View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16960_low_5 (Length: 393)

Name: NF16960_low_5
Description: NF16960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16960_low_5
NF16960_low_5
[»] chr1 (4 HSPs)
chr1 (123-376)||(32146983-32147236)
chr1 (14-122)||(32146842-32146950)
chr1 (313-349)||(421560-421596)
chr1 (313-349)||(28012234-28012270)
[»] chr7 (3 HSPs)
chr7 (14-73)||(19786477-19786536)
chr7 (320-349)||(19786451-19786480)
chr7 (313-349)||(8758457-8758493)
[»] chr4 (4 HSPs)
chr4 (313-361)||(17512991-17513039)
chr4 (318-361)||(33036052-33036095)
chr4 (318-350)||(28293095-28293127)
chr4 (313-345)||(22756777-22756809)
[»] chr5 (6 HSPs)
chr5 (313-361)||(21266174-21266222)
chr5 (313-361)||(33848532-33848580)
chr5 (313-361)||(10053378-10053426)
chr5 (313-349)||(13380666-13380702)
chr5 (313-349)||(25653751-25653787)
chr5 (318-349)||(12081117-12081148)
[»] chr2 (2 HSPs)
chr2 (326-360)||(30845003-30845037)
chr2 (313-349)||(45414253-45414289)
[»] scaffold0312 (1 HSPs)
scaffold0312 (313-349)||(8976-9012)
[»] chr3 (6 HSPs)
chr3 (313-349)||(42204511-42204547)
chr3 (313-349)||(42665353-42665389)
chr3 (313-361)||(43485466-43485514)
chr3 (19-98)||(34448031-34448110)
chr3 (320-349)||(29896031-29896060)
chr3 (313-349)||(54606873-54606909)
[»] scaffold0262 (1 HSPs)
scaffold0262 (313-349)||(12011-12047)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 123 - 376
Target Start/End: Original strand, 32146983 - 32147236
Alignment:
Q  123 aagatattactcttgcattatgnnnnnnnngttattgtcattatgtacannnnnnnataagagttcatgtacattttgttaatacatatgtgttggattc 222  Q
    ||||||||||||||||||||||        |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| ||||||    
T  32146983 aagatattactcttgcattatgttttttttgttattgtcattatgtacatttttttataagagttcatgtacattttgttaatacatatgtgtcggattc 32147082  T
Q  223 ttcatgtgtttgacattgaagtttattttttactaatatagaaaagttgggtttttggaaaagttatttatttagcgaaaagttatgtctataatataat 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32147083 ttcatgtgtttgacattgaagtttattttttactaatatagaaaagttggttttttggaaaagttatttatttagccaaaagttatgtctataatataat 32147182  T
Q  323 aataaaaatgtttaattttgatttaattagagactcaatatggctgcaccataa 376  Q
    ||||||||||||||||||||||||||| ||||||||| |||| |||||||||||    
T  32147183 aataaaaatgtttaattttgatttaatcagagactcagtatgactgcaccataa 32147236  T

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Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 32146842 - 32146950
Alignment:
Q  14 cacagattcttatggatgtgagcaagatagatttgataacaactatattaggcttaaatatatcaatgcctatcataattgctcctacgatcttgcaaaa 113  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  32146842 cacagattcttatggatgtgagcaagatagatttgacaacaactatattaggcttaaatatttcaatgcctatcataattgctcctacaatcttgcaaaa 32146941  T
Q  114 gatggctca 122  Q
    |||||||||    
T  32146942 gatggctca 32146950  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 421596 - 421560
Alignment:
Q  313 ataatataataataaaaatgtttaattttgatttaat 349  Q
    |||| ||||||||||||||||||||||||||||||||    
T  421596 ataaaataataataaaaatgtttaattttgatttaat 421560  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 28012270 - 28012234
Alignment:
Q  313 ataatataataataaaaatgtttaattttgatttaat 349  Q
    |||| ||||||||||||||||||||||||||||||||    
T  28012270 ataaaataataataaaaatgtttaattttgatttaat 28012234  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 19786536 - 19786477
Alignment:
Q  14 cacagattcttatggatgtgagcaagatagatttgataacaactatattaggcttaaata 73  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19786536 cacatattcttatggatgtgagcaagatagatttgacaacaactatattaggcttaaata 19786477  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 349
Target Start/End: Complemental strand, 19786480 - 19786451
Alignment:
Q  320 aataataaaaatgtttaattttgatttaat 349  Q
    ||||||||||||||||||||||||||||||    
T  19786480 aataataaaaatgtttaattttgatttaat 19786451  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 8758493 - 8758457
Alignment:
Q  313 ataatataataataaaaatgtttaattttgatttaat 349  Q
    |||| |||||||||||||||||||||||| |||||||    
T  8758493 ataaaataataataaaaatgtttaattttaatttaat 8758457  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 17512991 - 17513039
Alignment:
Q  313 ataatataataataaaaatgtttaattttgatttaattagagactcaat 361  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||    
T  17512991 ataaaataataataaaaatgtttaattttgatttaattatagactcaat 17513039  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 361
Target Start/End: Original strand, 33036052 - 33036095
Alignment:
Q  318 ataataataaaaatgtttaattttgatttaattagagactcaat 361  Q
    |||||||||| ||||||||||||||||||||| |||||||||||    
T  33036052 ataataataataatgtttaattttgatttaatcagagactcaat 33036095  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 350
Target Start/End: Original strand, 28293095 - 28293127
Alignment:
Q  318 ataataataaaaatgtttaattttgatttaatt 350  Q
    |||||||||||||||||||||||||||||||||    
T  28293095 ataataataaaaatgtttaattttgatttaatt 28293127  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 345
Target Start/End: Original strand, 22756777 - 22756809
Alignment:
Q  313 ataatataataataaaaatgtttaattttgatt 345  Q
    |||| ||||||||||||||||||||||||||||    
T  22756777 ataaaataataataaaaatgtttaattttgatt 22756809  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 21266222 - 21266174
Alignment:
Q  313 ataatataataataaaaatgtttaattttgatttaattagagactcaat 361  Q
    |||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  21266222 ataaaataataataaaaatgtttaaatttgatttaatcagagactcaat 21266174  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 33848532 - 33848580
Alignment:
Q  313 ataatataataataaaaatgtttaattttgatttaattagagactcaat 361  Q
    |||| |||||||||||||||||||||||||||||||| |||||| ||||    
T  33848532 ataaaataataataaaaatgtttaattttgatttaatcagagacacaat 33848580  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 10053426 - 10053378
Alignment:
Q  313 ataatataataataaaaatgtttaattttgatttaattagagactcaat 361  Q
    |||| |||||||||||||| ||||||||||||||||| || ||||||||    
T  10053426 ataaaataataataaaaatatttaattttgatttaatcagggactcaat 10053378  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 13380702 - 13380666
Alignment:
Q  313 ataatataataataaaaatgtttaattttgatttaat 349  Q
    |||| ||||||||||||||||||||||||||||||||    
T  13380702 ataaaataataataaaaatgtttaattttgatttaat 13380666  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 25653787 - 25653751
Alignment:
Q  313 ataatataataataaaaatgtttaattttgatttaat 349  Q
    |||| ||||||||||||||||||||||||||||||||    
T  25653787 ataaaataataataaaaatgtttaattttgatttaat 25653751  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 349
Target Start/End: Original strand, 12081117 - 12081148
Alignment:
Q  318 ataataataaaaatgtttaattttgatttaat 349  Q
    ||||||||||||||||||||||||||||||||    
T  12081117 ataataataaaaatgtttaattttgatttaat 12081148  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 326 - 360
Target Start/End: Complemental strand, 30845037 - 30845003
Alignment:
Q  326 aaaaatgtttaattttgatttaattagagactcaa 360  Q
    |||||||||||||||||||||||||||||||||||    
T  30845037 aaaaatgtttaattttgatttaattagagactcaa 30845003  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 45414253 - 45414289
Alignment:
Q  313 ataatataataataaaaatgtttaattttgatttaat 349  Q
    |||| ||||||||||||||||||||||||||||||||    
T  45414253 ataaaataataataaaaatgtttaattttgatttaat 45414289  T

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Target: scaffold0312 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 8976 - 9012
Alignment:
Q  313 ataatataataataaaaatgtttaattttgatttaat 349  Q
    |||| ||||||||||||||||||||||||||||||||    
T  8976 ataaaataataataaaaatgtttaattttgatttaat 9012  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 42204547 - 42204511
Alignment:
Q  313 ataatataataataaaaatgtttaattttgatttaat 349  Q
    |||| ||||||||||||||||||||||||||||||||    
T  42204547 ataaaataataataaaaatgtttaattttgatttaat 42204511  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 42665353 - 42665389
Alignment:
Q  313 ataatataataataaaaatgtttaattttgatttaat 349  Q
    |||| ||||||||||||||||||||||||||||||||    
T  42665353 ataaaataataataaaaatgtttaattttgatttaat 42665389  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 43485514 - 43485466
Alignment:
Q  313 ataatataataataaaaatgtttaattttgatttaattagagactcaat 361  Q
    |||| |||||||||||||||||||||||| ||||||| || ||||||||    
T  43485514 ataaaataataataaaaatgtttaattttaatttaatcagggactcaat 43485466  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 34448031 - 34448110
Alignment:
Q  19 attcttatggatgtgagcaagatagatttgataacaactatattaggcttaaatatatcaatgcctatcataattgctcc 98  Q
    ||||||||||| || ||||||||||||||||  |||||| || |||||| ||| |||| | | |||||||| ||||||||    
T  34448031 attcttatggacgtaagcaagatagatttgacgacaactgtactaggctaaaaaatatgacttcctatcatgattgctcc 34448110  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 349
Target Start/End: Complemental strand, 29896060 - 29896031
Alignment:
Q  320 aataataaaaatgtttaattttgatttaat 349  Q
    ||||||||||||||||||||||||||||||    
T  29896060 aataataaaaatgtttaattttgatttaat 29896031  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 54606909 - 54606873
Alignment:
Q  313 ataatataataataaaaatgtttaattttgatttaat 349  Q
    |||| |||||||||||||||||||||||| |||||||    
T  54606909 ataaaataataataaaaatgtttaattttaatttaat 54606873  T

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Target: scaffold0262 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 12011 - 12047
Alignment:
Q  313 ataatataataataaaaatgtttaattttgatttaat 349  Q
    |||| |||||||||||||| |||||||||||||||||    
T  12011 ataaaataataataaaaatatttaattttgatttaat 12047  T

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