View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16960_low_12 (Length: 238)

Name: NF16960_low_12
Description: NF16960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16960_low_12
NF16960_low_12
[»] chr3 (14 HSPs)
chr3 (6-152)||(34897794-34897940)
chr3 (130-235)||(1995468-1995573)
chr3 (141-215)||(52859272-52859346)
chr3 (145-235)||(10474400-10474489)
chr3 (148-234)||(44637967-44638052)
chr3 (189-236)||(2230006-2230053)
chr3 (182-232)||(33632849-33632899)
chr3 (191-238)||(19830438-19830485)
chr3 (181-232)||(54911681-54911732)
chr3 (190-232)||(25285843-25285885)
chr3 (147-236)||(27033674-27033763)
chr3 (189-238)||(29586357-29586406)
chr3 (189-238)||(43719952-43720001)
chr3 (182-235)||(51982583-51982636)
[»] chr6 (11 HSPs)
chr6 (139-238)||(2800566-2800665)
chr6 (139-238)||(7215807-7215906)
chr6 (138-238)||(4804469-4804569)
chr6 (149-238)||(23936274-23936365)
chr6 (187-238)||(27826559-27826610)
chr6 (182-236)||(17828566-17828620)
chr6 (140-182)||(9952993-9953035)
chr6 (190-228)||(9954332-9954370)
chr6 (189-238)||(12412658-12412707)
chr6 (189-238)||(21159374-21159423)
chr6 (189-237)||(13089754-13089802)
[»] chr1 (10 HSPs)
chr1 (139-238)||(39426231-39426330)
chr1 (138-238)||(32887735-32887834)
chr1 (141-227)||(35534741-35534825)
chr1 (147-238)||(26372273-26372362)
chr1 (143-236)||(26860010-26860102)
chr1 (189-238)||(7840684-7840733)
chr1 (181-238)||(24977261-24977318)
chr1 (147-236)||(50294026-50294115)
chr1 (189-238)||(12151788-12151837)
chr1 (182-238)||(5047379-5047435)
[»] chr2 (18 HSPs)
chr2 (141-236)||(30709133-30709228)
chr2 (140-238)||(4446852-4446950)
chr2 (140-215)||(30217517-30217592)
chr2 (138-238)||(19908801-19908899)
chr2 (182-238)||(15709789-15709845)
chr2 (139-209)||(30721564-30721632)
chr2 (182-232)||(36929743-36929793)
chr2 (139-235)||(31618724-31618818)
chr2 (182-214)||(19905926-19905958)
chr2 (190-238)||(28564913-28564961)
chr2 (183-238)||(21454494-21454548)
chr2 (140-214)||(2063399-2063472)
chr2 (190-232)||(35315294-35315336)
chr2 (189-238)||(13238702-13238751)
chr2 (143-232)||(30857638-30857726)
chr2 (181-234)||(34512022-34512075)
chr2 (189-238)||(35316846-35316895)
chr2 (190-235)||(38397105-38397150)
[»] chr8 (9 HSPs)
chr8 (141-238)||(42761734-42761831)
chr8 (138-236)||(21360299-21360400)
chr8 (182-238)||(18689512-18689568)
chr8 (182-235)||(24557179-24557232)
chr8 (189-238)||(30426674-30426723)
chr8 (182-238)||(17520403-17520459)
chr8 (189-238)||(28069740-28069789)
chr8 (189-238)||(36991377-36991426)
chr8 (182-238)||(26749546-26749602)
[»] chr7 (14 HSPs)
chr7 (140-229)||(47270580-47270668)
chr7 (178-234)||(29844316-29844372)
chr7 (182-238)||(7712365-7712421)
chr7 (189-237)||(12139349-12139397)
chr7 (147-234)||(4888492-4888579)
chr7 (176-238)||(40023248-40023310)
chr7 (189-238)||(25084733-25084782)
chr7 (190-235)||(32915980-32916025)
chr7 (182-234)||(989154-989206)
chr7 (183-238)||(39855812-39855867)
chr7 (190-232)||(24193620-24193662)
chr7 (189-238)||(9559059-9559108)
chr7 (139-238)||(33450527-33450627)
chr7 (182-238)||(47799898-47799954)
[»] chr4 (21 HSPs)
chr4 (139-210)||(15178628-15178699)
chr4 (142-238)||(36532646-36532741)
chr4 (148-234)||(5815267-5815350)
chr4 (147-238)||(19901881-19901972)
chr4 (147-238)||(23610663-23610754)
chr4 (190-238)||(30567922-30567970)
chr4 (182-238)||(48914516-48914572)
chr4 (182-238)||(56453818-56453874)
chr4 (143-238)||(1871298-1871392)
chr4 (147-238)||(5416429-5416519)
chr4 (147-214)||(39862562-39862629)
chr4 (189-238)||(3952175-3952224)
chr4 (189-238)||(5763167-5763216)
chr4 (189-238)||(18207045-18207094)
chr4 (182-235)||(23474135-23474188)
chr4 (189-238)||(24073637-24073686)
chr4 (145-210)||(33841766-33841830)
chr4 (189-238)||(56558300-56558349)
chr4 (190-238)||(34778442-34778490)
chr4 (144-232)||(42844148-42844235)
chr4 (182-238)||(56269074-56269130)
[»] chr5 (13 HSPs)
chr5 (147-238)||(29341016-29341106)
chr5 (189-238)||(4895740-4895789)
chr5 (189-238)||(35660614-35660663)
chr5 (147-238)||(11775814-11775905)
chr5 (147-238)||(43309129-43309220)
chr5 (190-236)||(14688597-14688643)
chr5 (189-238)||(10362019-10362068)
chr5 (189-238)||(14349824-14349873)
chr5 (189-238)||(18625426-18625475)
chr5 (190-235)||(18653385-18653430)
chr5 (182-235)||(31653059-31653112)
chr5 (189-238)||(32129622-32129671)
chr5 (189-238)||(37266752-37266801)
[»] scaffold0062 (1 HSPs)
scaffold0062 (182-238)||(58701-58757)
[»] scaffold0250 (1 HSPs)
scaffold0250 (189-238)||(7168-7217)
[»] scaffold0121 (1 HSPs)
scaffold0121 (182-231)||(29567-29616)
[»] scaffold0035 (1 HSPs)
scaffold0035 (189-238)||(16402-16451)
[»] scaffold0012 (1 HSPs)
scaffold0012 (189-238)||(208084-208133)


Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 6 - 152
Target Start/End: Original strand, 34897794 - 34897940
Alignment:
Q  6 tggacatcatcaataccgttttgttcggtagaactataattttgatacaaatagaaaatatcattgtaaaaactgttttgtttttggagaatttgttgga 105  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34897794 tggacatcttcaataccgttttgttcggtagaactataattttgatacaaatagaaaatatcattgtaaaaactgttttgtttttggagaatttgtcgga 34897893  T
Q  106 atccaagtcaacatgtaatagaggtgggtgagaggggttaggatcct 152  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  34897894 atccaagtcaacatgtaattgaggtgggtgagaggggttaggatcct 34897940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 130 - 235
Target Start/End: Complemental strand, 1995573 - 1995468
Alignment:
Q  130 tgggtgagaggggttaggatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccat 229  Q
    ||||||| | ||||||||||||||||||||| || |||| ||||||||||||||||||  ||||||||||||| | ||||||||||||| |||||||||     
T  1995573 tgggtgacatgggttaggatcctcttcattttatcaaataaatggaagtacacaatttgaagagagatagacatagaaaatagataatgagtcctaccaa 1995474  T
Q  230 taagtg 235  Q
    ||||||    
T  1995473 taagtg 1995468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 52859346 - 52859272
Alignment:
Q  141 ggttaggatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagata 215  Q
    ||||| |||||||| ||||||||||||| |||| || |||||||||| |||||||||||||||||||||||||||    
T  52859346 ggttatgatcctctccatttgataaaataaatgaaaatacacaatttagagagagatagacacataaaatagata 52859272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 10474400 - 10474489
Alignment:
Q  145 aggatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagtg 235  Q
    ||||||||||  |||||| | ||| |||||| |||  ||||||||||||| |||||||||||||||||||||||| |||||| ||||||||    
T  10474400 aggatcctctctatttgacataataaatgga-gtatgcaattttgagagatatagacacataaaatagataatggatcctactattaagtg 10474489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 44638052 - 44637967
Alignment:
Q  148 atcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagt 234  Q
    |||||| |||||||| ||||| |||||| |||  ||||||||||||||||| |||||||||||||||| |||  ||||| |||||||    
T  44638052 atcctcatcatttgacaaaataaatgga-gtatgcaattttgagagagataaacacataaaatagatagtggaccctactattaagt 44637967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 2230053 - 2230006
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgg 236  Q
    |||||||||||||||| ||||||||| ||||||||||||| |||||||    
T  2230053 gagagagatagacacaaaaaatagatgatgggtcctaccactaagtgg 2230006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 33632899 - 33632849
Alignment:
Q  182 caattttgagagagatagacacataaaatagataatgggtcctaccattaa 232  Q
    |||||| ||||||||||||||||||||||||||| ||| |||||| |||||    
T  33632899 caatttggagagagatagacacataaaatagatagtggatcctactattaa 33632849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 19830438 - 19830485
Alignment:
Q  191 gagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||| ||||||||| |||||||||  ||||||||||||||||||||||    
T  19830438 gagaaatagacacaaaaaatagatggtgggtcctaccattaagtgggt 19830485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 54911732 - 54911681
Alignment:
Q  181 acaattttgagagagatagacacataaaatagataatgggtcctaccattaa 232  Q
    |||||||  ||||||||||| ||||||||||| || ||||||||||||||||    
T  54911732 acaatttgaagagagatagagacataaaataggtagtgggtcctaccattaa 54911681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 25285843 - 25285885
Alignment:
Q  190 agagagatagacacataaaatagataatgggtcctaccattaa 232  Q
    |||||||||||||||||||||||||| ||| ||||| ||||||    
T  25285843 agagagatagacacataaaatagatagtggatcctatcattaa 25285885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 236
Target Start/End: Complemental strand, 27033763 - 27033674
Alignment:
Q  147 gatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagtgg 236  Q
    |||| ||| ||||||||||||| ||||||  |   ||| || ||||||||||||||||  ||||||||  |||||||||||| |||||||    
T  27033763 gatcatctccatttgataaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgggtcctaccactaagtgg 27033674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 29586406 - 29586357
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    ||||||||||||||||||||||||||| |  ||| ||| |||||||||||    
T  29586406 gagagagatagacacataaaatagatagtaagtcttactattaagtgggt 29586357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 43719952 - 43720001
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||||||||||| |||||| ||  |||||||||||| |||||||||    
T  43719952 gagagagatagacacaaaaaataaattgtgggtcctaccactaagtgggt 43720001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 51982583 - 51982636
Alignment:
Q  182 caattttgagagagatagacacataaaatagataatgggtcctaccattaagtg 235  Q
    |||||| |||||||||||| ||||||||||| || ||||| ||| |||||||||    
T  51982583 caatttggagagagatagatacataaaatagttagtgggttctatcattaagtg 51982636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 2800566 - 2800665
Alignment:
Q  139 ggggttaggatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||||||||||| ||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||| ||| || |||||||||||||||    
T  2800566 ggggttaggatcctctccatttgataaaattaatggaaatacacaatttggagagagatagacacataaaatagatagtggatcataccattaagtgggt 2800665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 7215807 - 7215906
Alignment:
Q  139 ggggttaggatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||| ||||||| ||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||| ||| |||||    
T  7215807 ggggttagtatcctctccatttgataaaataaatggaagtgcacaatttggagagagatagacacataaaatagatagtgggtcctaccactaattgggt 7215906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 4804569 - 4804469
Alignment:
Q  138 aggggttaggatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagtggg 237  Q
    |||||| | |||||||| ||||||  ||||| ||||||  |  |||| || |||||||||||||||| |||||||||  |||||||||||| ||||||||    
T  4804569 aggggtgaagatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtggg 4804470  T
Q  238 t 238  Q
    |    
T  4804469 t 4804469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 23936365 - 23936274
Alignment:
Q  149 tcctcttcatttgataaaatgaatggaagtacacaatt--ttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||| ||||||||||| |||||| ||||||||||||    ||||||||||||||||||| || ||||  || | ||||||||||||||||    
T  23936365 tcctctccatttgataaattgaatgaaagtacacaattcggagagagagatagacacataagatggatagcggattctaccattaagtgggt 23936274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 27826610 - 27826559
Alignment:
Q  187 ttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||||||||||||| |||||||||  |||||||||||| |||||||||    
T  27826610 ttgagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggt 27826559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 17828566 - 17828620
Alignment:
Q  182 caattttgagagagatagacacataaaatagataatgggtcctaccattaagtgg 236  Q
    |||||| ||||||||||||||||||||||||||| ||| | |||| |||||||||    
T  17828566 caatttggagagagatagacacataaaatagatagtggattctactattaagtgg 17828620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 9952993 - 9953035
Alignment:
Q  140 gggttaggatcctcttcatttgataaaatgaatggaagtacac 182  Q
    |||||| |||||||| ||||||||||||| |||||||||||||    
T  9952993 gggttaagatcctctccatttgataaaataaatggaagtacac 9953035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 9954332 - 9954370
Alignment:
Q  190 agagagatagacacataaaatagataatgggtcctacca 228  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  9954332 agagagatagacacataaaatagatagtgggtcccacca 9954370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 12412707 - 12412658
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    ||||||||||||||||  ||||||||  |||||||||||| |||||||||    
T  12412707 gagagagatagacacaagaaatagatggtgggtcctaccactaagtgggt 12412658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 21159374 - 21159423
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||| ||||||||| |||||||||  |||||||||||| |||||||||    
T  21159374 gagagaaatagacacaaaaaatagatggtgggtcctaccactaagtgggt 21159423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 13089754 - 13089802
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtggg 237  Q
    |||||||||||||||| || ||||||  |||||||||||| ||||||||    
T  13089754 gagagagatagacacaaaatatagatggtgggtcctaccactaagtggg 13089802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 39426330 - 39426231
Alignment:
Q  139 ggggttaggatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||| ||| ||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||| |||||    
T  39426330 ggggttagtatcatctccatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagatagtgggtcctaccactaattgggt 39426231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 32887735 - 32887834
Alignment:
Q  138 aggggttaggatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagtggg 237  Q
    |||| |||||||||||||||||||||||||| |||||| ||||||| ||| |||| |||||||||||||||||| ||| ||| |||||||||||| ||||    
T  32887735 agggattaggatcctcttcatttgataaaataaatgga-gtacacagtttagagaaagatagacacataaaataaatagtggatcctaccattaaatggg 32887833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 35534741 - 35534825
Alignment:
Q  141 ggttaggatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctacc 227  Q
    |||||| ||||||| ||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||| ||| |||||||    
T  35534741 ggttagtatcctctccatttgataaaataaatggaagtacacaattt--agagagatagacacataaaatagatagtggatcctacc 35534825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 26372362 - 26372273
Alignment:
Q  147 gatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    ||||||||  |||||||||||| |||||||||| | |||||  |||||||||||||| ||||||||| ||| | ||||||||||||||||||    
T  26372362 gatcctctcaatttgataaaataaatggaagtagataattt--agagagatagacacgtaaaatagacaatagatcctaccattaagtgggt 26372273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 26860010 - 26860102
Alignment:
Q  143 ttaggatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagtgg 236  Q
    |||||||| |||  |||||||||||| |||||| ||||| |||||  |||||||||||||||||||||||||| | ||||||| || |||||||    
T  26860010 ttaggatcatctctatttgataaaataaatgga-gtacataatttgaagagagatagacacataaaatagatagtaggtcctatcactaagtgg 26860102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 7840684 - 7840733
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    ||||||||||||||||  |||||||| |||||||||||||||||| ||||    
T  7840684 gagagagatagacacaagaaatagatgatgggtcctaccattaagcgggt 7840733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 24977318 - 24977261
Alignment:
Q  181 acaattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    ||||||| |||||||||||||||| |||||||||  ||| |||||||| |||||||||    
T  24977318 acaatttagagagagatagacacaaaaaatagatggtggatcctaccactaagtgggt 24977261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 50294026 - 50294115
Alignment:
Q  147 gatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagtgg 236  Q
    |||||||||||||||  ||||| ||||||  |   ||| || |||||||||||||||| |||||||||  |||||||||||| |||||||    
T  50294026 gatcctcttcatttggcaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgg 50294115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 12151837 - 12151788
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||| ||||||| |||||||||  |||||||||||| |||||||||    
T  12151837 gagagagaaagacacaaaaaatagattgtgggtcctaccactaagtgggt 12151788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 5047379 - 5047435
Alignment:
Q  182 caattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||| ||||||||| ||  ||||||||||||||||| |||||||| || ||||||    
T  5047379 caatttggagagagattgatgcataaaatagataatggatcctaccactatgtgggt 5047435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 30709228 - 30709133
Alignment:
Q  141 ggttaggatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagtgg 236  Q
    |||||||||||||| ||| | ||||||| |||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||    
T  30709228 ggttaggatcctctccatcttataaaatcaatgaaagtacacaatttggagagagatagacacataaaatagatattgggtcctaccactaagtgg 30709133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 4446852 - 4446950
Alignment:
Q  140 gggttaggatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    ||||||| ||||||| ||||||||||||| |||||||||  |||||||  |||||||||||||||||||||||||| ||| |||||||| ||| |||||    
T  4446852 gggttagtatcctctccatttgataaaataaatggaagtgtacaatttgaagagagatagacacataaaatagatagtggatcctaccactaattgggt 4446950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 30217592 - 30217517
Alignment:
Q  140 gggttaggatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagata 215  Q
    |||||||||||||||  |||||||||||| |||||||| ||||||||| ||| |||||||||||||||||||||||    
T  30217592 gggttaggatcctctctatttgataaaataaatggaagcacacaatttagagtgagatagacacataaaatagata 30217517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 19908899 - 19908801
Alignment:
Q  138 aggggttaggatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagtggg 237  Q
    |||||| | |||||||||||||||||| ||| |||||| |||  |||||| ||| ||||||||||||||||||||||| || |||||||  |||||||||    
T  19908899 aggggtaaagatcctcttcatttgatataataaatgga-gtatgcaatttggag-gagatagacacataaaatagatagtgagtcctacttttaagtggg 19908802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 15709845 - 15709789
Alignment:
Q  182 caattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||| |||||||||| ||| |||||||||||| ||| ||||||||||||||||||    
T  15709845 caatttggagagagataaacatataaaatagatagtggatcctaccattaagtgggt 15709789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 30721564 - 30721632
Alignment:
Q  139 ggggttaggatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaa 209  Q
    ||||||| ||||| || ||||||||||||| ||| ||||||||||||||   |||||||||||||||||||    
T  30721564 ggggttaagatccgctccatttgataaaataaatagaagtacacaattt--ggagagatagacacataaaa 30721632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 36929793 - 36929743
Alignment:
Q  182 caattttgagagagatagacacataaaatagataatgggtcctaccattaa 232  Q
    |||||| |||||||||||||||||||||||| || || |||||||||||||    
T  36929793 caatttggagagagatagacacataaaataggtagtgtgtcctaccattaa 36929743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 31618724 - 31618818
Alignment:
Q  139 ggggttaggatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagtg 235  Q
    |||||||||||||||| |||||||||||  |||  | |||| ||||||| |||| ||||||| | |||||||||||| || ||| || |||||||||    
T  31618724 ggggttaggatcctctccatttgataaa--gaaatggagtatacaatttggagaaagatagatatataaaatagatagtgagtcatatcattaagtg 31618818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 214
Target Start/End: Complemental strand, 19905958 - 19905926
Alignment:
Q  182 caattttgagagagatagacacataaaatagat 214  Q
    |||||||||||||||||||||||||||||||||    
T  19905958 caattttgagagagatagacacataaaatagat 19905926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 28564961 - 28564913
Alignment:
Q  190 agagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    ||||||||||||||| |||||||||  |||||||||||| |||||||||    
T  28564961 agagagatagacacaaaaaatagatggtgggtcctaccactaagtgggt 28564913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 21454494 - 21454548
Alignment:
Q  183 aattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    ||||| |||||||||||||||| |||||||||  |||||| |||||||||||||||    
T  21454494 aatttagagagagatagacaca-aaaatagattgtgggtcataccattaagtgggt 21454548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 2063472 - 2063399
Alignment:
Q  140 gggttaggatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagat 214  Q
    |||||| |||||||||||||||| ||||| ||| || ||   |||||| |||||||||||||||| |||||||||    
T  2063472 gggttaagatcctcttcatttgacaaaataaataga-gtttgcaatttggagagagatagacacaaaaaatagat 2063399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 35315294 - 35315336
Alignment:
Q  190 agagagatagacacataaaatagataatgggtcctaccattaa 232  Q
    |||||||||||||||||||||||||||||| || ||| |||||    
T  35315294 agagagatagacacataaaatagataatggatcttactattaa 35315336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 13238751 - 13238702
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||||||||||| |||||||||  ||||||||||||  ||||||||    
T  13238751 gagagagatagacacaaaaaatagatggtgggtcctaccaccaagtgggt 13238702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 30857638 - 30857726
Alignment:
Q  143 ttaggatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaa 232  Q
    |||||||||||| ||||| | ||||| |||||| |||   |||||  |||||| |||||||| |||||||||||||| |||||| |||||    
T  30857638 ttaggatcctctccatttcacaaaataaatgga-gtatgtaatttgaagagaggtagacacaaaaaatagataatggatcctactattaa 30857726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 34512022 - 34512075
Alignment:
Q  181 acaattttgagagagatagacacataaaatagataatgggtcctaccattaagt 234  Q
    ||||||| |||| |||||||||||||||||||||| |||||  ||| |||||||    
T  34512022 acaatttggagaaagatagacacataaaatagatagtgggttatactattaagt 34512075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 35316895 - 35316846
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||||||||||| |||||||||  ||| |||||||| |||||||||    
T  35316895 gagagagatagacacaaaaaatagatggtggatcctaccactaagtgggt 35316846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 38397150 - 38397105
Alignment:
Q  190 agagagatagacacataaaatagataatgggtcctaccattaagtg 235  Q
    ||||||||||||| |||||||||||| ||||| |||| ||||||||    
T  38397150 agagagatagacaaataaaatagatagtgggtgctactattaagtg 38397105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 238
Target Start/End: Complemental strand, 42761831 - 42761734
Alignment:
Q  141 ggttaggatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    ||||||||||||||||| || ||||||| ||||||||||| ||||||  |||||||||||||||||||||||||| ||| |||||||| | |||||||    
T  42761831 ggttaggatcctcttcacttaataaaataaatggaagtacgcaatttgaagagagatagacacataaaatagatagtggatcctaccactcagtgggt 42761734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 21360400 - 21360299
Alignment:
Q  138 aggggttaggatcctcttcatttgataaaatgaatggaag----tacacaattttgagagagatagacacataaaatagataatgggtcctaccattaag 233  Q
    ||||||||||||||||| ||||||||||||| ||| ||||    |||| ||||| |||||||||| |||||||| ||||||||| | || ||||||||||    
T  21360400 aggggttaggatcctctccatttgataaaataaat-gaagtacatacataatttggagagagataaacacataatatagataatagatcataccattaag 21360302  T
Q  234 tgg 236  Q
    |||    
T  21360301 tgg 21360299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 18689568 - 18689512
Alignment:
Q  182 caattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||| |||||||||| ||| |||||||||||| ||| ||||||||||||||||||    
T  18689568 caatttggagagagataaacatataaaatagatagtggatcctaccattaagtgggt 18689512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 24557179 - 24557232
Alignment:
Q  182 caattttgagagagatagacacataaaatagataatgggtcctaccattaagtg 235  Q
    |||||| || ||||||| | ||||||||||| ||||||||||||||||||||||    
T  24557179 caatttggaaagagatatagacataaaataggtaatgggtcctaccattaagtg 24557232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 30426674 - 30426723
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||||||||||| |||||||||  |||||||||||| |||||||||    
T  30426674 gagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggt 30426723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 17520459 - 17520403
Alignment:
Q  182 caattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||| |||||| ||||||||||||||||||||  | ||||||| |||||||||||    
T  17520459 caatttggagagatatagacacataaaatagatagcgagtcctactattaagtgggt 17520403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 28069789 - 28069740
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||| ||||||| |||||||||  |||||||||||| |||||||||    
T  28069789 gagagagaaagacacaaaaaatagatggtgggtcctaccactaagtgggt 28069740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 36991426 - 36991377
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||||||||| |  |||||||| ||||||||||||| |||||||||    
T  36991426 gagagagatagacataagaaatagatgatgggtcctaccactaagtgggt 36991377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 26749546 - 26749602
Alignment:
Q  182 caattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||| |||||||||||||||| ||||||  | |||||||||| || |||||||||    
T  26749546 caatttggagagagatagacacaaaaaataagtgatgggtcctatcactaagtgggt 26749602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 140 - 229
Target Start/End: Complemental strand, 47270668 - 47270580
Alignment:
Q  140 gggttaggatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccat 229  Q
    |||||||||||||||  |||||||||||| ||||||| |||||||||| |||| |||||||||||| ||||||||||| || ||||||||    
T  47270668 gggttaggatcctctctatttgataaaataaatggaattacacaatttagagatagatagacacat-aaatagataataggccctaccat 47270580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 29844372 - 29844316
Alignment:
Q  178 tacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagt 234  Q
    |||||||||| ||||||||||||||||||||||||||| ||||| |||||| |||||    
T  29844372 tacacaatttggagagagatagacacataaaatagatagtgggttctaccactaagt 29844316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 7712365 - 7712421
Alignment:
Q  182 caattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||| |||||||||||| |||||| ||||||| || |||||||||||||||||||    
T  7712365 caatttagagagagatagagacataagatagatagtgagtcctaccattaagtgggt 7712421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 12139397 - 12139349
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtggg 237  Q
    |||||||||||||||| |||||||||  |||||||||||||||||||||    
T  12139397 gagagagatagacacaaaaaatagatggtgggtcctaccattaagtggg 12139349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 234
Target Start/End: Complemental strand, 4888579 - 4888492
Alignment:
Q  147 gatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagt 234  Q
    |||||||| ||||||| ||||| ||||||  |   ||| || |||||||||||||||| |||||||||| |||||||||||| |||||    
T  4888579 gatcctctccatttgacaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagatagtgggtcctaccactaagt 4888492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 40023248 - 40023310
Alignment:
Q  176 agtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||| ||||||| |||| ||||||||| ||||||||| |||||| || |||||||||||||||    
T  40023248 agtatacaatttggagaaagatagacatataaaatagttaatggatcttaccattaagtgggt 40023310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 25084733 - 25084782
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||||||||||| |||||||||  |||||||||||| |||||||||    
T  25084733 gagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggt 25084782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 32916025 - 32915980
Alignment:
Q  190 agagagatagacacataaaatagataatgggtcctaccattaagtg 235  Q
    ||||||||||||||| |||||| ||| |||||||||||||||||||    
T  32916025 agagagatagacacaaaaaataaatagtgggtcctaccattaagtg 32915980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 989206 - 989154
Alignment:
Q  182 caattttgagagagatagacacataaaatagataatgggtcctaccattaagt 234  Q
    |||||| |||||||||||||||| |||||| ||| |||||||||||| |||||    
T  989206 caatttggagagagatagacacaaaaaatatatagtgggtcctaccactaagt 989154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 39855812 - 39855867
Alignment:
Q  183 aattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    ||||| ||||||||||||||||||||| ||||  | |||||||||| |||||||||    
T  39855812 aatttggagagagatagacacataaaaaagatggtcggtcctaccactaagtgggt 39855867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 24193662 - 24193620
Alignment:
Q  190 agagagatagacacataaaatagataatgggtcctaccattaa 232  Q
    |||||||||||||||||||||||| |||| ||| |||||||||    
T  24193662 agagagatagacacataaaatagacaatgagtcttaccattaa 24193620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 9559059 - 9559108
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||||||| ||| |||||||||  |||||||||||| |||||||||    
T  9559059 gagagagatagatacaaaaaatagatggtgggtcctaccactaagtgggt 9559108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 33450627 - 33450527
Alignment:
Q  139 ggggttaggatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataa-aatagataatgggtcctaccattaagtggg 237  Q
    ||||||| |||||||| |||||| |||||| ||| ||  |   |||||| |||||||||||||||| || |||||||  ||||||| |||| ||||||||    
T  33450627 ggggttaagatcctctccatttgctaaaataaattgagttttgcaatttggagagagatagacacaaaagaatagatggtgggtccaaccactaagtggg 33450528  T
Q  238 t 238  Q
    |    
T  33450527 t 33450527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 47799898 - 47799954
Alignment:
Q  182 caattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||| |||||||||||||||| ||||||  | |||||||||| || |||||||||    
T  47799898 caatttggagagagatagacacaaaaaataagtgatgggtcctatcactaagtgggt 47799954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 15178628 - 15178699
Alignment:
Q  139 ggggttaggatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaat 210  Q
    ||||||||||| |||| |||||||||||||||||||||||||| |||||  ||||||||| |||||||||||    
T  15178628 ggggttaggattctctccatttgataaaatgaatggaagtacataatttgaagagagataaacacataaaat 15178699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 238
Target Start/End: Complemental strand, 36532741 - 36532646
Alignment:
Q  142 gttaggatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||| |||||||| ||| ||||||||| |||||| || |||||||| ||||||||||||||||||||||| ||| ||| ||||| |||| |||||||    
T  36532741 gttaagatcctctccatctgataaaataaatgga-gttcacaatttagagagagatagacacataaaataaatagtggatcctatcattcagtgggt 36532646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 148 - 234
Target Start/End: Original strand, 5815267 - 5815350
Alignment:
Q  148 atcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagt 234  Q
    ||||||| ||||||||||||| |||||| ||||| |||||||||||||||||||||  |||||| |||||||||| ||||| |||||    
T  5815267 atcctctccatttgataaaataaatgga-gtacaaaattttgagagagatagacac--aaaatatataatgggtcataccactaagt 5815350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 19901881 - 19901972
Alignment:
Q  147 gatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||| |||||| |||||| ||||||  |   ||| || |||||||||||||||| |||||||||  |||||||||||| |||||||||    
T  19901881 gatcctctccatttggtaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggt 19901972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 23610754 - 23610663
Alignment:
Q  147 gatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||| ||||||||||||| ||||||  |   ||| || |||||||||||||||| |||||||||  |||||| ||||| |||||||||    
T  23610754 gatcctctccatttgataaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcataccactaagtgggt 23610663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 30567970 - 30567922
Alignment:
Q  190 agagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    ||||||||||||||| |||||||||  |||||||||||| |||||||||    
T  30567970 agagagatagacacaaaaaatagatggtgggtcctaccactaagtgggt 30567922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 48914516 - 48914572
Alignment:
Q  182 caattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||| ||||||||| ||||||||||||||||  ||||||||| ||| ||||||||    
T  48914516 caatttagagagagatcgacacataaaatagattgtgggtcctatcataaagtgggt 48914572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 56453818 - 56453874
Alignment:
Q  182 caattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||| |||||||||||||||| ||||||| |  ||||||||| ||||||||||||    
T  56453818 caatttggagagagatagacacaaaaaataggtggtgggtcctatcattaagtgggt 56453874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 1871392 - 1871298
Alignment:
Q  143 ttaggatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    ||||||||||||  |||||| ||||| |||||| |||  |||||| |||||||||||||| | || ||||||| ||| |||||| | |||||||||    
T  1871392 ttaggatcctctcaatttgacaaaataaatgga-gtatgcaatttggagagagatagacaaaaaatatagatagtggatcctactactaagtgggt 1871298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 5416429 - 5416519
Alignment:
Q  147 gatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||| ||||||| ||||| ||||||  |   ||| || |||||||||||||||| |||||||||  |||||||||||| |||||||||    
T  5416429 gatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacaca-aaaatagattgtgggtcctaccactaagtgggt 5416519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 39862629 - 39862562
Alignment:
Q  147 gatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagat 214  Q
    |||||||| ||||||||||||| ||| ||| |   ||| ||||||||||||||||||| |||||||||    
T  39862629 gatcctctccatttgataaaataaatagaattttgcaagtttgagagagatagacacaaaaaatagat 39862562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 3952175 - 3952224
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||||||||| | |||||||||  |||||||||||| |||||||||    
T  3952175 gagagagatagacaaaaaaaatagatggtgggtcctaccactaagtgggt 3952224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 5763167 - 5763216
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||||||| ||| |||||||||  |||||||||||| |||||||||    
T  5763167 gagagagatagaaacaaaaaatagatggtgggtcctaccactaagtgggt 5763216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 18207045 - 18207094
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||||||||| | |||||||||  |||||||||||| |||||||||    
T  18207045 gagagagatagacaaaaaaaatagatggtgggtcctaccactaagtgggt 18207094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 23474188 - 23474135
Alignment:
Q  182 caattttgagagagatagacacataaaatagataatgggtcctaccattaagtg 235  Q
    |||||| | ||||||||||||||||||||||||  |||||||||| ||| ||||    
T  23474188 caatttggggagagatagacacataaaatagatggtgggtcctactattgagtg 23474135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 24073686 - 24073637
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    ||||||||||||||||  ||||||||  |||||||||||| |||||||||    
T  24073686 gagagagatagacacaacaaatagatggtgggtcctaccactaagtgggt 24073637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 33841766 - 33841830
Alignment:
Q  145 aggatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaat 210  Q
    |||||||||| |||||| |||| | |||||| ||| ||||||| |||||||||||||||| |||||    
T  33841766 aggatcctctccatttgttaaagtaaatgga-gtatacaatttggagagagatagacacaaaaaat 33841830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 56558349 - 56558300
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||||||||||| |||||||||  ||||||||| || |||||||||    
T  56558349 gagagagatagacacaaaaaatagatggtgggtcctatcactaagtgggt 56558300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 34778490 - 34778442
Alignment:
Q  190 agagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    ||||||||||||||| |||||||||  ||| |||||||| |||||||||    
T  34778490 agagagatagacacaaaaaatagatggtggatcctaccactaagtgggt 34778442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 42844148 - 42844235
Alignment:
Q  144 taggatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaa 232  Q
    ||||||||||| ||| | ||||||| ||| ||  || ||||||| |||| |||||||||||||||||||| | || ||||||| |||||    
T  42844148 taggatcctctccatattataaaataaatagagtta-acaatttggagatagatagacacataaaatagagagtgtgtcctactattaa 42844235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 56269074 - 56269130
Alignment:
Q  182 caattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||| |||||||||||||||| ||||||  |  |||||||||||| |||||||||    
T  56269074 caatttggagagagatagacacaaaaaataagtggtgggtcctaccactaagtgggt 56269130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 29341106 - 29341016
Alignment:
Q  147 gatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||| |||||| || ||| |||||| |||  |||||| |||||||||||||||| |||||||||| |||||||||| |||||||||||    
T  29341106 gatcctctccatttggtataataaatgga-gtatgcaatttggagagagatagacacagaaaatagatagtgggtcctactattaagtgggt 29341016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 4895740 - 4895789
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||||||||||| |||||||||  |||||||||||| |||||||||    
T  4895740 gagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggt 4895789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 35660614 - 35660663
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||||||||||| |||||||||  |||||||||||| |||||||||    
T  35660614 gagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggt 35660663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 11775905 - 11775814
Alignment:
Q  147 gatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||| |||||| |||||| ||||||  |   ||| || |||||||||||||||| |||||||||  ||| |||||||| |||||||||    
T  11775905 gatcctctccatttggtaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtggatcctaccactaagtgggt 11775814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 43309220 - 43309129
Alignment:
Q  147 gatcctcttcatttgataaaatgaatggaagtacacaattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    ||||||||| |||||||||||| ||||||  |   ||| || |||||||||||||| | |||||||||| ||| || ||||||||| |||||    
T  43309220 gatcctctttatttgataaaataaatggagttttgcaagttggagagagatagacataaaaaatagatagtggatcttaccattaaatgggt 43309129  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 14688643 - 14688597
Alignment:
Q  190 agagagatagacacataaaatagataatgggtcctaccattaagtgg 236  Q
    |||||||| ||||||||||||||||| ||| | ||||||||||||||    
T  14688643 agagagatcgacacataaaatagatattggattctaccattaagtgg 14688597  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 10362019 - 10362068
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||||||| ||||||||| | || ||| ||||||||||||||||||    
T  10362019 gagagagatagagacataaaattggtagtggatcctaccattaagtgggt 10362068  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 14349873 - 14349824
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||| ||||||| |||||||||  |||||||||||| |||||||||    
T  14349873 gagagagacagacacaaaaaatagatggtgggtcctaccactaagtgggt 14349824  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 18625426 - 18625475
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||| ||||||| |||||||||  |||||||||||| |||||||||    
T  18625426 gagagagaaagacacaaaaaatagatggtgggtcctaccactaagtgggt 18625475  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 18653430 - 18653385
Alignment:
Q  190 agagagatagacacataaaatagataatgggtcctaccattaagtg 235  Q
    ||||||||||||||| |||||||||| || || |||||||||||||    
T  18653430 agagagatagacacaaaaaatagatagtgagttctaccattaagtg 18653385  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 31653112 - 31653059
Alignment:
Q  182 caattttgagagagatagacacataaaatagataatgggtcctaccattaagtg 235  Q
    |||||| |||||||||| ||||||||||||||||  | ||||||| ||||||||    
T  31653112 caatttggagagagataaacacataaaatagatagcgagtcctactattaagtg 31653059  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 32129622 - 32129671
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||||||||||  |||||||||  |||||||||||| |||||||||    
T  32129622 gagagagatagacaccaaaaatagatggtgggtcctaccactaagtgggt 32129671  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 37266801 - 37266752
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||||||||||| |||||||||  |||||| ||||| |||||||||    
T  37266801 gagagagatagacacaaaaaatagatggtgggtcataccactaagtgggt 37266752  T

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Target: scaffold0062 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 58757 - 58701
Alignment:
Q  182 caattttgagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||| |||||||||| ||| |||||||||||| ||| ||||||||||||||||||    
T  58757 caatttggagagagataaacatataaaatagatagtggatcctaccattaagtgggt 58701  T

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Target: scaffold0250 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 7217 - 7168
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||||||||||| |||||||||  |||||||||| |||||||||||    
T  7217 gagagagatagacacaaaaaatagatggtgggtcctactattaagtgggt 7168  T

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Target: scaffold0121 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 29567 - 29616
Alignment:
Q  182 caattttgagagagatagacacataaaatagataatgggtcctaccatta 231  Q
    |||||| |||||||||||| ||||||||||| |||| ||||||| |||||    
T  29567 caatttagagagagatagagacataaaataggtaataggtcctagcatta 29616  T

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Target: scaffold0035 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 16402 - 16451
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||||||||||| |||||| ||  |||||||||||| |||||||||    
T  16402 gagagagatagacacaaaaaataaatggtgggtcctaccactaagtgggt 16451  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 208133 - 208084
Alignment:
Q  189 gagagagatagacacataaaatagataatgggtcctaccattaagtgggt 238  Q
    |||||||||| ||||| |||||||||  |||||||||||| |||||||||    
T  208133 gagagagataaacacaaaaaatagatggtgggtcctaccactaagtgggt 208084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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