View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16961_high_5 (Length: 351)
Name: NF16961_high_5
Description: NF16961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16961_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 344
Target Start/End: Original strand, 3526512 - 3526839
Alignment:
| Q |
19 |
acgtgatattcttgtgtgtactttaaagggttttttatgtgttcactt--attgattagtagtggtttaaaaataatttaatggttttatttaattgatt |
116 |
Q |
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| T |
3526512 |
acgtgatattcttgtgtgtactttaaagggttttttatgtgttcactttaattgtttagtagtggtttaaaaataatttaatggttttatttaattgatt |
3526611 |
T |
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| Q |
117 |
agttactataaagggttttgtgtgtgcactttgccatttgcttgtctagtgtaagatttgttcaacaaaatccgggggaaaaaatcaaacactcattaga |
216 |
Q |
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| T |
3526612 |
agttactataaagggttttatgtgtgcactttgccatttgtttgtctagtgtaagatttgttcaacaaaatctgggggaaaaaatcaaacactcattaga |
3526711 |
T |
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| Q |
217 |
tttattcaggttcctcaaagttagctgatcgaatgaataatatttataagttcttatagaaataacatatacatagaaacttatgatgataaacgctttg |
316 |
Q |
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|||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3526712 |
tttattaaggttcctcacagttagctgatcgaatgaataatatttataagttcttctagaaataacatatacatagaaacttaagatgataaacgctttg |
3526811 |
T |
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| Q |
317 |
tcttttgtttttaacttattttcatctc |
344 |
Q |
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|||| |||||||||||||||||| |||| |
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| T |
3526812 |
tcttgtgtttttaacttattttcttctc |
3526839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 106 - 254
Target Start/End: Original strand, 3526115 - 3526265
Alignment:
| Q |
106 |
tttaattgattagttactataaagggttttgtgtgtgcactttgccatttgcttgtctagtgtaagatttgttcaacaaaatccgg--gggaaaaaatca |
203 |
Q |
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| T |
3526115 |
tttaattgattagttactataaagggttttatgcgtgcactttgtcatttgtttgcctagtgtaagatttgttcaacaaaatctggaagaaaaaaaatca |
3526214 |
T |
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| Q |
204 |
aacactcattagatttattcaggttcctcaaagttagctgatcgaatgaat |
254 |
Q |
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| T |
3526215 |
tacactcactagatctattaaggttcctcacagttaactgatccaatgaat |
3526265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 3525791 - 3525827
Alignment:
| Q |
18 |
cacgtgatattcttgtgtgtactttaaagggtttttt |
54 |
Q |
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| T |
3525791 |
cacgtgatattcttgtgtgcactttaaagggtttttt |
3525827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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