View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16961_high_11 (Length: 242)

Name: NF16961_high_11
Description: NF16961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16961_high_11
NF16961_high_11
[»] chr4 (3 HSPs)
chr4 (17-229)||(11853994-11854207)
chr4 (18-130)||(11851380-11851492)
chr4 (30-130)||(11850214-11850314)
[»] chr7 (13 HSPs)
chr7 (17-229)||(29069217-29069431)
chr7 (18-229)||(29111164-29111377)
chr7 (18-193)||(29078413-29078596)
chr7 (17-203)||(28956501-28956695)
chr7 (18-173)||(29058452-29058615)
chr7 (30-130)||(3618780-3618880)
chr7 (18-130)||(29071680-29071792)
chr7 (18-200)||(3617759-3617946)
chr7 (18-130)||(29098093-29098205)
chr7 (26-130)||(29101817-29101921)
chr7 (30-127)||(29115965-29116062)
chr7 (30-130)||(29072855-29072954)
chr7 (18-130)||(29113345-29113457)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 11854207 - 11853994
Alignment:
Q  17 agaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattcta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11854207 agaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattcta 11854108  T
Q  117 ccgcttggacgacagttc-tgagtacacaaaacttgttaaaataagagtaataaccaacaaaataaaagaagctttggggaaaaatctagatctcttcat 215  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11854107 ccgcttggacgacagttcttgagtacacaaaacttgttaaaataagagtaataaccaacaaaataaaagaagctttggggaaaaatctagatctcttcat 11854008  T
Q  216 tttgtctatgaaac 229  Q
    ||||||||||||||    
T  11854007 tttgtctatgaaac 11853994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 11851492 - 11851380
Alignment:
Q  18 gaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattctac 117  Q
    |||||| |||| ||||||||||| ||||||||||||||||||||||| || |||||||  ||||||||||| |  |||||||||||||| || |||||||    
T  11851492 gaacattcataagttgtgtacatctttccttgtacacaacaatcagagtcattctctttgttgcattgtcccgatggagctttctttcccctgattctac 11851393  T
Q  118 cgcttggacgaca 130  Q
    || ||||||||||    
T  11851392 cgtttggacgaca 11851380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 11850214 - 11850314
Alignment:
Q  30 gttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattctaccgcttggacgac 129  Q
    ||||||||||||||||| ||||||||||||||| | || ||||| || || ||||||| || ||||||||| | |||| |||||||||| ||||||||||    
T  11850214 gttgtgtacatttttccctgtacacaacaatcaaagtcattctcctggttacattgtcttgaaggagctttttctcctttaattctaccacttggacgac 11850313  T
Q  130 a 130  Q
    |    
T  11850314 a 11850314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 29069217 - 29069431
Alignment:
Q  17 agaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattcta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29069217 agaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattacattgtcctggaggagctttctttcctctaattcta 29069316  T
Q  117 ccgcttggacgacagttctgag--------tacacaaaacttgttaaaataagagtaataaccaacaaaataaaagaagctttggggaaaaatctagatc 208  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||      |||    
T  29069317 ccgcttggacgacagttctgagcttctgaatacacaaaacttgttaaaataagagtaataaccaacaaaataaaagaagctttggggcaaa------atc 29069410  T
Q  209 tcttcattttgtctatgaaac 229  Q
    |||||||||||||||||||||    
T  29069411 tcttcattttgtctatgaaac 29069431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 29111164 - 29111377
Alignment:
Q  18 gaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattctac 117  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29111164 gaacatacataagttgtgtacatttttccttgtacgcaacaatcagaatcattctcttgattgcattttcctggaggagctttctttcctctaattctac 29111263  T
Q  118 cgcttggacgacagttctgag--------tacacaaaacttgttaaaataagagtaataaccaacaaaataaaagaagctttggggaaaaatctagatct 209  Q
    ||||||| || ||||||||||        |||||||||||||| ||||||||||||||| |||| |||||||||||| |||||||| |||      ||||    
T  29111264 cgcttggtcggcagttctgagcttcggaatacacaaaacttgtaaaaataagagtaatagccaagaaaataaaagaaactttggggcaaa------atct 29111357  T
Q  210 cttcattttgtctatgaaac 229  Q
    ||||||||||||||||||||    
T  29111358 cttcattttgtctatgaaac 29111377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 29078413 - 29078596
Alignment:
Q  18 gaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattctac 117  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29078413 gaacatacataagttgtgtacatttttccttctacacaacaatcagaatcattctcttgattgcattgtcctggaggagctttctttcctctaattctac 29078512  T
Q  118 cgcttggacgacagttct--------gagtacacaaaacttgttaaaataagagtaataaccaacaaaataaaagaagctttgg 193  Q
    ||||||||||||| ||||        ||||||||  || |||||||||||||||| |||| |||||||| ||||||||||||||    
T  29078513 cgcttggacgacaattctgagcttcagagtacacgcaatttgttaaaataagagttataatcaacaaaagaaaagaagctttgg 29078596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 28956695 - 28956501
Alignment:
Q  17 agaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattcta 116  Q
    ||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||  |||||||    
T  28956695 agaacattcataagttgtgtacattttttcttgtacacaacaatcagaatcgttctcttgattacattgtcctggaggagcattttttccttcaattcta 28956596  T
Q  117 ccgcttggacgaca--------gttctgagtacacaaaacttgttaaaataagagtaataaccaacaaaataaaagaagctttggggaaaaatct 203  Q
    |||||||| || ||         ||| ||||| ||| |||||||||||| |||||||||||  ||||||| |||||||||||||||| |||||||    
T  28956595 ccgcttgggcggcaactctgagcttccgagtatacagaacttgttaaaacaagagtaataatgaacaaaagaaaagaagctttggggcaaaatct 28956501  T

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Target: chr7; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 29058452 - 29058615
Alignment:
Q  18 gaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattctac 117  Q
    |||||| |||| ||||||||||| ||||||||||||||||||||||| || |||||||  ||||||||||| |  |||||||||||||| || |||||||    
T  29058452 gaacattcataagttgtgtacatctttccttgtacacaacaatcagagtcattctctttgttgcattgtccagatggagctttctttcccctgattctac 29058551  T
Q  118 cgcttggacgacagttctgag--------tacacaaaacttgttaaaataagagtaataaccaa 173  Q
    || |||||||||| || ||||        |||||| |||||||||||||||||||||| |||||    
T  29058552 cgtttggacgacacttttgagcttcagaatacacacaacttgttaaaataagagtaatcaccaa 29058615  T

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Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 3618880 - 3618780
Alignment:
Q  30 gttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattctaccgcttggacgac 129  Q
    ||||||||||||||||||||||||||||||||||| || ||||| || ||||||||||| | ||||||||| | |||| |||||||||| ||||||||||    
T  3618880 gttgtgtacatttttccttgtacacaacaatcagagtcattctcctggttgcattgtccggaaggagctttttctcctttaattctaccacttggacgac 3618781  T
Q  130 a 130  Q
    |    
T  3618780 a 3618780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 29071680 - 29071792
Alignment:
Q  18 gaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattctac 117  Q
    |||||| |||| ||||||||||| ||||||||||||||||||||||| || |||||||  ||||||||||| |  |||||||||||||| || |||||||    
T  29071680 gaacattcataagttgtgtacatctttccttgtacacaacaatcagagtcattctctttgttgcattgtcccgatggagctttctttcccctgattctac 29071779  T
Q  118 cgcttggacgaca 130  Q
    || ||||||||||    
T  29071780 cgtttggacgaca 29071792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 3617759 - 3617946
Alignment:
Q  18 gaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattctac 117  Q
    |||||| |||| ||||||||||| ||||||||||||||||||||||| || |||||||  || |||||||| |  |||||||||||||| || |||||||    
T  3617759 gaacattcataagttgtgtacatctttccttgtacacaacaatcagagtcattctctttgttacattgtccagatggagctttctttcccctgattctac 3617858  T
Q  118 cgcttggacgacagttctgag--------tacacaaaacttgttaaaataagagtaataaccaacaaaataaaagaagctttggggaaaaa 200  Q
    || | |||||||| || ||||         |||||||||||||||||| |||||||||   ||| |||| ||||||| |||||||| ||||    
T  3617859 cgttcggacgacacttttgagcttcagaaaacacaaaacttgttaaaacaagagtaat---caataaaagaaaagaaactttggggcaaaa 3617946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 29098205 - 29098093
Alignment:
Q  18 gaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattctac 117  Q
    |||||| |||| ||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||   |||| | |  ||||| || |||||||    
T  29098205 gaacattcataagttgtatacatttgtccttgtacacaacaatcagaatcattctcttgattgcattgtccacaaggaacctcttttccacttattctac 29098106  T
Q  118 cgcttggacgaca 130  Q
    | |||||||||||    
T  29098105 cacttggacgaca 29098093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 130
Target Start/End: Complemental strand, 29101921 - 29101817
Alignment:
Q  26 atatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattctaccgcttgga 125  Q
    ||||||||||||||||||||| ||||||||||||||||| || ||||| || || |||||||| | ||||| ||| | |||| |||||||||| ||||||    
T  29101921 atatgttgtgtacatttttccctgtacacaacaatcagagtcattctcctggttacattgtccggaaggagttttttctcctttaattctaccacttgga 29101822  T
Q  126 cgaca 130  Q
    |||||    
T  29101821 cgaca 29101817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 30 - 127
Target Start/End: Complemental strand, 29116062 - 29115965
Alignment:
Q  30 gttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattctaccgcttggacg 127  Q
    |||||||||||||||||||| ||||||||||| ||||| || || || ||||||||||| | ||||||||| | |||| |||||||||| ||||||||    
T  29116062 gttgtgtacatttttccttgcacacaacaatctgaatcattttcctggttgcattgtccggaaggagctttttctcctttaattctaccacttggacg 29115965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 29072954 - 29072855
Alignment:
Q  30 gttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagc-tttctttcctctaattctaccgcttggacga 128  Q
    ||||||||||||||||| ||||||||||||||||| || ||||| ||||| |||||||| | |||||| |||||||  | |||||||||| |||||||||    
T  29072954 gttgtgtacatttttccctgtacacaacaatcagagtcattctcctgattacattgtccggaaggagcttttcttt--tttaattctaccacttggacga 29072857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 29113457 - 29113345
Alignment:
Q  18 gaacatacatatgttgtgtacatttttccttgtacacaacaatcagaatcgttctcttgattgcattgtcctggaggagctttctttcctctaattctac 117  Q
    |||||| |||| |||||  |||||| ||||||||| |||||||||||||| |||||||||||||||||| | | |||||| |  ||||| || ||||||     
T  29113457 gaacattcataagttgtacacatttgtccttgtacccaacaatcagaatcattctcttgattgcattgtgcagaaggagcctcttttccacttattctat 29113358  T
Q  118 cgcttggacgaca 130  Q
    | |||||||||||    
T  29113357 cacttggacgaca 29113345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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