View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16960_low_1 (Length: 561)
Name: NF16960_low_1
Description: NF16960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16960_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 245 - 549
Target Start/End: Original strand, 51148642 - 51148949
Alignment:
| Q |
245 |
ccatctagcttgtatga-gattaattggaattaaaatttaataggtcaaattttcatcaagtttttccgacat-ctatatccaaaatctgagatgcaatt |
342 |
Q |
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| T |
51148642 |
ccatctagcttgtatgaagattaattggaattaaaatttaataggtcaaattttcatcaagtttttccgacattctatatccaaaatttgagatgcaatt |
51148741 |
T |
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| Q |
343 |
tctcccaactagaaagtcattacagtggtttgattaattaagaccccttatttctttaactctagatctaggtaaaaataacccataaactagaaagtca |
442 |
Q |
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| T |
51148742 |
tctcccaactagaaagtcattacagtggtttgattaattaagaccccttatttctttaattctaaatctagctaaaagtaacccataaactagaaagtca |
51148841 |
T |
|
| Q |
443 |
tggatagccataacgatgggttttcatattttcgtttgtaaaacagaaagnnnnnnnnnca-tttaatttcaatgatacaaccaaagaacacaaactgac |
541 |
Q |
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| T |
51148842 |
tggatagccataacgatgggttttcatattttcgcttgtaaaacaaagaaaaaaagaaacattttaatttcaatgatacaaccaaagaacacaaactgac |
51148941 |
T |
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| Q |
542 |
gagatatt |
549 |
Q |
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|||||||| |
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| T |
51148942 |
gagatatt |
51148949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 42 - 250
Target Start/End: Original strand, 51148321 - 51148526
Alignment:
| Q |
42 |
gtgagagatgagaggaattaatctcaacccttaaatctaaataaatggctgagattataatactcctcttttaattcactcgcacccttttcttgttcag |
141 |
Q |
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| T |
51148321 |
gtgagagatgaaaggaattaatctcaacccttaaatctaaataaatggctgagattacaatactcctcttttaattcactcgcacccttttcttgttcag |
51148420 |
T |
|
| Q |
142 |
acccacacttcaccttcctcctgtgccttcattccaagttcttttattccaaatcttcatggatttctgttttcacatagccaataaatctctcttctta |
241 |
Q |
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| T |
51148421 |
gctcacacttcacct---tcctgtgccttcattccaagttcttttattccaaatcttcacggatttctgttttcgcataggcaataaatctctcttctta |
51148517 |
T |
|
| Q |
242 |
cacccatct |
250 |
Q |
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| T |
51148518 |
cacccatct |
51148526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 42296501 - 42296419
Alignment:
| Q |
261 |
agattaattggaattaaaatttaataggtcaaattttcatcaagtttttccgac-atctatatccaaaatctgagatgcaatt |
342 |
Q |
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| T |
42296501 |
agattaattagaattggaatttaatgggtcaagttttcaccaagtttttccgacgttctttagccaagatctaagatgcaatt |
42296419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 310
Target Start/End: Original strand, 37673276 - 37673325
Alignment:
| Q |
261 |
agattaattggaattaaaatttaataggtcaaattttcatcaagtttttc |
310 |
Q |
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| T |
37673276 |
agattaattggaattgaaatttaatgggtgaagttttcaccaagtttttc |
37673325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 32948935 - 32949000
Alignment:
| Q |
48 |
gatgagaggaattaatctcaacccttaaatctaaataaatggctgagattataatactcctctttt |
113 |
Q |
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| T |
32948935 |
gatgagagggttaaatctcaacccttgaatgtaaataaatggtcgagattaaaatactcctttttt |
32949000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 9151000 - 9151065
Alignment:
| Q |
48 |
gatgagaggaattaatctcaacccttaaatctaaataaatggctgagattataatactcctctttt |
113 |
Q |
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||||||||| | |||||||||||||| || |||||||| ||||| ||||| ||||||||| |||| |
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| T |
9151000 |
gatgagagggttaaatctcaacccttagatgtaaataaacggctgtgattaaaatactcctttttt |
9151065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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