View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16960_high_11 (Length: 224)
Name: NF16960_high_11
Description: NF16960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16960_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 40639177 - 40639370
Alignment:
| Q |
17 |
gaaggatggcttggacacattggtcaatatcaaaaaattgggattagcatgccaacaaatgtcattaaaagaagaagcaatgccaaaacaacttgaggta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
40639177 |
gaaggatggcttggacacattggtcaatatcacaaaattgggattagcatgccaacaaatgtcattagaagaagaggcaatgccaaaacaacttgaggta |
40639276 |
T |
|
| Q |
117 |
gtggccgactggattgcgaaactagaacaccttcaatcgctgagactaaaatcaagagatgaagaagggaaaccttggattttacctttgaagt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40639277 |
gtggccgactggattgcgaaactagaacaccttcaatcgctgagactaaaatcaagagatgaagaagggaaaccttggattttacctttgaagt |
40639370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 40626117 - 40625934
Alignment:
| Q |
17 |
gaaggatggcttggacacattggtcaatatcaaaaaattgggattagcatgccaacaaatgtcattaaaagaagaagcaatgccaaaacaacttgaggta |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||| | || |||||| || |||||||| || |
|
|
| T |
40626117 |
gaaggatggcttggacacattgatcaatatcacaaaattgggattagcatgccaatcaatgtcattacagccagcggcaatgataacacaacttgtggct |
40626018 |
T |
|
| Q |
117 |
gtggccgactggattgcgaaactagaacaccttcaatcgctgagactaaaatcaagagatgaagaagggaaaccttggatttta |
200 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40626017 |
gtggctgattggattgcgaaactagaacaccttcaatcactgagactaaaatcaagggatgaagaagggaaaccttggatttta |
40625934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 40659942 - 40660135
Alignment:
| Q |
17 |
gaaggatggcttggacacattggtcaatatcaaaaaattgggattagcatgccaacaaatgtcattaaaagaagaagcaatgccaaaacaacttgaggta |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||| |||| |||| |||||| | |||||||| |
|
|
| T |
40659942 |
gaaggatggcttggacagattggtcaatatcacaaaattgggattagcatgccaatcaatgtcactaaaccaagaggcaatgatagctcaacttgacacg |
40660041 |
T |
|
| Q |
117 |
gtggccgactggattgcgaaactagaacaccttcaatcgctgagactaaaatcaagagatgaagaagggaaaccttggattttacctttgaagt |
210 |
Q |
| |
|
|| || ||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||| ||||| ||||||| |
|
|
| T |
40660042 |
gtagcagactggattacgaaactagaacaccttcaatcgttgagactgaaatcaagagatgaagaaggtcgaccttggaatttacacttgaagt |
40660135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University