View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16960_low_4 (Length: 405)
Name: NF16960_low_4
Description: NF16960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16960_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 9 - 387
Target Start/End: Original strand, 9038407 - 9038786
Alignment:
| Q |
9 |
gaagaatataaccaagaaatgcgaaagattgtagctgggttagcaagagaaatgtcaaaaaacttagggtttgatgaagactacatagaaaaagcattca |
108 |
Q |
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| T |
9038407 |
gaagaatataaccaagaaatgcgaaagattgtagctgggttagcaagagaaatttcaaaaaacttagggtttgatgaagactacatagaaaaagcattca |
9038506 |
T |
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| Q |
109 |
acatgaagtcagggtttgatgtgatggccatgaatctttatccaccaaattctaaatccaagggtaatattggtctccctgaccacactgatcctggatt |
208 |
Q |
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| T |
9038507 |
acatgaagtcagggtttgatgtgatggccatgaatctttatccaccaaattctaaatccaagggtaatattggtctccctaaccacactgatcctggatt |
9038606 |
T |
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| Q |
209 |
tgtggtaaccctaatgcaagatgtaaatgggggtctccaaatcctatcacataaaggaaagtggattaatgttaatattcctcatcatgctatactcatt |
308 |
Q |
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| T |
9038607 |
tgtggtaaccctaatgcaagatgtaaatgggggtctccaaatcctatcacataaaggaaagtggattaatgttaatattcctcatcatgctatactcatt |
9038706 |
T |
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| Q |
309 |
cagcttggtgatcatcttgaggtacttttattgaaatta-tttcattttcctagctatgttggaaacttcggaaactaat |
387 |
Q |
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| T |
9038707 |
tagcttggtgatcatcttgaggtacttttattgaaattagtttcattttcctagctatgttggaaactttggaaactaat |
9038786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 9 - 347
Target Start/End: Original strand, 9030251 - 9030589
Alignment:
| Q |
9 |
gaagaatataaccaagaaatgcgaaagattgtagctgggttagcaagagaaatgtcaaaaaacttagggtttgatgaagactacatagaaaaagcattca |
108 |
Q |
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| T |
9030251 |
gaagattataacaaagaaatgagaaagattgtagttggattagcaagatcaatgtcagaaaacttagggtttgatgaaaactacatagaggaagcattca |
9030350 |
T |
|
| Q |
109 |
acatgaagtcagggtttgatgtgatggccatgaatctttatccaccaaattctaaatccaagggtaatattggtctccctgaccacactgatcctggatt |
208 |
Q |
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| T |
9030351 |
acatgaagtcagggtttgatgtaatggccatgaatctttatccaccaaattctaaatccaagggtgatattggtctccctaaccacactgatcctggctt |
9030450 |
T |
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| Q |
209 |
tgtggtaaccctaatgcaagatgtaaatgggggtctccaaatcctatcacataaaggaaagtggattaatgttaatattcctcatcatgctatactcatt |
308 |
Q |
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| T |
9030451 |
tgtggtaaccctagtgcaagatgtaaatgggggtcttcaaatcctatcccacaaaggaacgtggattaatgtttatattccccatcatgctatactcatc |
9030550 |
T |
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| Q |
309 |
cagcttggtgatcatcttgaggtacttttattgaaatta |
347 |
Q |
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| T |
9030551 |
cagcttggtgaccatcttgaggtatttttcttgaaatta |
9030589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 337
Target Start/End: Original strand, 9047661 - 9047983
Alignment:
| Q |
9 |
gaagaatataaccaagaaatgcgaaagattgtagctgggttagcaagagaaatgtcaaaaaacttagggtttgatgaagactacatagaaaaagcattca |
108 |
Q |
| |
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||||||||| || || ||||| ||||| ||||||||| | ||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9047661 |
gaagaatattacaaacaaatgagaaaggttgtagctgagctagcaagagcagtgtcaaaaaacttagggtttgatgaaaactacatagaaaaagcattca |
9047760 |
T |
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| Q |
109 |
acatgaagtcagggtttgatgtgatggccatgaatctttatccaccaaattctaaatccaagggtaatattggtctccctgaccacactgatcctggatt |
208 |
Q |
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| T |
9047761 |
acatgaagtcaggttttgatgtgatggccatgaatctttatccacccaattctaaatccaagagtgatattggtatccctagccacactgatc-----tt |
9047855 |
T |
|
| Q |
209 |
tgtggtaaccctaatgcaagatgtaaatgggggtctccaaatcctatcacataaaggaaagtggattaatgttaatattcctcatcatgctatactcatt |
308 |
Q |
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| T |
9047856 |
tgtggtaaccctaatgcaagatgtaaat-ggggtctccaaatcctatcacataaaggaaattggattaatgttcatattcctcatcatgctatactaatc |
9047954 |
T |
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| Q |
309 |
cagcttggtgatcatcttgaggtactttt |
337 |
Q |
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| T |
9047955 |
cagcttggtgatcatcttgtggtactttt |
9047983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 229 - 350
Target Start/End: Original strand, 9040621 - 9040743
Alignment:
| Q |
229 |
atgtaaatgggggtctccaaatcctatcacataaaggaaagtggattaatgttaatattcctcatcatgctatactcattcagcttggtgatcatcttga |
328 |
Q |
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| T |
9040621 |
atgtaaatgggggtctcaaaatcctatcacataaaggaaattggattaatgttcatattccccatcatgctatactcatccagcttggtgatcatcttgt |
9040720 |
T |
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| Q |
329 |
ggtactt-ttattgaaattattt |
350 |
Q |
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|| |||| ||||| ||||||||| |
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| T |
9040721 |
ggcacttcttattaaaattattt |
9040743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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