View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16960_low_11 (Length: 241)
Name: NF16960_low_11
Description: NF16960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16960_low_11 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 3 - 241
Target Start/End: Complemental strand, 44769624 - 44769386
Alignment:
| Q |
3 |
cacagataacaaaactggtttaaaacctaaaacaataattaactatttatcttactgcatccataagatccttgatttcagactccataagttctgatcc |
102 |
Q |
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| T |
44769624 |
cacagataacaaaactggtttaaaacctaaaacaataattaactatttatcttactgcatccataagatccttaatttcagactccataagttccgatcc |
44769525 |
T |
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| Q |
103 |
tactcgctgtaagccttcttttagctcatccaatgttatggttccactattgtcagcgtcaagcatcctaaataattctttcagaccaccaatttcttct |
202 |
Q |
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| T |
44769524 |
tactcgctgtaagccttcttttagctcatccaatgttatggttccactattgtcagcgtcaagcatcctaaataattctttcagaccaccaatttcttct |
44769425 |
T |
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| Q |
203 |
tcgttaagcctcttggcaataacctaggaataagtatac |
241 |
Q |
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| T |
44769424 |
tcgttaagcctcttggcaataacctaggaataagtatac |
44769386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 44760489 - 44760264
Alignment:
| Q |
14 |
aaactggtttaaaacctaaaacaataattaactatttatcttactgcatccataagatccttgatttcagactccataagttctgatcctactcgctgta |
113 |
Q |
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| T |
44760489 |
aaactggattaaaacctaaaacaataacgaattatatatcttactgcatccataagatccttgatttcagactccataagttcagatcctactcgcttta |
44760390 |
T |
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| Q |
114 |
agccttcttttagctcatccaatgttatggttccactattgtcagcgtcaagcatcctaaataattctttcagaccaccaatttcttcttcgttaagcct |
213 |
Q |
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| T |
44760389 |
agccttcttttaactcttccaatgttatagttccactattatcagcatcaagcatcctgaataactccttcaaaccaccaatttcttcctcagaaagcct |
44760290 |
T |
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| Q |
214 |
cttggcaataacctaggaataagtat |
239 |
Q |
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| T |
44760289 |
ctccgcaataacctgggaaaaagtat |
44760264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 53 - 231
Target Start/End: Complemental strand, 39943515 - 39943337
Alignment:
| Q |
53 |
cttactgcatccataagatccttgatttcagactccataagttctgatcctactcgctgtaagccttcttttagctcatccaatgttatggttccactat |
152 |
Q |
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| T |
39943515 |
cttacagcatccattagatcctggatttcagactccataagttcagatcctactcgctttaagccatcttttaactcatcaaatgttatggttccactgc |
39943416 |
T |
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| Q |
153 |
tgtcagcgtcaagcatcctaaataattctttcagaccaccaatttcttcttcgttaagcctcttggcaataacctagga |
231 |
Q |
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| T |
39943415 |
tgtctgtgtcaatcatcttgaataactctttcaggccaccaatttcttcctcggacagccgctcagcaataacctagga |
39943337 |
T |
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