View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16960_high_1 (Length: 460)
Name: NF16960_high_1
Description: NF16960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16960_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 43256707 - 43256904
Alignment:
| Q |
1 |
attagggtttgaaaaatggaaaagagataggttctccccaatgtttgttggcttgttgtgtacatgttgtgttgactcctttagttttgattttcataca |
100 |
Q |
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| T |
43256707 |
attagggtttgaaaaatggaaaagggataggttctccccaatgtttgttggcttgttgtgtacatgttgtgttgactcctttagttttcattttcataca |
43256806 |
T |
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| Q |
101 |
gttaccacgtgcattatctcgtaccgacaatcacatcacaagatgccatttcattttatttttgagacaaggtgcgtcactatatagatcatcaccaa |
198 |
Q |
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| T |
43256807 |
gttaccacgtgcattatctcgtaccgacaatcacatcacaagatgccatttcattttatttttgagacaaggtgcgtcactatatagatcatcaccaa |
43256904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 293 - 440
Target Start/End: Original strand, 43257000 - 43257146
Alignment:
| Q |
293 |
gttcgtgttatttgcgcataaacaa-catattcagcatcatataatcnnnnnnngtgattattctactattgtacatgattgttcaaaccccttttttcc |
391 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43257000 |
gttcgtgttatttgcgcataaacaaacatattcagcatcatataatcaaaag--gtgattattctactattgtacatgattgttcaagccccttttttcc |
43257097 |
T |
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| Q |
392 |
cagaatcattcaattaaaatgtgatcatttacatgattgttcaaacctg |
440 |
Q |
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| T |
43257098 |
cagaatcattcaattaaaatgtgatcatttacatgattgtacaaacctg |
43257146 |
T |
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