View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16960_low_8 (Length: 317)
Name: NF16960_low_8
Description: NF16960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16960_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 308
Target Start/End: Complemental strand, 2357760 - 2357472
Alignment:
| Q |
20 |
cttgaaggtacaccaacttatttatatccgactttgttacacatttatctcttccaacgtggaagtcaagttctgcttttgctttttccaatgtatgagg |
119 |
Q |
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| T |
2357760 |
cttgaaggtacaccaacttgtttatatccgactttgttacacatttatctcttccaacgtggaagtcaagttctgcttttgctttttccaatgtatgagg |
2357661 |
T |
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| Q |
120 |
atttttcaataacaaacatattgcccaagtaagggtaatagcacttgtgtcaattcctcctgcaattagtgactgtaaatgaagtgaaaattttataaaa |
219 |
Q |
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| T |
2357660 |
atttttcagtaacaaacatattgcccaagtaagggtaatagcacttgtgtcaattcctcctgcaattagtgactgtaaatgaagtgaaaattttataaaa |
2357561 |
T |
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| Q |
220 |
atgtgtataagagtaagtttaaataaaattcaaacatgtatcaattgaagcaaagtgtttggtaagttcgtatagagtttttctctctg |
308 |
Q |
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| T |
2357560 |
atgtgtataagagtaagtttaaataaaattcaaacatgtatcaattgaagcaaagtgtttggtaagttcgtatagagtttttctttctg |
2357472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 2363075 - 2362891
Alignment:
| Q |
20 |
cttgaaggtacaccaacttatttatatccgactttgttacacatttatctcttccaacgtggaagtcaagttctgcttttgctttttccaatgtatgagg |
119 |
Q |
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| T |
2363075 |
cttgaaggtacaccaacttgtctatatctgactttcttacacacctctcttttccaacttgagcatcaagttcttcttttgcttttttcaatattagagg |
2362976 |
T |
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| Q |
120 |
atttttcaataacaaacatattgcccaagtaagggtaatagcacttgtgtcaattcctcctgcaattagtgactgtaaatgaagt |
204 |
Q |
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| T |
2362975 |
atttctaagcaacaaacatattgcccatgtaagggtaacgctagttgtttcaattcctcccccgattagtgtctgtaaaagaagt |
2362891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 84 - 179
Target Start/End: Complemental strand, 2351380 - 2351285
Alignment:
| Q |
84 |
gtcaagttctgcttttgctttttccaatgtatgaggatttttcaataacaaacatattgcccaagtaagggtaatagcacttgtgtcaattcctcc |
179 |
Q |
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| T |
2351380 |
gtcaagttcttcttttgcttttttcaatacaagaggatttttcaatagtaaacatattgcccatgtaagagtaacactacttgtgtcacttcctcc |
2351285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 2368756 - 2368684
Alignment:
| Q |
85 |
tcaagttctgcttttgctttttccaatgtatgaggatttttcaataacaaacatattgcccaagtaagggtaa |
157 |
Q |
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| T |
2368756 |
tcaagttcttcttttgctttttccaatattagaggatttctaagtaacaaacatattgcccatgtaagggtaa |
2368684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 155
Target Start/End: Complemental strand, 2307242 - 2307175
Alignment:
| Q |
88 |
agttctgcttttgctttttccaatgtatgaggatttttcaataacaaacatattgcccaagtaagggt |
155 |
Q |
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| T |
2307242 |
agttcttcttttgctttttccattacaagaggattgttcaatagcaaacatagtgcccatgtaagggt |
2307175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 4305773 - 4305589
Alignment:
| Q |
20 |
cttgaaggtacaccaacttatttatatccgactttgttacacatttatctcttccaacgtggaagtcaagttctgcttttgctttttccaatgtatgagg |
119 |
Q |
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|||||||||| |||||||| | ||||||||||| | ||||||| | ||| | ||||| |||| |||||||||| ||| ||||||||| | | | |||| |
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| T |
4305773 |
cttgaaggtataccaacttgtctatatccgactcttttacacacctctctttgccaacttggatgtcaagttcttcttgtgctttttctattacaagagg |
4305674 |
T |
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| Q |
120 |
atttttcaataacaaacatattgcccaagtaagggtaatagcacttgtgtcaattcctcctgcaattagtgactgtaaatgaagt |
204 |
Q |
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| T |
4305673 |
attttccagtaacaaacacattgcccatataagggtgacactagttgtgtcaactcctcctgcaatcagtgtctttaaacgaagt |
4305589 |
T |
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