View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16961_high_13 (Length: 210)
Name: NF16961_high_13
Description: NF16961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16961_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 24616447 - 24616242
Alignment:
| Q |
1 |
atgaagtgaatgtcagaataaataaacaaagagattgctaatttaattatgnnnnnnnn-tgataacctgcta--------gtaggcgatggaacggaaa |
91 |
Q |
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| T |
24616447 |
atgaagtgaatgtcagaataaataaacaaagagattgctaatttaattatgaaaaaaaaatgataacctgctatcgtagttgtaggcgatggaacggaaa |
24616348 |
T |
|
| Q |
92 |
agccactaaagtggatcctccaacaacaagctactaccatcaaagttgcaatgttgtgaatcctctttgtaatgacagtttgaagaacagcttgcactta |
191 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24616347 |
agccactaaagtggatcctccaacaacaagctactgccatcaaagttgcaatgttgtgaatcctctttgtaatgacagtttggagaacagcttgcactta |
24616248 |
T |
|
| Q |
192 |
tttttg |
197 |
Q |
| |
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|||||| |
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| T |
24616247 |
tttttg |
24616242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 24107656 - 24107858
Alignment:
| Q |
1 |
atgaagtgaatgtcagaataaataaacaaagagattgctaatttaattatgnnnnnnnn-tgataacctgcta--------gtaggcgatggaacggaaa |
91 |
Q |
| |
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||||||| |||||||||| |||||||||||||||||| |||||||| |||| ||||||||||||| ||||| ||||||| ||||| |
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| T |
24107656 |
atgaagtaaatgtcagaacaaataaacaaagagattgttaatttaagtatgaaaaaataatgataacctgctatcaaagttgtaggtgatggaa-ggaaa |
24107754 |
T |
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| Q |
92 |
agccactaaagtggatcctc-caacaacaagctactaccatcaaagttgcaatgttgtgaatcctctttgtaatgacagtttgaagaacagcttgcactt |
190 |
Q |
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|| ||||||||| |||| ||| ||||||||||| | ||| ||||||||||| |||| |||||||||||||||||||||| || ||||||||||||| |
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| T |
24107755 |
cgcgggtaaagtggaccctctcaagaacaagctactgctatcgaagttgcaatgctgtgcatcctctttgtaatgacagttt--aggacagcttgcactt |
24107852 |
T |
|
| Q |
191 |
attttt |
196 |
Q |
| |
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|||||| |
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| T |
24107853 |
attttt |
24107858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 24114366 - 24114407
Alignment:
| Q |
9 |
aatgtcagaataaataaacaaagagattgctaatttaattat |
50 |
Q |
| |
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||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
24114366 |
aatgtaagaataaataaacaaagagattgttaatttaattat |
24114407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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