtctttctcctttgaggaagagaaatgagaaaaggggaaggtttgtcgtcattggccatcggcgaaaagtatcaatgtgcatcaaggttctaccatt |
40801846 |
T |
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| Q |
208 |
aatcaagaagaaagtgttcaaaatgattttctatttcatactatgatcaagta |
260 |
Q |
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| T |
40801847 |
aatcaagaaaaaagtgttcaaaatgattttctatttcatactatgatcaagta |
40801899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 18701385 - 18701133
Alignment:
| Q |
8 |
ggagcatcacaacaatgtttctgtaatggaaaaactaagattgtgatatttgatataggcagcaggactatgaaagccacatagagttggtgttggaacg |
107 |
Q |
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| T |
18701385 |
ggagcatcacaacaatgtttttgtaatggaaaatctaagattgtgatatttgatataggcagcaggactatgaaagccacatagagtcggtgttagaacg |
18701286 |
T |
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| Q |
108 |
ttggtctttctcctttgaggaagagaaatgagaaaaggggaaggtttgtcgtccttggccaccgacgaaaagtatcaatgtgcatcaaggttctaccatt |
207 |
Q |
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| T |
18701285 |
ttggtctttctcttgtgaggaagagaaatgagaaaaggggatggtttgtcgtccttggccaccggcgaaaagtatcaatgtgcatcaaggttctaccatt |
18701186 |
T |
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| Q |
208 |
aatcaagaagaaagtgttcaaaatgattttctatttcatactatgatcaagta |
260 |
Q |
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| T |
18701185 |
aatcaagaagaaagtgttcaaaatgattttctatttcatactatgatcaagta |
18701133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 116 - 260
Target Start/End: Original strand, 23126087 - 23126231
Alignment:
| Q |
116 |
tctcctttgaggaagagaaatgagaaaaggggaaggtttgtcgtccttggccaccgacgaaaagtatcaatgtgcatcaaggttctaccattaatcaaga |
215 |
Q |
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| T |
23126087 |
tctcctttgaggaagagaaatgagaaaaggggaaggtttgtcgtccttggccaccggcgaaaagtatcaatgtgcatcaaggttctaccattaatcaaga |
23126186 |
T |
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| Q |
216 |
agaaagtgttcaaaatgattttctatttcatactatgatcaagta |
260 |
Q |
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| T |
23126187 |
agaaagtattcaaaatgattttctatttcatattatgatcaagta |
23126231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 29633943 - 29633992
Alignment:
| Q |
206 |
ttaatcaagaagaaagtgttcaaaatgattttctatttcatactatgatc |
255 |
Q |
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| T |
29633943 |
ttaatcaagaagaaagtgctcaaaagcattttctatttcctactacgatc |
29633992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 40389878 - 40389927
Alignment:
| Q |
206 |
ttaatcaagaagaaagtgttcaaaatgattttctatttcatactatgatc |
255 |
Q |
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| T |
40389878 |
ttaatcaagaagaaagtgctcaaaagcattttctatttcctactacgatc |
40389927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 24864555 - 24864512
Alignment:
| Q |
211 |
caagaagaaagtgttcaaaatgattttctatttcatactatgat |
254 |
Q |
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| T |
24864555 |
caagaagaaagtgctcaaaaggattttctatttcttactatgat |
24864512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 24864685 - 24864640
Alignment:
| Q |
162 |
ttggccaccgacgaaaagtatcaatgtgcatcaaggttctaccatta |
208 |
Q |
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| T |
24864685 |
ttggccaccgacgaaa-gtaacaatttgcatcaaggttctaccatta |
24864640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 83654 - 83698
Alignment:
| Q |
206 |
ttaatcaagaagaaagtgttcaaaatgattttctatttcatacta |
250 |
Q |
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| T |
83654 |
ttaatcaagaagaaagtgctcaaaagcattttctatttcctacta |
83698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 151
Target Start/End: Complemental strand, 6508122 - 6508037
Alignment:
| Q |
64 |
aggcagcaggactatgaaagccacatagagttggtgttggaacgttggtctttctcctttgaggaagagaaatgagaaaaggggaagg |
151 |
Q |
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| T |
6508122 |
aggcagcagtactgtgacagccgcatagagtcggtgtggaaa--ttggtctttcgccttcgagatagagaaatgaaaaaaggggaagg |
6508037 |
T |
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