View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16960_high_2 (Length: 409)
Name: NF16960_high_2
Description: NF16960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16960_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 8379167 - 8378785
Alignment:
| Q |
18 |
agatattatttgacgaaaaagtatgttgaaaaaa-tagtagaaatggtgcatactgcgcagtggtaaagtagtgtgagcttctaggaaataggaaaacac |
116 |
Q |
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| T |
8379167 |
agatattatttgacgaaaaagtatgttgaaaaaaatagtagaaatggtgcatactgcatagtggtaaagtagtgtgagcttctaggaaataggaaaacac |
8379068 |
T |
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| Q |
117 |
aaaagacagtaatgccaaatttgagtgggaagcatcttagaaatttctcagtatatcgtgattgataatctacttctgcttttccgtacggtattgtgtt |
216 |
Q |
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| T |
8379067 |
aaaagacagtaatgccaaatttgagtgggaagcatcttagaaatttctcagtatatcgtgattgataatctacctctgcttt-ccgtacagtattgtgtt |
8378969 |
T |
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| Q |
217 |
ctcccctcgttagtgaccgaaacctcactaatacaatagaaccatcattttggaaaggaaaatgttttttcttacacccccgggttgtatacactatgac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8378968 |
ctcccctcgttagtgaccgaaacctcactaatacaatagaaccatcattttggaaaggaaaatgttttttcttacacccccgggttctatacactatgac |
8378869 |
T |
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| Q |
317 |
attgtatgcaccatgtggcggagagaaaaagatagatggaataaattggtgatgtgatataaatagagataataagagaataat |
400 |
Q |
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|||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8378868 |
attgtatgcaccatgtggcgaagagaaaaggatagatgggataaattggtgatgtgatataaatagagataataagagaataat |
8378785 |
T |
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