View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16960_low_13 (Length: 236)
Name: NF16960_low_13
Description: NF16960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16960_low_13 |
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| [»] scaffold0186 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 112437 - 112217
Alignment:
| Q |
1 |
atataacgaccattcaaatattatcaatagtttcatcattctcatattcttttagtaataataaattaaatagtgtttcaatttttccatgaatatgata |
100 |
Q |
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| T |
112437 |
atataacgaccattcaaatattatcaatagtttcatcattctcatattcttttagtaataataaattaaatagtgtttcaatttttccatgaatatgata |
112338 |
T |
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| Q |
101 |
tcatgtgatcatgttctaaagttcaacgaatctaaaaactggttctatgttttaagactagctaccatcattatcatgattatagggagaaaattatgat |
200 |
Q |
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| T |
112337 |
tcatgtgatcatgttctaaagttcaacgaatctaaaaactggttctatgttttaagactagctaccatcattatcatgattatagggagaaaattatgat |
112238 |
T |
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| Q |
201 |
taagattttttggtacgaaag |
221 |
Q |
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| T |
112237 |
tatgattttttggtacgaaag |
112217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 134716 - 134667
Alignment:
| Q |
162 |
ctaccatcattatcatgattatagggagaaaattatgattaagatttttt |
211 |
Q |
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| T |
134716 |
ctactatcattatcatgattatagggagaaaataatgattaagttttttt |
134667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 6348 - 6226
Alignment:
| Q |
11 |
cattcaaatattatcaatagtttcatcattctcatattcttttagtaataataaattaaatagtgtttcaatt-tttccatgaa-tatgatatcatgtga |
108 |
Q |
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| T |
6348 |
cattcaagtattatgaatagtttgatcatccacatatacctttagtaacaa---atcaaatagtgtgtcaattgtttccatgaaatatgatatcattaga |
6252 |
T |
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| Q |
109 |
tcatgttctaaagttcaacgaatcta |
134 |
Q |
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| T |
6251 |
tcattttctaaagttcaacaaatcta |
6226 |
T |
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