View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16960_low_9 (Length: 300)
Name: NF16960_low_9
Description: NF16960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16960_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 9 - 285
Target Start/End: Complemental strand, 38980615 - 38980339
Alignment:
| Q |
9 |
cataaaatggacaaattggtgtgtgaacttttgtcttgccaaattgatccaaatacctaaacaccatgataaattaaccaaaatagtattaaaaattata |
108 |
Q |
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| T |
38980615 |
cataaaatggacaaattggtgtgtgaacttttgtcttgccaaattgatccaaatacctaaacaccatgataaattaaccaaaatagtattaaaaattata |
38980516 |
T |
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| Q |
109 |
tacagctaaaattcgaatcatagctaccgcaatttatagctatatatgacactaatgatgattttacaactgtttaaacgagatttaaaccatgtcggat |
208 |
Q |
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| T |
38980515 |
tacagctaaaattcgaatcatagctaccgcaatttatagctatgtatgacactaatgattattttacaactgtttaaacgagatttaaaccatgtcggat |
38980416 |
T |
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| Q |
209 |
aaaaagtcaaattcaagcaagcatcgacgatattagactatgattttctctaatataaaaaattgtgatgtaattgc |
285 |
Q |
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| T |
38980415 |
aaaaagtcaaattcaagcaagcatcgacgatattagactatgattttctctaatataaaaaattgtgatgtaattgc |
38980339 |
T |
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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 30504049 - 30504107
Alignment:
| Q |
9 |
cataaaatggacaaattggtgtgtgaacttttgtcttgccaaattgatccaaataccta |
67 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||| ||||| |||||| |
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| T |
30504049 |
catagaatggacaaattggtgtgtgcacttttgtcttgccaaattggtccaagtaccta |
30504107 |
T |
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