View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16961_high_7 (Length: 308)

Name: NF16961_high_7
Description: NF16961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16961_high_7
NF16961_high_7
[»] chr1 (3 HSPs)
chr1 (182-293)||(2067622-2067733)
chr1 (14-113)||(2067801-2067900)
chr1 (56-99)||(2067909-2067952)
[»] chr5 (8 HSPs)
chr5 (195-293)||(34429669-34429767)
chr5 (182-281)||(34650286-34650385)
chr5 (205-291)||(34679225-34679311)
chr5 (220-289)||(27841260-27841329)
chr5 (183-292)||(18271519-18271628)
chr5 (209-293)||(34686385-34686469)
chr5 (206-293)||(34427617-34427704)
chr5 (205-283)||(34421442-34421520)
[»] chr7 (1 HSPs)
chr7 (219-293)||(45161250-45161324)


Alignment Details
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 182 - 293
Target Start/End: Complemental strand, 2067733 - 2067622
Alignment:
Q  182 attaacatggacattatcaatcataagatatttctactttttgaattataggtgcgcgattcagctgttcaactccgagcaacagggggagtagttttgg 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2067733 attaacatggacattatcaatcataagatatttctactttttgaattataggtgcgcgattcagctgttcaactccgagcaacagggggagtagttttgg 2067634  T
Q  282 gagatgctacat 293  Q
    ||||||||||||    
T  2067633 gagatgctacat 2067622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 2067900 - 2067801
Alignment:
Q  14 gtattaccttctcatttttaagttcacgatcctacatatgaccaatagtgtaaatttgatcttccacaaatctcgattgttataatcagaaaatggattg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2067900 gtattaccttctcatttttaagttcacgatcctacatatgaccaatagtgtaaatttgatcttccacaaatctcgattgttataatcagaaaatggattg 2067801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 99
Target Start/End: Complemental strand, 2067952 - 2067909
Alignment:
Q  56 caatagtgtaaatttgatcttccacaaatctcgattgttataat 99  Q
    |||||||| ||||| |||||||||||||||||||||||||||||    
T  2067952 caatagtgcaaattagatcttccacaaatctcgattgttataat 2067909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 195 - 293
Target Start/End: Complemental strand, 34429767 - 34429669
Alignment:
Q  195 ttatcaatcataagatatttctactttttgaattataggtgcgcgattcagctgttcaactccgagcaacagggggagtagttttgggagatgctacat 293  Q
    |||||||||  ||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||| || | |||  ||||||||||||||||||    
T  34429767 ttatcaatctcaagatatttatactttttgaattaaaggtgcgcgactcagctgttcaactccgagcaactggagaagtgattttgggagatgctacat 34429669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 182 - 281
Target Start/End: Original strand, 34650286 - 34650385
Alignment:
Q  182 attaacatggacattatcaatcataagatatttctactttttgaattataggtgcgcgattcagctgttcaactccgagcaacagggggagtagttttgg 281  Q
    |||||||||||||||||||||| ||| |||||| ||  ||| |||  ||||||||||||||||| ||||||||| |||||||||| ||||||||||||||    
T  34650286 attaacatggacattatcaatcttaacatatttatatgtttggaaccataggtgcgcgattcaggtgttcaacttcgagcaacagagggagtagttttgg 34650385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 205 - 291
Target Start/End: Original strand, 34679225 - 34679311
Alignment:
Q  205 taagatatttctactttttgaattataggtgcgcgattcagctgttcaactccgagcaacagggggagtagttttgggagatgctac 291  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||  ||||||||||| ||||| |||||||| ||||||||||||||    
T  34679225 taagatatttatacattttgaattataggtacgcgattcagctgcacaactccgagccacaggaggagtagtattgggagatgctac 34679311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 27841329 - 27841260
Alignment:
Q  220 ttttgaattataggtgcgcgattcagctgttcaactccgagcaacagggggagtagttttgggagatgct 289  Q
    |||| ||||||||||||| |||||||||  |||||| |||||||||||||||||||||||||||||||||    
T  27841329 ttttaaattataggtgcgtgattcagcttctcaacttcgagcaacagggggagtagttttgggagatgct 27841260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 292
Target Start/End: Original strand, 18271519 - 18271628
Alignment:
Q  183 ttaacatggacattatcaatcataagatatttctactttttgaattataggtgcgcgattcagctgttcaactccgagcaacagggggagtagttttggg 282  Q
    |||||||| |||||||| |||  ||||| ||| || |||||||||||||||| ||||| || |||||||||||||||| || ||| | ||| ||||||||    
T  18271519 ttaacatgcacattatctatctgaagatgtttatattttttgaattataggtacgcgactcggctgttcaactccgagtaaaaggagaagtggttttggg 18271618  T
Q  283 agatgctaca 292  Q
     |||||||||    
T  18271619 tgatgctaca 18271628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 293
Target Start/End: Original strand, 34686385 - 34686469
Alignment:
Q  209 atatttctactttttgaattataggtgcgcgattcagctgttcaactccgagcaacagggggagtagttttgggagatgctacat 293  Q
    |||||| |||||||||||||||||||||| ||  | || |||||||| ||||||||||| | ||||||||| |||||||||||||    
T  34686385 atatttatactttttgaattataggtgcgtgacgcggcagttcaacttcgagcaacaggagaagtagttttaggagatgctacat 34686469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 293
Target Start/End: Complemental strand, 34427704 - 34427617
Alignment:
Q  206 aagatatttctactttttgaattataggtgcgcgattcagctgttcaactccgagcaacagggggagtagttttgggagatgctacat 293  Q
    ||||||| | || ||||||||||| ||||| | || ||   |||||||||||||||||| |||| ||||||||||| |||||||||||    
T  34427704 aagatatatatattttttgaattaaaggtgtgtgactctattgttcaactccgagcaaccggggaagtagttttggaagatgctacat 34427617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 34421520 - 34421442
Alignment:
Q  205 taagatatttctactttttgaattataggtgcgcgattcagctgttcaactccgagcaacagggggagtagttttggga 283  Q
    |||||| ||| || ||| || |||||||||||| ||| | ||||||||||| |||||||| || | |||||||||||||    
T  34421520 taagatgtttatattttctgtattataggtgcgtgatgcggctgttcaacttcgagcaactggagaagtagttttggga 34421442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 45161324 - 45161250
Alignment:
Q  219 tttttgaattataggtgcgcgattcagctgttcaactccgagcaacagggggagtagttttgggagatgctacat 293  Q
    |||||||| |||||||| | ||||||||||  |||||| || ||| ||| | ||||||||||| |||||||||||    
T  45161324 tttttgaactataggtgtgtgattcagctgcacaactctgaacaaaaggagaagtagttttggaagatgctacat 45161250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University