View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16961_high_12 (Length: 241)
Name: NF16961_high_12
Description: NF16961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16961_high_12 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 47803071 - 47803296
Alignment:
| Q |
16 |
caaatgctgtatgcaaaaagtgtgtttctacttcagaatttactctagttagaggtgttcaaggactgtgctgtgactgcttagagatagtaaagattat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47803071 |
caaatgctgtatgcaaaaagtgtgtttctacttcagaatttactctagttagaggtgttcaaggactgtgctgtgactgcttagagatagtaaagattat |
47803170 |
T |
|
| Q |
116 |
agaactaaagttggaccatgattctgagggggtaggtgtgataataacttggattttagaatatttaccaaatttgttcttattgattgtttaatccata |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47803171 |
agaactaaagttggaccatgattctgagggggtaggtgtgataataactttgattttagaatatttaccaaatttgttcttattgattgtttaatccata |
47803270 |
T |
|
| Q |
216 |
attgttttaggacttttaaaacatcc |
241 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
47803271 |
attgttttaggacttttaaaacatcc |
47803296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 47806141 - 47806211
Alignment:
| Q |
162 |
acttggattttagaatatttaccaaatttgttcttattgat--tgtttaatccataattgttttaggactt |
230 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||| ||| |||| ||||||||||||||||| ||||| |
|
|
| T |
47806141 |
acttggattgtagaatatttaccaaattttttcttagagataatgttaaatccataattgttttatgactt |
47806211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University